assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002140115.1_ASM214011v1	NZ_CP015817	Staphylococcus aureus strain FORC_039 chromosome, complete genome	1	166186-166267	1	CRISPRCasFinder	no		DinG,cas3,DEDDh,csa3,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGG	23	1	2	166209-166244|166209-166244	NZ_CP015817.1_976462-976497|NZ_CP015817.1_1850323-1850358	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,WYL	NA,NA|68aa|down_0|NZ_CP015817.1_166331_166535_-	NA|413aa|up_9|NZ_CP015817.1_155266_156505_+	cd13127, MATE_tuaB_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins	NA|402aa|up_8|NZ_CP015817.1_156538_157744_+	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|186aa|up_7|NZ_CP015817.1_157754_158312_+	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane]	NA|296aa|up_6|NZ_CP015817.1_158311_159199_+	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs	NA|421aa|up_5|NZ_CP015817.1_159252_160515_+	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|382aa|up_4|NZ_CP015817.1_160591_161737_+	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|109aa|up_3|NZ_CP015817.1_161801_162128_-	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI	NA|128aa|up_2|NZ_CP015817.1_162134_162518_-	pfam04304, DUF454, Protein of unknown function (DUF454)	NA|496aa|up_1|NZ_CP015817.1_162944_164432_+	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like	NA|320aa|up_0|NZ_CP015817.1_165077_166037_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|68aa|down_0|NZ_CP015817.1_166331_166535_-	NA	NA|171aa|down_1|NZ_CP015817.1_166713_167226_+	pfam14026, DUF4242, Protein of unknown function (DUF4242)	NA|247aa|down_2|NZ_CP015817.1_167567_168308_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|325aa|down_3|NZ_CP015817.1_168321_169296_+	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily	NA|254aa|down_4|NZ_CP015817.1_169292_170054_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|344aa|down_5|NZ_CP015817.1_170066_171098_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|120aa|down_6|NZ_CP015817.1_171314_171674_+	COG5609, COG5609, Uncharacterized conserved protein [Function unknown]	NA|342aa|down_7|NZ_CP015817.1_171846_172872_+	PRK07574, PRK07574, NAD-dependent formate dehydrogenase	NA|417aa|down_8|NZ_CP015817.1_173255_174506_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|2392aa|down_9|NZ_CP015817.1_174952_182128_+	PRK12467, PRK12467, peptide synthase; Provisional
GCF_002140115.1_ASM214011v1	NZ_CP015817	Staphylococcus aureus strain FORC_039 chromosome, complete genome	2	977911-977995	2	CRISPRCasFinder	no	DEDDh	DinG,cas3,DEDDh,csa3,WYL	Unclear	TGCAAGTTGGGGTGTGGGCCCCAACA	26	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,WYL	NA|31aa|up_5|NZ_CP015817.1_972516_972609_+,NA|138aa|up_1|NZ_CP015817.1_975754_976168_+,NA|129aa|down_1|NZ_CP015817.1_979208_979595_+,NA|92aa|down_6|NZ_CP015817.1_983576_983852_-	NA|454aa|up_9|NZ_CP015817.1_968301_969663_+	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|177aa|up_8|NZ_CP015817.1_969832_970363_+	pfam11667, DUF3267, Putative zincin peptidase	NA|357aa|up_7|NZ_CP015817.1_970609_971680_+	PRK02406, PRK02406, DNA polymerase IV; Validated	DEDDh|185aa|up_6|NZ_CP015817.1_971746_972301_-	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|31aa|up_5|NZ_CP015817.1_972516_972609_+	NA	NA|167aa|up_4|NZ_CP015817.1_972690_973191_-	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|438aa|up_3|NZ_CP015817.1_973482_974796_+	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|244aa|up_2|NZ_CP015817.1_974797_975529_+	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|138aa|up_1|NZ_CP015817.1_975754_976168_+	NA	NA|329aa|up_0|NZ_CP015817.1_976657_977644_-	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|253aa|down_0|NZ_CP015817.1_978233_978992_+	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|129aa|down_1|NZ_CP015817.1_979208_979595_+	NA	NA|234aa|down_2|NZ_CP015817.1_979609_980311_+	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|348aa|down_3|NZ_CP015817.1_980307_981351_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|210aa|down_4|NZ_CP015817.1_981340_981970_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|406aa|down_5|NZ_CP015817.1_982081_983299_-	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|92aa|down_6|NZ_CP015817.1_983576_983852_-	NA	NA|155aa|down_7|NZ_CP015817.1_983858_984323_-	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|67aa|down_8|NZ_CP015817.1_984469_984670_+	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|419aa|down_9|NZ_CP015817.1_984672_985929_+	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)
GCF_002140115.1_ASM214011v1	NZ_CP015817	Staphylococcus aureus strain FORC_039 chromosome, complete genome	3	1117885-1117963	3	CRISPRCasFinder	no		DinG,cas3,DEDDh,csa3,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,WYL	NA,NA	NA|188aa|up_9|NZ_CP015817.1_1100205_1100769_-	pfam06962, rRNA_methylase, Putative rRNA methylase	NA|318aa|up_8|NZ_CP015817.1_1100765_1101719_-	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|394aa|up_7|NZ_CP015817.1_1101828_1103010_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|806aa|up_6|NZ_CP015817.1_1103297_1105715_+	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|104aa|up_5|NZ_CP015817.1_1105736_1106048_+	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|2187aa|up_4|NZ_CP015817.1_1106373_1112934_+	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|423aa|up_3|NZ_CP015817.1_1113050_1114319_-	pfam03486, HI0933_like, HI0933-like protein	NA|554aa|up_2|NZ_CP015817.1_1114725_1116387_+	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|232aa|up_1|NZ_CP015817.1_1116383_1117079_+	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|141aa|up_0|NZ_CP015817.1_1117095_1117518_+	pfam12732, YtxH, YtxH-like protein	NA|470aa|down_0|NZ_CP015817.1_1118264_1119674_+	PRK07318, PRK07318, dipeptidase PepV; Reviewed	NA|283aa|down_1|NZ_CP015817.1_1119677_1120526_+	TIGR01121, D-alanine_aminotransferase, D-amino acid aminotransferase	NA|264aa|down_2|NZ_CP015817.1_1121075_1121867_+	COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme transport and metabolism]	NA|215aa|down_3|NZ_CP015817.1_1121881_1122526_+	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|281aa|down_4|NZ_CP015817.1_1122996_1123839_+	cd07728, YtnP-like_MBL-fold, Bacillus subtilis YtnP and related proteins; MBL-fold metallo hydrolase domain	NA|104aa|down_5|NZ_CP015817.1_1123963_1124275_-	COG5584, COG5584, Predicted small secreted protein [Function unknown]	NA|359aa|down_6|NZ_CP015817.1_1124361_1125438_+	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|104aa|down_7|NZ_CP015817.1_1125502_1125814_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|286aa|down_8|NZ_CP015817.1_1125913_1126771_+	PRK13668, PRK13668, hypothetical protein; Provisional	NA|199aa|down_9|NZ_CP015817.1_1126799_1127396_+	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed
GCF_002140115.1_ASM214011v1	NZ_CP015817	Staphylococcus aureus strain FORC_039 chromosome, complete genome	4	1689813-1689898	4	CRISPRCasFinder	no	cas3	DinG,cas3,DEDDh,csa3,WYL	Unclear	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	5	1689843-1689868|1689843-1689868|1689843-1689868|1689843-1689868|1689843-1689868	NZ_CP015817.1_790275-790250|NZ_CP015817.1_790331-790306|NZ_CP015817.1_790387-790362|NZ_CP015817.1_834546-834571|NZ_CP015817.1_1993450-1993475	NA	1	1	Unclear	DinG,cas3,DEDDh,csa3,WYL	NA,NA	NA|436aa|up_9|NZ_CP015817.1_1675517_1676825_-	PRK05335, PRK05335, tRNA (uracil-5-)-methyltransferase Gid; Reviewed	NA|692aa|up_8|NZ_CP015817.1_1676980_1679056_-	PRK05582, PRK05582, type I DNA topoisomerase	NA|291aa|up_7|NZ_CP015817.1_1679229_1680102_-	COG0758, Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]	NA|415aa|up_6|NZ_CP015817.1_1680274_1681519_-	pfam02388, FemAB, FemAB family	NA|373aa|up_5|NZ_CP015817.1_1681546_1682665_-	pfam01476, LysM, LysM domain	NA|303aa|up_4|NZ_CP015817.1_1682891_1683800_-	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|389aa|up_3|NZ_CP015817.1_1683821_1684988_-	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|256aa|up_2|NZ_CP015817.1_1685096_1685864_-	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like	NA|295aa|up_1|NZ_CP015817.1_1685847_1686732_-	PRK09563, rbgA, GTPase YlqF; Reviewed	NA|869aa|up_0|NZ_CP015817.1_1687132_1689739_+	COG4485, COG4485, Predicted membrane protein [Function unknown]	NA|117aa|down_0|NZ_CP015817.1_1690208_1690559_-	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|246aa|down_1|NZ_CP015817.1_1690661_1691399_-	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|168aa|down_2|NZ_CP015817.1_1691398_1691902_-	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|92aa|down_3|NZ_CP015817.1_1692089_1692365_-	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|456aa|down_4|NZ_CP015817.1_1692799_1694167_-	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|111aa|down_5|NZ_CP015817.1_1694192_1694525_-	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|417aa|down_6|NZ_CP015817.1_1694511_1695762_-	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|1189aa|down_7|NZ_CP015817.1_1695761_1699328_-	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|244aa|down_8|NZ_CP015817.1_1699474_1700206_-	PRK00102, rnc, ribonuclease III; Reviewed	NA|78aa|down_9|NZ_CP015817.1_1700321_1700555_-	PRK00982, acpP, acyl carrier protein; Provisional
GCF_002140115.1_ASM214011v1	NZ_CP015817	Staphylococcus aureus strain FORC_039 chromosome, complete genome	5	1779618-1779813	5	CRISPRCasFinder	no		DinG,cas3,DEDDh,csa3,WYL	Orphan	TCTATGTTGGGGCCCCGCCAACTTGCA	27	3	10	1779645-1779673|1779645-1779673|1779645-1779673|1779645-1779673|1779645-1779673|1779645-1779673|1779701-1779730|1779758-1779786|1779758-1779786|1779758-1779786	NZ_CP015817.1_834582-834610|NZ_CP015817.1_1564367-1564395|NZ_CP015817.1_1689879-1689907|NZ_CP015817.1_1775677-1775705|NZ_CP015817.1_1876759-1876731|NZ_CP015817.1_2356834-2356806|NZ_CP015817.1_1779813-1779842|NZ_CP015817.1_976509-976481|NZ_CP015817.1_1779814-1779842|NZ_CP015817.1_2088395-2088423	NA	3	3	Orphan	DinG,cas3,DEDDh,csa3,WYL	NA|75aa|up_4|NZ_CP015817.1_1775935_1776160_-,NA|49aa|up_3|NZ_CP015817.1_1776116_1776263_-,NA|78aa|up_1|NZ_CP015817.1_1778371_1778605_+,NA|62aa|up_0|NZ_CP015817.1_1779226_1779412_+,NA|169aa|down_2|NZ_CP015817.1_1781436_1781943_-,NA|24aa|down_4|NZ_CP015817.1_1782991_1783063_+,NA|56aa|down_6|NZ_CP015817.1_1783903_1784071_-	NA|311aa|up_9|NZ_CP015817.1_1770672_1771605_-	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|334aa|up_8|NZ_CP015817.1_1771627_1772629_-	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|242aa|up_7|NZ_CP015817.1_1773066_1773792_+	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|242aa|up_6|NZ_CP015817.1_1773886_1774612_+	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|239aa|up_5|NZ_CP015817.1_1774719_1775436_+	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|75aa|up_4|NZ_CP015817.1_1775935_1776160_-	NA	NA|49aa|up_3|NZ_CP015817.1_1776116_1776263_-	NA	NA|320aa|up_2|NZ_CP015817.1_1776935_1777895_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|78aa|up_1|NZ_CP015817.1_1778371_1778605_+	NA	NA|62aa|up_0|NZ_CP015817.1_1779226_1779412_+	NA	NA|117aa|down_0|NZ_CP015817.1_1780176_1780527_-	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|166aa|down_1|NZ_CP015817.1_1780680_1781178_-	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|169aa|down_2|NZ_CP015817.1_1781436_1781943_-	NA	NA|132aa|down_3|NZ_CP015817.1_1782615_1783011_+	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|24aa|down_4|NZ_CP015817.1_1782991_1783063_+	NA	NA|110aa|down_5|NZ_CP015817.1_1783380_1783710_-	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|56aa|down_6|NZ_CP015817.1_1783903_1784071_-	NA	NA|168aa|down_7|NZ_CP015817.1_1784198_1784702_-	COG0622, COG0622, Predicted phosphoesterase [General function prediction only]	NA|196aa|down_8|NZ_CP015817.1_1784694_1785282_-	PRK14822, PRK14822, XTP/dITP diphosphatase	NA|267aa|down_9|NZ_CP015817.1_1785293_1786094_-	PRK00865, PRK00865, glutamate racemase; Provisional
GCF_002140115.1_ASM214011v1	NZ_CP015817	Staphylococcus aureus strain FORC_039 chromosome, complete genome	6	1798731-1798822	6	CRISPRCasFinder	no		DinG,cas3,DEDDh,csa3,WYL	Orphan	CCTCTTTGATTTTTAATCATTAGA	24	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,WYL	NA|32aa|up_5|NZ_CP015817.1_1791847_1791943_+,NA|359aa|down_7|NZ_CP015817.1_1806997_1808074_-	NA|272aa|up_9|NZ_CP015817.1_1786329_1787145_-	PRK08640, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|589aa|up_8|NZ_CP015817.1_1787144_1788911_-	PRK08641, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|205aa|up_7|NZ_CP015817.1_1788962_1789577_-	cd03497, SQR_TypeB_1_TM, Succinate:quinone oxidoreductase (SQR) Type B subfamily 1, transmembrane subunit; composed of proteins similar to Bacillus subtilis SQR	NA|594aa|up_6|NZ_CP015817.1_1789900_1791682_-	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|32aa|up_5|NZ_CP015817.1_1791847_1791943_+	NA	NA|105aa|up_4|NZ_CP015817.1_1792005_1792320_-	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|783aa|up_3|NZ_CP015817.1_1792492_1794841_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|571aa|up_2|NZ_CP015817.1_1794850_1796563_-	PRK08609, PRK08609, DNA polymerase/3'-5' exonuclease PolX	NA|174aa|up_1|NZ_CP015817.1_1796635_1797157_-	COG1286, CvpA, Uncharacterized membrane protein, required for colicin V production [General function prediction only]	NA|89aa|up_0|NZ_CP015817.1_1797157_1797424_-	PRK14126, PRK14126, cell division protein ZapA; Provisional	NA|801aa|down_0|NZ_CP015817.1_1799041_1801444_-	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|353aa|down_1|NZ_CP015817.1_1801443_1802502_-	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated	NA|247aa|down_2|NZ_CP015817.1_1802881_1803622_-	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis]	NA|108aa|down_3|NZ_CP015817.1_1804006_1804330_-	PRK13312, PRK13312, staphylobilin-forming heme oxygenase IsdG	NA|245aa|down_4|NZ_CP015817.1_1804348_1805083_-	COG4509, COG4509, Uncharacterized protein conserved in bacteria [Function unknown]	NA|323aa|down_5|NZ_CP015817.1_1805144_1806113_-	COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism]	NA|293aa|down_6|NZ_CP015817.1_1806122_1807001_-	TIGR03659, heme_ABC_transporter_heme-binding_protein_isdE, heme ABC transporter, heme-binding protein isdE	NA|359aa|down_7|NZ_CP015817.1_1806997_1808074_-	NA	NA|228aa|down_8|NZ_CP015817.1_1808073_1808757_-	TIGR03656, IsdC, heme uptake protein IsdC	NA|351aa|down_9|NZ_CP015817.1_1808965_1810018_+	COG5386, COG5386, Cell surface protein [Cell envelope biogenesis, outer membrane]
GCF_002140115.1_ASM214011v1	NZ_CP015817	Staphylococcus aureus strain FORC_039 chromosome, complete genome	7	1894983-1895182	7	CRISPRCasFinder	no		DinG,cas3,DEDDh,csa3,WYL	Orphan	AATCCTGATAACCCTAACAATCC	23	0	0	NA	NA	NA	4	4	Orphan	DinG,cas3,DEDDh,csa3,WYL	NA|37aa|up_3|NZ_CP015817.1_1890524_1890635_-,NA|44aa|down_9|NZ_CP015817.1_1903845_1903977_+	NA|93aa|up_9|NZ_CP015817.1_1881700_1881979_+	COG3125, CyoD, Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]	NA|398aa|up_8|NZ_CP015817.1_1882515_1883709_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|406aa|up_7|NZ_CP015817.1_1884159_1885377_+	COG1316, LytR, Transcriptional regulator [Transcription]	NA|157aa|up_6|NZ_CP015817.1_1885424_1885895_+	pfam10804, DUF2538, Protein of unknown function (DUF2538)	NA|145aa|up_5|NZ_CP015817.1_1886049_1886484_+	COG2153, ElaA, Predicted acyltransferase [General function prediction only]	NA|1248aa|up_4|NZ_CP015817.1_1886711_1890455_+	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism]	NA|37aa|up_3|NZ_CP015817.1_1890524_1890635_-	NA	NA|140aa|up_2|NZ_CP015817.1_1890661_1891081_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|337aa|up_1|NZ_CP015817.1_1891233_1892244_+	COG3594, NolL, Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism]	NA|385aa|up_0|NZ_CP015817.1_1892439_1893594_+	PRK07683, PRK07683, aminotransferase A; Validated	NA|394aa|down_0|NZ_CP015817.1_1895267_1896449_+	pfam05543, Peptidase_C47, Staphopain peptidase C47	NA|110aa|down_1|NZ_CP015817.1_1896486_1896816_+	pfam09023, Staphostatin_B, Staphostatin B	NA|274aa|down_2|NZ_CP015817.1_1897053_1897875_-	PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated	NA|268aa|down_3|NZ_CP015817.1_1897867_1898671_-	TIGR03695, menH_SHCHC, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase	NA|558aa|down_4|NZ_CP015817.1_1898657_1900331_-	COG1165, MenD, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]	NA|454aa|down_5|NZ_CP015817.1_1900317_1901679_-	COG1169, MenF, Isochorismate synthase [Coenzyme metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|313aa|down_6|NZ_CP015817.1_1901860_1902799_+	PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated	NA|184aa|down_7|NZ_CP015817.1_1902850_1903402_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|72aa|down_8|NZ_CP015817.1_1903566_1903782_+	COG2314, XynA, Predicted membrane protein [Function unknown]	NA|44aa|down_9|NZ_CP015817.1_1903845_1903977_+	NA
GCF_002140115.1_ASM214011v1	NZ_CP015817	Staphylococcus aureus strain FORC_039 chromosome, complete genome	8	1993453-1993531	8	CRISPRCasFinder	no		DinG,cas3,DEDDh,csa3,WYL	Orphan	CCAGCCTCTGTGTTGGGGCCCCG	23	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,WYL	NA,NA	NA|301aa|up_9|NZ_CP015817.1_1977399_1978302_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|1218aa|up_8|NZ_CP015817.1_1978467_1982121_-	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|1159aa|up_7|NZ_CP015817.1_1982121_1985598_-	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|192aa|up_6|NZ_CP015817.1_1985757_1986333_-	TIGR02227, Inactive_signal_peptidase_IA	NA|175aa|up_5|NZ_CP015817.1_1986348_1986873_-	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|up_4|NZ_CP015817.1_1986877_1987453_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|444aa|up_3|NZ_CP015817.1_1987777_1989109_-	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|402aa|up_2|NZ_CP015817.1_1989459_1990665_+	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|460aa|up_1|NZ_CP015817.1_1990654_1992034_+	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|310aa|up_0|NZ_CP015817.1_1992275_1993205_+	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|415aa|down_0|NZ_CP015817.1_1993655_1994900_-	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_1|NZ_CP015817.1_1995008_1996199_-	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|376aa|down_2|NZ_CP015817.1_1996506_1997634_-	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|126aa|down_3|NZ_CP015817.1_1997995_1998373_-	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|198aa|down_4|NZ_CP015817.1_1998788_1999382_-	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|128aa|down_5|NZ_CP015817.1_1999445_1999829_+	pfam08810, KapB, Kinase associated protein B	NA|802aa|down_6|NZ_CP015817.1_1999959_2002365_+	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|143aa|down_7|NZ_CP015817.1_2002357_2002786_+	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|114aa|down_8|NZ_CP015817.1_2002785_2003127_+	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|499aa|down_9|NZ_CP015817.1_2003119_2004616_+	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed
GCF_002140115.1_ASM214011v1	NZ_CP015817	Staphylococcus aureus strain FORC_039 chromosome, complete genome	9	2208955-2209044	9	CRISPRCasFinder	no	csa3	DinG,cas3,DEDDh,csa3,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,WYL	NA|77aa|up_5|NZ_CP015817.1_2203828_2204059_-,NA|364aa|up_0|NZ_CP015817.1_2207846_2208938_+,NA|35aa|down_0|NZ_CP015817.1_2209379_2209484_-,NA|53aa|down_1|NZ_CP015817.1_2210163_2210322_+	NA|237aa|up_9|NZ_CP015817.1_2199438_2200149_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP015817.1_2200269_2200713_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP015817.1_2200912_2201326_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP015817.1_2201783_2203157_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP015817.1_2203828_2204059_-	NA	NA|313aa|up_4|NZ_CP015817.1_2204089_2205028_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP015817.1_2205461_2206127_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP015817.1_2206278_2206599_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP015817.1_2206600_2207581_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP015817.1_2207846_2208938_+	NA	NA|35aa|down_0|NZ_CP015817.1_2209379_2209484_-	NA	NA|53aa|down_1|NZ_CP015817.1_2210163_2210322_+	NA	NA|286aa|down_2|NZ_CP015817.1_2210979_2211837_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|NZ_CP015817.1_2211904_2212687_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_4|NZ_CP015817.1_2212918_2214724_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|NZ_CP015817.1_2215404_2216943_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|NZ_CP015817.1_2216977_2219110_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|NZ_CP015817.1_2219121_2219556_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|NZ_CP015817.1_2219555_2220662_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|2485aa|down_9|NZ_CP015817.1_2220980_2228435_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain
GCF_002140115.1_ASM214011v1	NZ_CP015817	Staphylococcus aureus strain FORC_039 chromosome, complete genome	10	2322405-2322604	1	CRT	no		DinG,cas3,DEDDh,csa3,WYL	Orphan	CTTCTATGTTGGGGCCCCGCCAACTTGCA	29	3	16	2322434-2322460|2322490-2322519|2322490-2322519|2322490-2322519|2322490-2322519|2322490-2322519|2322490-2322519|2322490-2322519|2322549-2322575|2322549-2322575|2322549-2322575|2322549-2322575|2322549-2322575|2322549-2322575|2322549-2322575|2322549-2322575	NZ_CP015817.1_2322378-2322404|NZ_CP015817.1_1775618-1775647|NZ_CP015817.1_1775730-1775759|NZ_CP015817.1_1117960-1117989|NZ_CP015817.1_166201-166172|NZ_CP015817.1_967162-967133|NZ_CP015817.1_1297302-1297273|NZ_CP015817.1_1972750-1972721|NZ_CP015817.1_834526-834552|NZ_CP015817.1_834582-834608|NZ_CP015817.1_1564367-1564393|NZ_CP015817.1_1689879-1689905|NZ_CP015817.1_1775677-1775703|NZ_CP015817.1_1876759-1876733|NZ_CP015817.1_1993430-1993456|NZ_CP015817.1_2356834-2356808	NA	3	3	Orphan	DinG,cas3,DEDDh,csa3,WYL	NA|55aa|up_9|NZ_CP015817.1_2310961_2311126_+,NA|106aa|up_8|NZ_CP015817.1_2311370_2311688_+,NA|84aa|up_5|NZ_CP015817.1_2318787_2319039_+,NA|62aa|up_0|NZ_CP015817.1_2322178_2322364_+,NA	NA|55aa|up_9|NZ_CP015817.1_2310961_2311126_+	NA	NA|106aa|up_8|NZ_CP015817.1_2311370_2311688_+	NA	NA|1056aa|up_7|NZ_CP015817.1_2313849_2317017_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP015817.1_2317133_2318399_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP015817.1_2318787_2319039_+	NA	NA|255aa|up_4|NZ_CP015817.1_2319030_2319795_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP015817.1_2319956_2320397_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP015817.1_2320389_2321601_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP015817.1_2321702_2322053_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|62aa|up_0|NZ_CP015817.1_2322178_2322364_+	NA	NA|341aa|down_0|NZ_CP015817.1_2322745_2323768_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP015817.1_2323787_2324387_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP015817.1_2324393_2324627_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP015817.1_2324632_2325079_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP015817.1_2325092_2325578_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP015817.1_2325574_2326834_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP015817.1_2326896_2327391_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP015817.1_2327392_2327899_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP015817.1_2327929_2328934_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP015817.1_2329103_2329709_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
GCF_002140115.1_ASM214011v1	NZ_CP015817	Staphylococcus aureus strain FORC_039 chromosome, complete genome	11	2751077-2751212	10	CRISPRCasFinder	no		DinG,cas3,DEDDh,csa3,WYL	Orphan	TTTCGTCGTCCCACCCCAACTTGCA	25	2	14	2751102-2751131|2751102-2751131|2751102-2751131|2751102-2751131|2751102-2751131|2751102-2751131|2751102-2751131|2751102-2751131|2751102-2751131|2751157-2751187|2751157-2751187|2751157-2751187|2751157-2751187|2751157-2751187	NZ_CP015817.1_780873-780844|NZ_CP015817.1_827377-827406|NZ_CP015817.1_870548-870577|NZ_CP015817.1_976450-976421|NZ_CP015817.1_1476071-1476042|NZ_CP015817.1_1850370-1850341|NZ_CP015817.1_2164456-2164427|NZ_CP015817.1_2356890-2356861|NZ_CP015817.1_2751213-2751242|NZ_CP015817.1_284504-284474|NZ_CP015817.1_834582-834612|NZ_CP015817.1_834526-834556|NZ_CP015817.1_1282738-1282768|NZ_CP015817.1_1993430-1993460	NA	2	2	Orphan	DinG,cas3,DEDDh,csa3,WYL	NA,NA|51aa|down_1|NZ_CP015817.1_2754172_2754325_-	NA|159aa|up_9|NZ_CP015817.1_2742575_2743052_-	PRK05528, PRK05528, peptide-methionine (S)-S-oxide reductase	NA|167aa|up_8|NZ_CP015817.1_2743054_2743555_-	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|256aa|up_7|NZ_CP015817.1_2743789_2744557_-	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|231aa|up_6|NZ_CP015817.1_2744553_2745246_-	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|221aa|up_5|NZ_CP015817.1_2745262_2745925_-	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]	NA|187aa|up_4|NZ_CP015817.1_2746773_2747334_-	pfam18665, TetR_C_37, Tetracyclin repressor-like, C-terminal domain	NA|413aa|up_3|NZ_CP015817.1_2747497_2748736_+	TIGR03937, Poly-beta-16-N-acetyl-D-glucosamine_synthase, poly-beta-1,6 N-acetyl-D-glucosamine synthase	NA|102aa|up_2|NZ_CP015817.1_2748699_2749005_+	TIGR03932, IcaD_partial, intracellular adhesion protein D	NA|291aa|up_1|NZ_CP015817.1_2749001_2749874_+	TIGR03933, Poly-beta-16-N-acetyl-D-glucosamine_N-deacetylase, intercellular adhesin biosynthesis polysaccharide N-deacetylase	NA|351aa|up_0|NZ_CP015817.1_2749860_2750913_+	COG3936, COG3936, Protein involved in polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation [Carbohydrate transport and metabolism]	NA|681aa|down_0|NZ_CP015817.1_2751359_2753402_-	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]	NA|51aa|down_1|NZ_CP015817.1_2754172_2754325_-	NA	NA|211aa|down_2|NZ_CP015817.1_2754484_2755117_-	PRK02759, PRK02759, bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA|253aa|down_3|NZ_CP015817.1_2755113_2755872_-	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional	NA|235aa|down_4|NZ_CP015817.1_2755868_2756573_-	PRK13587, PRK13587, 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional	NA|193aa|down_5|NZ_CP015817.1_2756565_2757144_-	PRK13142, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional	NA|193aa|down_6|NZ_CP015817.1_2757140_2757719_-	cd07914, IGPD, Imidazoleglycerol-phosphate dehydratase	NA|338aa|down_7|NZ_CP015817.1_2757687_2758701_-	COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]	NA|417aa|down_8|NZ_CP015817.1_2758716_2759967_-	PRK13770, PRK13770, histidinol dehydrogenase; Provisional	NA|205aa|down_9|NZ_CP015817.1_2759959_2760574_-	PRK13584, hisG, ATP phosphoribosyltransferase
