assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002119725.1_ASM211972v1	NZ_CP021109	Bordetella genomosp. 9 strain AU17164 chromosome, complete genome	1	231981-232089	1	CRISPRCasFinder	no		DinG,DEDDh,cas14j,cas3,csa3	Orphan	CGCGCGGATCCGGCTCCGCCGGTCCGC	27	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas14j,cas3,csa3	NA|110aa|up_6|NZ_CP021109.1_224046_224376_-,NA|994aa|up_5|NZ_CP021109.1_224526_227508_-,NA	NA|328aa|up_9|NZ_CP021109.1_219164_220148_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|686aa|up_8|NZ_CP021109.1_220221_222279_+	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|571aa|up_7|NZ_CP021109.1_222271_223984_+	pfam02538, Hydantoinase_B, Hydantoinase B/oxoprolinase	NA|110aa|up_6|NZ_CP021109.1_224046_224376_-	NA	NA|994aa|up_5|NZ_CP021109.1_224526_227508_-	NA	NA|161aa|up_4|NZ_CP021109.1_227688_228171_-	cd11740, YajQ_like, Proteins similar to Escherichia coli YajQ	NA|171aa|up_3|NZ_CP021109.1_228297_228810_+	pfam09900, DUF2127, Predicted membrane protein (DUF2127)	NA|278aa|up_2|NZ_CP021109.1_228831_229665_-	PRK06180, PRK06180, short chain dehydrogenase; Provisional	NA|304aa|up_1|NZ_CP021109.1_229825_230737_+	pfam06719, AraC_N, AraC-type transcriptional regulator N-terminus	NA|276aa|up_0|NZ_CP021109.1_230911_231739_-	COG4208, CysW, ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]	NA|278aa|down_0|NZ_CP021109.1_232141_232975_-	PRK10971, PRK10971, sulfate/thiosulfate ABC transporter permease CysT	NA|337aa|down_1|NZ_CP021109.1_233203_234214_-	COG4150, CysP, ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|280aa|down_2|NZ_CP021109.1_234370_235210_-	PRK00241, nudC, NAD(+) diphosphatase	NA|165aa|down_3|NZ_CP021109.1_235321_235816_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|245aa|down_4|NZ_CP021109.1_235854_236589_-	PRK11023, PRK11023, divisome-associated lipoprotein YraP	NA|202aa|down_5|NZ_CP021109.1_236585_237191_-	PRK13936, PRK13936, phosphoheptose isomerase; Provisional	NA|172aa|down_6|NZ_CP021109.1_237612_238128_-	PRK14685, PRK14685, hypothetical protein; Provisional	NA|322aa|down_7|NZ_CP021109.1_238187_239153_+	COG0313, COG0313, Predicted methyltransferases [General function prediction only]	NA|212aa|down_8|NZ_CP021109.1_239149_239785_+	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]	NA|382aa|down_9|NZ_CP021109.1_239813_240959_-	PRK10672, PRK10672, endolytic peptidoglycan transglycosylase RlpA
GCF_002119725.1_ASM211972v1	NZ_CP021109	Bordetella genomosp. 9 strain AU17164 chromosome, complete genome	2	385409-385602	2	CRISPRCasFinder	no		DinG,DEDDh,cas14j,cas3,csa3	Orphan	TGGCCGCCGGACATCGTGAAGTTGTC	26	0	0	NA	NA	NA	3	3	Orphan	DinG,DEDDh,cas14j,cas3,csa3	NA|173aa|up_4|NZ_CP021109.1_378306_378825_+,NA|137aa|up_3|NZ_CP021109.1_378969_379380_+,NA|139aa|down_1|NZ_CP021109.1_387032_387449_-	NA|257aa|up_9|NZ_CP021109.1_371085_371856_-	pfam13462, Thioredoxin_4, Thioredoxin	NA|960aa|up_8|NZ_CP021109.1_371889_374769_-	TIGR03744, traC_PFL_4706, conjugative transfer ATPase, PFL_4706 family	NA|144aa|up_7|NZ_CP021109.1_374768_375200_-	TIGR03751, conj_TIGR03751, conjugative transfer region lipoprotein, TIGR03751 family	NA|473aa|up_6|NZ_CP021109.1_375180_376599_-	TIGR03752, conj_TIGR03752, integrating conjugative element protein, PFL_4705 family	NA|315aa|up_5|NZ_CP021109.1_376745_377690_+	COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|173aa|up_4|NZ_CP021109.1_378306_378825_+	NA	NA|137aa|up_3|NZ_CP021109.1_378969_379380_+	NA	NA|510aa|up_2|NZ_CP021109.1_379545_381075_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|192aa|up_1|NZ_CP021109.1_381428_382004_-	pfam13470, PIN_3, PIN domain	NA|156aa|up_0|NZ_CP021109.1_382000_382468_-	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|375aa|down_0|NZ_CP021109.1_385884_387008_-	pfam13683, rve_3, Integrase core domain	NA|139aa|down_1|NZ_CP021109.1_387032_387449_-	NA	NA|838aa|down_2|NZ_CP021109.1_387694_390208_-	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS	NA|235aa|down_3|NZ_CP021109.1_390204_390909_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|347aa|down_4|NZ_CP021109.1_391258_392299_+	pfam01551, Peptidase_M23, Peptidase family M23	NA|328aa|down_5|NZ_CP021109.1_392346_393330_+	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|419aa|down_6|NZ_CP021109.1_393600_394857_+	pfam07399, Na_H_antiport_3, Putative Na+/H+ antiporter	NA|398aa|down_7|NZ_CP021109.1_394992_396186_+	TIGR00210, Sodium/glutamate_symport_carrier_protein, sodium--glutamate symport carrier (gltS)	NA|480aa|down_8|NZ_CP021109.1_396804_398244_+	COG3469, COG3469, Chitinase [Carbohydrate transport and metabolism]	NA|449aa|down_9|NZ_CP021109.1_398309_399656_+	PRK13211, PRK13211, N-acetylglucosamine-binding protein GbpA
GCF_002119725.1_ASM211972v1	NZ_CP021109	Bordetella genomosp. 9 strain AU17164 chromosome, complete genome	3	567680-567784	3	CRISPRCasFinder	no		DinG,DEDDh,cas14j,cas3,csa3	Orphan	CGCGCTTCCCCCTCAAGGGGGCGACGCTGGCGGACCGG	38	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas14j,cas3,csa3	NA,NA	NA|645aa|up_9|NZ_CP021109.1_556344_558279_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|337aa|up_8|NZ_CP021109.1_558278_559289_-	PRK03598, PRK03598, putative efflux pump membrane fusion protein; Provisional	NA|236aa|up_7|NZ_CP021109.1_559492_560200_+	pfam09209, DUF1956, Domain of unknown function (DUF1956)	NA|863aa|up_6|NZ_CP021109.1_560323_562912_+	PRK10833, PRK10833, putative assembly protein; Provisional	NA|128aa|up_5|NZ_CP021109.1_562908_563292_+	pfam03476, MOSC_N, MOSC N-terminal beta barrel domain	NA|412aa|up_4|NZ_CP021109.1_563299_564535_-	pfam03594, BenE, Benzoate membrane transport protein	NA|84aa|up_3|NZ_CP021109.1_564559_564811_-	PRK07118, PRK07118, Fe-S cluster domain-containing protein	NA|168aa|up_2|NZ_CP021109.1_565035_565539_-	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional	NA|202aa|up_1|NZ_CP021109.1_565554_566160_-	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair]	NA|343aa|up_0|NZ_CP021109.1_566596_567625_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|170aa|down_0|NZ_CP021109.1_567875_568385_+	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|634aa|down_1|NZ_CP021109.1_568413_570315_-	cd07756, CYTH-like_Pase_CHAD, Uncharacterized subgroup of the CYTH-like superfamily having an associated CHAD domain	NA|394aa|down_2|NZ_CP021109.1_570691_571873_+	PRK14019, PRK14019, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA|180aa|down_3|NZ_CP021109.1_571926_572466_+	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional	NA|163aa|down_4|NZ_CP021109.1_572449_572938_+	PRK00202, nusB, transcription antitermination factor NusB	NA|322aa|down_5|NZ_CP021109.1_572978_573944_+	PRK05731, PRK05731, thiamine monophosphate kinase; Provisional	NA|169aa|down_6|NZ_CP021109.1_573976_574483_+	pfam04608, PgpA, Phosphatidylglycerophosphatase A	NA|180aa|down_7|NZ_CP021109.1_574479_575019_+	pfam02464, CinA, Competence-damaged protein	NA|274aa|down_8|NZ_CP021109.1_575160_575982_-	PRK00125, pyrF, orotidine 5'-phosphate decarboxylase; Reviewed	NA|440aa|down_9|NZ_CP021109.1_576339_577659_-	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
GCF_002119725.1_ASM211972v1	NZ_CP021109	Bordetella genomosp. 9 strain AU17164 chromosome, complete genome	4	575045-575153	4	CRISPRCasFinder	no		DinG,DEDDh,cas14j,cas3,csa3	Orphan	GAGGAGGAAGCGCGGTAGCGCTGCGGGGGTGG	32	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas14j,cas3,csa3	NA,NA	NA|202aa|up_9|NZ_CP021109.1_565554_566160_-	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair]	NA|343aa|up_8|NZ_CP021109.1_566596_567625_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|170aa|up_7|NZ_CP021109.1_567875_568385_+	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|634aa|up_6|NZ_CP021109.1_568413_570315_-	cd07756, CYTH-like_Pase_CHAD, Uncharacterized subgroup of the CYTH-like superfamily having an associated CHAD domain	NA|394aa|up_5|NZ_CP021109.1_570691_571873_+	PRK14019, PRK14019, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA|180aa|up_4|NZ_CP021109.1_571926_572466_+	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional	NA|163aa|up_3|NZ_CP021109.1_572449_572938_+	PRK00202, nusB, transcription antitermination factor NusB	NA|322aa|up_2|NZ_CP021109.1_572978_573944_+	PRK05731, PRK05731, thiamine monophosphate kinase; Provisional	NA|169aa|up_1|NZ_CP021109.1_573976_574483_+	pfam04608, PgpA, Phosphatidylglycerophosphatase A	NA|180aa|up_0|NZ_CP021109.1_574479_575019_+	pfam02464, CinA, Competence-damaged protein	NA|274aa|down_0|NZ_CP021109.1_575160_575982_-	PRK00125, pyrF, orotidine 5'-phosphate decarboxylase; Reviewed	NA|440aa|down_1|NZ_CP021109.1_576339_577659_-	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|132aa|down_2|NZ_CP021109.1_577676_578072_-	cd14264, DAGK_IM, Integral membrane diacylglycerol kinase	NA|239aa|down_3|NZ_CP021109.1_578249_578966_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|343aa|down_4|NZ_CP021109.1_578962_579991_+	cd08232, idonate-5-DH, L-idonate 5-dehydrogenase	NA|325aa|down_5|NZ_CP021109.1_580052_581027_+	cd13672, PBP2_TRAP_Siap, Substrate-binding domain of a sialic acid binding Tripartite ATP-independent  Periplasmic transport system (SiaP); the type 2 periplasmic-binding protein fold	NA|204aa|down_6|NZ_CP021109.1_581040_581652_+	COG3090, DctM, TRAP-type C4-dicarboxylate transport system, small permease component [Carbohydrate transport and metabolism]	NA|469aa|down_7|NZ_CP021109.1_581689_583096_+	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]	NA|252aa|down_8|NZ_CP021109.1_583132_583888_+	cd05368, DHRS6_like_SDR_c, human DHRS6-like, classical (c) SDRs	NA|288aa|down_9|NZ_CP021109.1_583919_584783_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_002119725.1_ASM211972v1	NZ_CP021109	Bordetella genomosp. 9 strain AU17164 chromosome, complete genome	5	719118-719221	5	CRISPRCasFinder	no		DinG,DEDDh,cas14j,cas3,csa3	Orphan	GCGTCGCCCCCTTCGAGGGGGAGGCGCGTTAGCGCTTC	38	1	4	719156-719183|719156-719183|719156-719183|719156-719183	NZ_CP021109.1_735484-735511|NZ_CP021109.1_1929395-1929422|NZ_CP021109.1_1929461-1929488|NZ_CP021109.1_4265701-4265728	NA	1	1	Orphan	DinG,DEDDh,cas14j,cas3,csa3	NA,NA	NA|583aa|up_9|NZ_CP021109.1_709098_710847_+	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|362aa|up_8|NZ_CP021109.1_710843_711929_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|298aa|up_7|NZ_CP021109.1_711960_712854_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|330aa|up_6|NZ_CP021109.1_712908_713898_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|229aa|up_5|NZ_CP021109.1_713985_714672_-	COG0684, MenG, Demethylmenaquinone methyltransferase [Coenzyme metabolism]	NA|297aa|up_4|NZ_CP021109.1_714834_715725_-	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold	NA|160aa|up_3|NZ_CP021109.1_716025_716505_+	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|165aa|up_2|NZ_CP021109.1_716536_717031_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|355aa|up_1|NZ_CP021109.1_717037_718102_-	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|151aa|up_0|NZ_CP021109.1_718448_718901_-	cd02234, cupin_BLR7677-like, Bradyrhizobium japonicum BLR7677 and related proteins, cupin domain	NA|107aa|down_0|NZ_CP021109.1_720381_720702_+	pfam13663, DUF4148, Domain of unknown function (DUF4148)	NA|252aa|down_1|NZ_CP021109.1_720917_721673_+	pfam05988, DUF899, Bacterial protein of unknown function (DUF899)	NA|116aa|down_2|NZ_CP021109.1_721727_722075_-	COG3791, COG3791, Uncharacterized conserved protein [Function unknown]	NA|556aa|down_3|NZ_CP021109.1_722128_723796_-	pfam13538, UvrD_C_2, UvrD-like helicase C-terminal domain	NA|270aa|down_4|NZ_CP021109.1_723841_724651_-	COG5486, COG5486, Predicted metal-binding integral membrane protein [Function unknown]	NA|201aa|down_5|NZ_CP021109.1_724647_725250_-	COG5588, COG5588, Uncharacterized conserved protein [Function unknown]	NA|386aa|down_6|NZ_CP021109.1_725453_726611_-	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|218aa|down_7|NZ_CP021109.1_726607_727261_-	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]	NA|293aa|down_8|NZ_CP021109.1_727274_728153_-	cd13611, PBP2_YehZ, Substrate-binding domain YehZ of an osmoregulated ABC-type transporter; the type 2 periplasmic-binding protein fold	NA|239aa|down_9|NZ_CP021109.1_728300_729017_-	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]
GCF_002119725.1_ASM211972v1	NZ_CP021109	Bordetella genomosp. 9 strain AU17164 chromosome, complete genome	6	1411334-1411450	6	CRISPRCasFinder	no		DinG,DEDDh,cas14j,cas3,csa3	Orphan	CGCCCCCTTGAGGGGGAAGCGCGCCAGCGCTTCGGGGGTGGGCC	44	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas14j,cas3,csa3	NA|128aa|up_7|NZ_CP021109.1_1403674_1404058_+,NA|131aa|down_1|NZ_CP021109.1_1412182_1412575_-	NA|475aa|up_9|NZ_CP021109.1_1400878_1402303_-	cd07114, ALDH_DhaS, Uncharacterized Candidatus pelagibacter aldehyde dehydrogenase, DhaS-like	NA|323aa|up_8|NZ_CP021109.1_1402522_1403491_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|128aa|up_7|NZ_CP021109.1_1403674_1404058_+	NA	NA|390aa|up_6|NZ_CP021109.1_1405040_1406210_+	cd06336, PBP1_ABC_ligand_binding-like, type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions	NA|289aa|up_5|NZ_CP021109.1_1406226_1407093_+	cd06582, TM_PBP1_LivH_like, Transmembrane subunit (TM) of Escherichia coli LivH and related proteins	NA|329aa|up_4|NZ_CP021109.1_1407093_1408080_+	cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of Escherichia coli LivM and related proteins	NA|261aa|up_3|NZ_CP021109.1_1408076_1408859_+	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system	NA|238aa|up_2|NZ_CP021109.1_1408845_1409559_+	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]	NA|269aa|up_1|NZ_CP021109.1_1409562_1410369_+	cd07729, AHL_lactonase_MBL-fold, quorum-quenching N-acyl-homoserine lactonase, MBL-fold metallo-hydrolase domain	NA|211aa|up_0|NZ_CP021109.1_1410603_1411236_-	PRK13972, PRK13972, GSH-dependent disulfide bond oxidoreductase; Provisional	NA|209aa|down_0|NZ_CP021109.1_1411473_1412100_-	cd03180, GST_C_2, C-terminal, alpha helical domain of an unknown subfamily 2 of Glutathione S-transferases	NA|131aa|down_1|NZ_CP021109.1_1412182_1412575_-	NA	NA|484aa|down_2|NZ_CP021109.1_1412628_1414080_-	PRK09425, prpD, bifunctional 2-methylcitrate dehydratase/aconitate hydratase	NA|389aa|down_3|NZ_CP021109.1_1414099_1415266_-	PRK12351, PRK12351, methylcitrate synthase; Provisional	NA|298aa|down_4|NZ_CP021109.1_1415318_1416212_-	PRK11320, prpB, 2-methylisocitrate lyase; Provisional	NA|330aa|down_5|NZ_CP021109.1_1416482_1417472_-	PRK05442, PRK05442, malate dehydrogenase; Provisional	NA|261aa|down_6|NZ_CP021109.1_1417756_1418539_+	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|138aa|down_7|NZ_CP021109.1_1418659_1419073_+	TIGR02970, Succinate_dehydrogenase_cytochrome_b556_subunit, succinate dehydrogenase, cytochrome b556 subunit	NA|128aa|down_8|NZ_CP021109.1_1419075_1419459_+	cd03494, SQR_TypeC_SdhD, Succinate:quinone oxidoreductase (SQR) Type C subfamily, Succinate dehydrogenase D (SdhD) subunit; SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol	NA|593aa|down_9|NZ_CP021109.1_1419462_1421241_+	PRK07057, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed
GCF_002119725.1_ASM211972v1	NZ_CP021109	Bordetella genomosp. 9 strain AU17164 chromosome, complete genome	7	1416301-1416392	7	CRISPRCasFinder	no		DinG,DEDDh,cas14j,cas3,csa3	Orphan	CCGCCGGTCCGCCAGCGTCGCCCCCT	26	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas14j,cas3,csa3	NA|131aa|up_3|NZ_CP021109.1_1412182_1412575_-,NA	NA|329aa|up_9|NZ_CP021109.1_1407093_1408080_+	cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of Escherichia coli LivM and related proteins	NA|261aa|up_8|NZ_CP021109.1_1408076_1408859_+	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system	NA|238aa|up_7|NZ_CP021109.1_1408845_1409559_+	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]	NA|269aa|up_6|NZ_CP021109.1_1409562_1410369_+	cd07729, AHL_lactonase_MBL-fold, quorum-quenching N-acyl-homoserine lactonase, MBL-fold metallo-hydrolase domain	NA|211aa|up_5|NZ_CP021109.1_1410603_1411236_-	PRK13972, PRK13972, GSH-dependent disulfide bond oxidoreductase; Provisional	NA|209aa|up_4|NZ_CP021109.1_1411473_1412100_-	cd03180, GST_C_2, C-terminal, alpha helical domain of an unknown subfamily 2 of Glutathione S-transferases	NA|131aa|up_3|NZ_CP021109.1_1412182_1412575_-	NA	NA|484aa|up_2|NZ_CP021109.1_1412628_1414080_-	PRK09425, prpD, bifunctional 2-methylcitrate dehydratase/aconitate hydratase	NA|389aa|up_1|NZ_CP021109.1_1414099_1415266_-	PRK12351, PRK12351, methylcitrate synthase; Provisional	NA|298aa|up_0|NZ_CP021109.1_1415318_1416212_-	PRK11320, prpB, 2-methylisocitrate lyase; Provisional	NA|330aa|down_0|NZ_CP021109.1_1416482_1417472_-	PRK05442, PRK05442, malate dehydrogenase; Provisional	NA|261aa|down_1|NZ_CP021109.1_1417756_1418539_+	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|138aa|down_2|NZ_CP021109.1_1418659_1419073_+	TIGR02970, Succinate_dehydrogenase_cytochrome_b556_subunit, succinate dehydrogenase, cytochrome b556 subunit	NA|128aa|down_3|NZ_CP021109.1_1419075_1419459_+	cd03494, SQR_TypeC_SdhD, Succinate:quinone oxidoreductase (SQR) Type C subfamily, Succinate dehydrogenase D (SdhD) subunit; SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol	NA|593aa|down_4|NZ_CP021109.1_1419462_1421241_+	PRK07057, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|239aa|down_5|NZ_CP021109.1_1421254_1421971_+	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|87aa|down_6|NZ_CP021109.1_1422307_1422568_+	COG2938, COG2938, Uncharacterized conserved protein [Function unknown]	NA|435aa|down_7|NZ_CP021109.1_1422587_1423892_+	PRK05614, gltA, citrate synthase	NA|150aa|down_8|NZ_CP021109.1_1424029_1424479_-	pfam09980, DUF2214, Predicted membrane protein (DUF2214)	NA|769aa|down_9|NZ_CP021109.1_1424719_1427026_-	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
GCF_002119725.1_ASM211972v1	NZ_CP021109	Bordetella genomosp. 9 strain AU17164 chromosome, complete genome	8	1597029-1597149	8	CRISPRCasFinder	no		DinG,DEDDh,cas14j,cas3,csa3	Orphan	AGGCGCGCCCCCTTGAGGGGGAAGCGCGTCAGCGCTTCGGGGGTGG	46	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas14j,cas3,csa3	NA,NA	NA|214aa|up_9|NZ_CP021109.1_1586592_1587234_-	PRK13263, ureE, urease accessory protein UreE; Provisional	NA|568aa|up_8|NZ_CP021109.1_1587267_1588971_-	PRK13207, ureC, urease subunit alpha; Reviewed	NA|102aa|up_7|NZ_CP021109.1_1589017_1589323_-	PRK13203, ureB, urease subunit beta; Reviewed	NA|209aa|up_6|NZ_CP021109.1_1589339_1589966_-	pfam04955, HupE_UreJ, HupE / UreJ protein	NA|101aa|up_5|NZ_CP021109.1_1590013_1590316_-	PRK13241, ureA, urease subunit gamma; Provisional	NA|291aa|up_4|NZ_CP021109.1_1590328_1591201_-	COG0829, UreH, Urease accessory protein UreH [Posttranslational modification, protein turnover, chaperones]	NA|209aa|up_3|NZ_CP021109.1_1591522_1592149_-	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|906aa|up_2|NZ_CP021109.1_1592204_1594922_+	PRK05755, PRK05755, DNA polymerase I; Provisional	NA|324aa|up_1|NZ_CP021109.1_1595001_1595973_+	PRK06139, PRK06139, SDR family oxidoreductase	NA|264aa|up_0|NZ_CP021109.1_1596126_1596918_+	pfam01738, DLH, Dienelactone hydrolase family	NA|555aa|down_0|NZ_CP021109.1_1597151_1598816_-	COG1283, NptA, Na+/phosphate symporter [Inorganic ion transport and metabolism]	NA|464aa|down_1|NZ_CP021109.1_1599053_1600445_+	TIGR00720, hypothetical_protein_NEICINOT_00681, L-serine dehydratase, iron-sulfur-dependent, single chain form	NA|291aa|down_2|NZ_CP021109.1_1600715_1601588_-	PRK05457, PRK05457, protease HtpX	NA|294aa|down_3|NZ_CP021109.1_1601773_1602655_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|284aa|down_4|NZ_CP021109.1_1602669_1603521_+	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|382aa|down_5|NZ_CP021109.1_1603784_1604930_-	COG4638, HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only]	NA|322aa|down_6|NZ_CP021109.1_1605086_1606052_-	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|77aa|down_7|NZ_CP021109.1_1606334_1606565_+	PRK00977, PRK00977, exodeoxyribonuclease VII small subunit; Provisional	NA|304aa|down_8|NZ_CP021109.1_1606561_1607473_+	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|630aa|down_9|NZ_CP021109.1_1607520_1609410_+	PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
GCF_002119725.1_ASM211972v1	NZ_CP021109	Bordetella genomosp. 9 strain AU17164 chromosome, complete genome	9	1639201-1639288	9	CRISPRCasFinder	no		DinG,DEDDh,cas14j,cas3,csa3	Orphan	GGCGGACCGGCGGAGCCGGATCCGCGGCGT	30	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas14j,cas3,csa3	NA|62aa|up_3|NZ_CP021109.1_1635174_1635360_-,NA|66aa|up_2|NZ_CP021109.1_1635656_1635854_+,NA	NA|279aa|up_9|NZ_CP021109.1_1628328_1629165_-	TIGR03464, HpnC, squalene synthase HpnC	NA|381aa|up_8|NZ_CP021109.1_1629352_1630495_+	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases	NA|239aa|up_7|NZ_CP021109.1_1630655_1631372_+	PRK07577, PRK07577, SDR family oxidoreductase	NA|460aa|up_6|NZ_CP021109.1_1631398_1632778_+	PRK11823, PRK11823, DNA repair protein RadA; Provisional	NA|302aa|up_5|NZ_CP021109.1_1633354_1634260_-	pfam03961, FapA, Flagellar Assembly Protein A	NA|139aa|up_4|NZ_CP021109.1_1634450_1634867_-	PRK05753, PRK05753, nucleoside diphosphate kinase regulator; Provisional	NA|62aa|up_3|NZ_CP021109.1_1635174_1635360_-	NA	NA|66aa|up_2|NZ_CP021109.1_1635656_1635854_+	NA	NA|851aa|up_1|NZ_CP021109.1_1636057_1638610_+	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|143aa|up_0|NZ_CP021109.1_1638606_1639035_+	cd14773, TrHb2_PhHbO-like_O, Truncated hemoglobins, group 2 (O); Pseudoalteromonas haloplanktis PhHbO like	NA|240aa|down_0|NZ_CP021109.1_1639355_1640075_+	PRK01723, PRK01723, 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	NA|367aa|down_1|NZ_CP021109.1_1640203_1641304_+	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold	NA|376aa|down_2|NZ_CP021109.1_1641309_1642437_+	PRK11607, potG, putrescine ABC transporter ATP-binding subunit PotG	NA|307aa|down_3|NZ_CP021109.1_1642433_1643354_+	PRK10683, PRK10683, putrescine transporter subunit: membrane component of ABC superfamily; Provisional	NA|267aa|down_4|NZ_CP021109.1_1643350_1644151_+	PRK10592, PRK10592, putrescine transporter subunit: membrane component of ABC superfamily; Provisional	NA|119aa|down_5|NZ_CP021109.1_1644147_1644504_+	cd03035, ArsC_Yffb, Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC	NA|231aa|down_6|NZ_CP021109.1_1644517_1645210_+	PRK00802, PRK00802, DNA-3-methyladenine glycosylase	NA|250aa|down_7|NZ_CP021109.1_1645261_1646011_-	pfam10707, YrbL-PhoP_reg, PhoP regulatory network protein YrbL	NA|457aa|down_8|NZ_CP021109.1_1646182_1647553_+	COG1322, COG1322, Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]	NA|226aa|down_9|NZ_CP021109.1_1647635_1648313_+	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA
GCF_002119725.1_ASM211972v1	NZ_CP021109	Bordetella genomosp. 9 strain AU17164 chromosome, complete genome	10	2138845-2138917	10	CRISPRCasFinder	no		DinG,DEDDh,cas14j,cas3,csa3	Orphan	AGCGCTTCGGGGGTGGGCTTCCCT	24	1	4	2138869-2138893|2138869-2138893|2138869-2138893|2138869-2138893	NZ_CP021109.1_567703-567679|NZ_CP021109.1_4078887-4078863|NZ_CP021109.1_1929361-1929385|NZ_CP021109.1_1929426-1929450	NA	1	1	Orphan	DinG,DEDDh,cas14j,cas3,csa3	NA,NA	NA|286aa|up_9|NZ_CP021109.1_2128366_2129224_-	COG2961, ComJ, Protein involved in catabolism of external DNA [General function prediction only]	NA|250aa|up_8|NZ_CP021109.1_2129246_2129996_-	PRK09454, ugpQ, cytoplasmic glycerophosphodiester phosphodiesterase; Provisional	NA|652aa|up_7|NZ_CP021109.1_2130190_2132146_+	PRK10788, PRK10788, periplasmic folding chaperone; Provisional	NA|222aa|up_6|NZ_CP021109.1_2132346_2133012_-	cd01822, Lysophospholipase_L1_like, Lysophospholipase L1-like subgroup of SGNH-hydrolases	NA|226aa|up_5|NZ_CP021109.1_2133010_2133688_+	COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|471aa|up_4|NZ_CP021109.1_2133704_2135117_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|71aa|up_3|NZ_CP021109.1_2135320_2135533_-	pfam06348, DUF1059, Protein of unknown function (DUF1059)	NA|328aa|up_2|NZ_CP021109.1_2135660_2136644_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|335aa|up_1|NZ_CP021109.1_2136759_2137764_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|270aa|up_0|NZ_CP021109.1_2137866_2138676_+	PRK05463, PRK05463, putative hydro-lyase	NA|435aa|down_0|NZ_CP021109.1_2139023_2140328_+	cd06340, PBP1_ABC_ligand_binding-like, type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions	NA|284aa|down_1|NZ_CP021109.1_2140393_2141245_+	cd06582, TM_PBP1_LivH_like, Transmembrane subunit (TM) of Escherichia coli LivH and related proteins	NA|333aa|down_2|NZ_CP021109.1_2141246_2142245_+	cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of Escherichia coli LivM and related proteins	NA|241aa|down_3|NZ_CP021109.1_2142231_2142954_+	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system	NA|236aa|down_4|NZ_CP021109.1_2142958_2143666_+	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]	NA|430aa|down_5|NZ_CP021109.1_2143854_2145144_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|259aa|down_6|NZ_CP021109.1_2145201_2145978_-	pfam11738, DUF3298, Protein of unknown function (DUF3298)	NA|259aa|down_7|NZ_CP021109.1_2146087_2146864_-	COG0095, LplA, Lipoate-protein ligase A [Coenzyme metabolism]	NA|92aa|down_8|NZ_CP021109.1_2146860_2147136_-	pfam10437, Lip_prot_lig_C, Bacterial lipoate protein ligase C-terminus	NA|301aa|down_9|NZ_CP021109.1_2147190_2148093_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter
GCF_002119725.1_ASM211972v1	NZ_CP021109	Bordetella genomosp. 9 strain AU17164 chromosome, complete genome	11	2723838-2723937	11	CRISPRCasFinder	no		DinG,DEDDh,cas14j,cas3,csa3	Orphan	GAGGGGGAAGCGCGCCAGCGCTTCGGGGGTGGGC	34	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas14j,cas3,csa3	NA|163aa|up_2|NZ_CP021109.1_2719880_2720369_-,NA	NA|180aa|up_9|NZ_CP021109.1_2709181_2709721_+	PRK07963, fliN, flagellar motor switch protein FliN; Validated	NA|110aa|up_8|NZ_CP021109.1_2709725_2710055_+	PRK11486, PRK11486, flagellar type III secretion system protein FliO	NA|252aa|up_7|NZ_CP021109.1_2710119_2710875_+	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed	NA|90aa|up_6|NZ_CP021109.1_2710888_2711158_+	PRK05700, fliQ, flagellar type III secretion system protein FliQ	NA|263aa|up_5|NZ_CP021109.1_2711208_2711997_+	PRK05701, fliR, flagellar type III secretion system protein FliR	NA|1288aa|up_4|NZ_CP021109.1_2712163_2716027_+	pfam13678, Peptidase_M85, NFkB-p65-degrading zinc protease	NA|545aa|up_3|NZ_CP021109.1_2716072_2717707_-	cd16017, LptA, Lipooligosaccharide Phosphoethanolamine Transferase A (LptA) or Lipid A Phosphoethanolamine Transferase	NA|163aa|up_2|NZ_CP021109.1_2719880_2720369_-	NA	NA|627aa|up_1|NZ_CP021109.1_2720376_2722257_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|411aa|up_0|NZ_CP021109.1_2722311_2723544_-	PRK08870, flgL, flagellar hook-associated protein FlgL; Reviewed	NA|560aa|down_0|NZ_CP021109.1_2723951_2725631_-	PRK08147, flgK, flagellar hook-associated protein FlgK; Validated	NA|379aa|down_1|NZ_CP021109.1_2725738_2726875_-	PRK12713, flgJ, flagellar rod assembly protein/muramidase FlgJ; Provisional	NA|356aa|down_2|NZ_CP021109.1_2726887_2727955_-	PRK05303, flgI, flagellar basal body P-ring protein FlgI	NA|232aa|down_3|NZ_CP021109.1_2728235_2728931_-	PRK12700, flgH, flagellar basal body L-ring protein; Reviewed	NA|262aa|down_4|NZ_CP021109.1_2728930_2729716_-	PRK12694, flgG, flagellar basal body rod protein FlgG; Reviewed	NA|254aa|down_5|NZ_CP021109.1_2729764_2730526_-	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed	NA|403aa|down_6|NZ_CP021109.1_2730558_2731767_-	PRK05682, flgE, flagellar hook protein FlgE; Validated	NA|232aa|down_7|NZ_CP021109.1_2731851_2732547_-	PRK12633, flgD, flagellar basal body rod modification protein; Provisional	NA|139aa|down_8|NZ_CP021109.1_2732587_2733004_-	PRK05681, flgC, flagellar basal body rod protein FlgC; Reviewed	NA|136aa|down_9|NZ_CP021109.1_2733023_2733431_-	PRK05680, flgB, flagellar basal body rod protein FlgB; Reviewed
GCF_002119725.1_ASM211972v1	NZ_CP021109	Bordetella genomosp. 9 strain AU17164 chromosome, complete genome	12	3527481-3527594	12	CRISPRCasFinder	no		DinG,DEDDh,cas14j,cas3,csa3	Orphan	GACACACGGGCTGCCTCCCCGCATCCCCACGGGACACGGGGA	42	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas14j,cas3,csa3	NA,NA|213aa|down_9|NZ_CP021109.1_3537986_3538625_+	NA|629aa|up_9|NZ_CP021109.1_3514055_3515942_-	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH	NA|214aa|up_8|NZ_CP021109.1_3516141_3516783_-	COG0293, FtsJ, 23S rRNA methylase [Translation, ribosomal structure and biogenesis]	NA|206aa|up_7|NZ_CP021109.1_3516800_3517418_+	smart01103, CRS1_YhbY, Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly	NA|159aa|up_6|NZ_CP021109.1_3517511_3517988_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|439aa|up_5|NZ_CP021109.1_3518453_3519770_-	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|214aa|up_4|NZ_CP021109.1_3520060_3520702_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|261aa|up_3|NZ_CP021109.1_3520753_3521536_-	PRK07024, PRK07024, SDR family oxidoreductase	NA|300aa|up_2|NZ_CP021109.1_3521611_3522511_-	NF033391, lipid_A_LpxO, lipid A hydroxylase LpxO	NA|1078aa|up_1|NZ_CP021109.1_3522849_3526083_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|376aa|up_0|NZ_CP021109.1_3526093_3527221_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|184aa|down_0|NZ_CP021109.1_3527627_3528179_-	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|265aa|down_1|NZ_CP021109.1_3528189_3528984_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|269aa|down_2|NZ_CP021109.1_3529011_3529818_-	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|349aa|down_3|NZ_CP021109.1_3529810_3530857_-	cd13649, PBP2_Cae31940, Substrate binding domain of an uncharacterized protein similar to ABC-type transporter for thiamin biosynthetic pathway intermediates; a member of the type 2 periplasmic binding fold superfamily	NA|412aa|down_4|NZ_CP021109.1_3530880_3532116_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|203aa|down_5|NZ_CP021109.1_3532210_3532819_-	PRK00076, recR, recombination protein RecR; Reviewed	NA|109aa|down_6|NZ_CP021109.1_3532883_3533210_-	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|856aa|down_7|NZ_CP021109.1_3533258_3535826_-	PRK12323, PRK12323, DNA polymerase III subunit gamma/tau	NA|288aa|down_8|NZ_CP021109.1_3537123_3537987_+	cd07731, ComA-like_MBL-fold, Competence protein ComA, ComEC and related proteins; MBL-fold metallo hydrolase domain	NA|213aa|down_9|NZ_CP021109.1_3537986_3538625_+	NA
GCF_002119725.1_ASM211972v1	NZ_CP021109	Bordetella genomosp. 9 strain AU17164 chromosome, complete genome	13	3764114-3764217	13	CRISPRCasFinder	no		DinG,DEDDh,cas14j,cas3,csa3	Orphan	CGCGCTTCCCCCTCAAGGGGGCGACGCTGGCGGACCGG	38	1	1	3764152-3764179	NZ_CP021109.1_735566-735539	NA	1	1	Orphan	DinG,DEDDh,cas14j,cas3,csa3	NA|240aa|up_7|NZ_CP021109.1_3754413_3755133_-,NA	NA|152aa|up_9|NZ_CP021109.1_3753464_3753920_-	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|106aa|up_8|NZ_CP021109.1_3753981_3754299_-	pfam05957, DUF883, Bacterial protein of unknown function (DUF883)	NA|240aa|up_7|NZ_CP021109.1_3754413_3755133_-	NA	NA|473aa|up_6|NZ_CP021109.1_3755516_3756935_+	PRK10637, cysG, siroheme synthase CysG	NA|213aa|up_5|NZ_CP021109.1_3756939_3757578_-	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed	NA|482aa|up_4|NZ_CP021109.1_3757648_3759094_-	COG2027, DacB, D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) [Cell envelope biogenesis, outer membrane]	NA|357aa|up_3|NZ_CP021109.1_3759404_3760475_+	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|380aa|up_2|NZ_CP021109.1_3760480_3761620_+	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional	NA|114aa|up_1|NZ_CP021109.1_3761774_3762116_+	PRK05585, yajC, preprotein translocase subunit YajC; Validated	NA|626aa|up_0|NZ_CP021109.1_3762215_3764093_+	PRK05812, secD, preprotein translocase subunit SecD; Reviewed	NA|310aa|down_0|NZ_CP021109.1_3764569_3765499_+	PRK13022, secF, protein translocase subunit SecF	NA|318aa|down_1|NZ_CP021109.1_3765547_3766501_-	cd11592, Agmatinase_PAH, Agmatinase-like family includes proclavaminic acid amidinohydrolase	NA|201aa|down_2|NZ_CP021109.1_3766505_3767108_-	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|234aa|down_3|NZ_CP021109.1_3767116_3767818_-	pfam09347, DUF1989, Domain of unknown function (DUF1989)	NA|444aa|down_4|NZ_CP021109.1_3767829_3769161_-	cd03884, M20_bAS, M20 Peptidase beta-alanine synthase, an amidohydrolase	NA|267aa|down_5|NZ_CP021109.1_3769147_3769948_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|214aa|down_6|NZ_CP021109.1_3770021_3770663_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|238aa|down_7|NZ_CP021109.1_3770662_3771376_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|277aa|down_8|NZ_CP021109.1_3771386_3772217_-	cd13625, PBP2_AA_binding_like_1, Substrate-binding domain of putative amino acid-binding protein; the type 2 periplasmic-binding protein fold	NA|243aa|down_9|NZ_CP021109.1_3772488_3773217_-	cd02588, HAD_L2-DEX, L-2-haloacid dehalogenase
GCF_002119725.1_ASM211972v1	NZ_CP021109	Bordetella genomosp. 9 strain AU17164 chromosome, complete genome	14	3798943-3799035	14	CRISPRCasFinder	no		DinG,DEDDh,cas14j,cas3,csa3	Orphan	GCGTTGGCGGGTCGGCGAAGCCGG	24	1	2	3798967-3799011|3798967-3799011	NZ_CP021109.1_3798751-3798795|NZ_CP021109.1_3798859-3798903	NA	1	1	Orphan	DinG,DEDDh,cas14j,cas3,csa3	NA,NA|87aa|down_4|NZ_CP021109.1_3803853_3804114_-,NA|136aa|down_9|NZ_CP021109.1_3812723_3813131_-	NA|351aa|up_9|NZ_CP021109.1_3788165_3789218_+	cd06273, PBP1_LacI-like, ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors	NA|263aa|up_8|NZ_CP021109.1_3789264_3790053_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|328aa|up_7|NZ_CP021109.1_3790163_3791147_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|524aa|up_6|NZ_CP021109.1_3791229_3792801_+	cd17631, FACL_FadD13-like, fatty acyl-CoA synthetase, including FadD13	NA|279aa|up_5|NZ_CP021109.1_3792841_3793678_+	PRK06224, PRK06224, citryl-CoA lyase	NA|259aa|up_4|NZ_CP021109.1_3793674_3794451_+	PRK07577, PRK07577, SDR family oxidoreductase	NA|271aa|up_3|NZ_CP021109.1_3794447_3795260_+	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG	NA|251aa|up_2|NZ_CP021109.1_3795287_3796040_-	cd03389, PAP2_lipid_A_1_phosphatase, PAP2_like proteins, Lipid A 1-phosphatase subfamily	NA|484aa|up_1|NZ_CP021109.1_3796210_3797662_+	PRK14325, PRK14325, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	NA|336aa|up_0|NZ_CP021109.1_3797658_3798666_+	pfam02562, PhoH, PhoH-like protein	NA|158aa|down_0|NZ_CP021109.1_3799070_3799544_+	PRK00016, PRK00016, metal-binding heat shock protein; Provisional	NA|298aa|down_1|NZ_CP021109.1_3799645_3800539_+	COG4535, CorC, Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]	NA|549aa|down_2|NZ_CP021109.1_3800535_3802182_+	PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed	NA|351aa|down_3|NZ_CP021109.1_3802200_3803253_-	cd19102, AKR_unchar, uncharacterized aldo-keto reductase (AKR) superfamily protein	NA|87aa|down_4|NZ_CP021109.1_3803853_3804114_-	NA	NA|1369aa|down_5|NZ_CP021109.1_3804405_3808512_+	smart00138, MeTrc, Methyltransferase, chemotaxis proteins	NA|128aa|down_6|NZ_CP021109.1_3808580_3808964_-	pfam13665, DUF4150, Domain of unknown function (DUF4150)	NA|351aa|down_7|NZ_CP021109.1_3809092_3810145_-	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|862aa|down_8|NZ_CP021109.1_3810141_3812727_-	pfam09937, DUF2169, Uncharacterized protein conserved in bacteria (DUF2169)	NA|136aa|down_9|NZ_CP021109.1_3812723_3813131_-	NA
GCF_002119725.1_ASM211972v1	NZ_CP021109	Bordetella genomosp. 9 strain AU17164 chromosome, complete genome	15	3915081-3915153	15	CRISPRCasFinder	no	csa3	DinG,DEDDh,cas14j,cas3,csa3	Type I-A	CGCCCCCTTGAGGGGGAAGCGCG	23	1	1	3915104-3915130	NZ_CP021109.1_735474-735500	NA	1	1	Orphan	DinG,DEDDh,cas14j,cas3,csa3	NA|161aa|up_4|NZ_CP021109.1_3905421_3905904_+,NA|1311aa|up_1|NZ_CP021109.1_3909152_3913085_+,NA	csa3|102aa|up_9|NZ_CP021109.1_3900540_3900846_+	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|189aa|up_8|NZ_CP021109.1_3900865_3901432_+	cd08899, SRPBCC_CalC_Aha1-like_6, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins	NA|744aa|up_7|NZ_CP021109.1_3901489_3903721_-	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]	NA|335aa|up_6|NZ_CP021109.1_3903737_3904742_-	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]	NA|180aa|up_5|NZ_CP021109.1_3904754_3905294_-	PRK11433, PRK11433, aldehyde oxidoreductase 2Fe-2S subunit; Provisional	NA|161aa|up_4|NZ_CP021109.1_3905421_3905904_+	NA	NA|771aa|up_3|NZ_CP021109.1_3905803_3908116_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|248aa|up_2|NZ_CP021109.1_3908274_3909018_+	cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)	NA|1311aa|up_1|NZ_CP021109.1_3909152_3913085_+	NA	NA|554aa|up_0|NZ_CP021109.1_3913138_3914800_-	COG4664, FcbT3, TRAP-type mannitol/chloroaromatic compound transport system, large permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|198aa|down_0|NZ_CP021109.1_3915174_3915768_-	COG4665, FcbT2, TRAP-type mannitol/chloroaromatic compound transport system, small permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|366aa|down_1|NZ_CP021109.1_3915778_3916876_-	cd13682, PBP2_TRAP_alpha-ketoacid, Substrate-binding component of an alpha-keto acid binding Tripartite ATP-independent Periplasmic transporter and related proteins; contains the type 2 periplasmic-binding protein fold	NA|568aa|down_2|NZ_CP021109.1_3917199_3918903_+	cd01359, Argininosuccinate_lyase, Argininosuccinate lyase (argininosuccinase, ASAL)	NA|141aa|down_3|NZ_CP021109.1_3918854_3919277_-	cd07251, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|245aa|down_4|NZ_CP021109.1_3919371_3920106_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|324aa|down_5|NZ_CP021109.1_3920546_3921518_+	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily	NA|274aa|down_6|NZ_CP021109.1_3921537_3922359_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|258aa|down_7|NZ_CP021109.1_3922355_3923129_+	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters	NA|244aa|down_8|NZ_CP021109.1_3923200_3923932_+	COG3473, COG3473, Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|506aa|down_9|NZ_CP021109.1_3923928_3925446_+	PRK13404, PRK13404, dihydropyrimidinase; Provisional
GCF_002119725.1_ASM211972v1	NZ_CP021109	Bordetella genomosp. 9 strain AU17164 chromosome, complete genome	16	4232971-4233066	16	CRISPRCasFinder	no		DinG,DEDDh,cas14j,cas3,csa3	Orphan	GGGAAGCGCGCCAGCGCTTCGGGGGTGGGCTT	32	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas14j,cas3,csa3	NA|108aa|up_7|NZ_CP021109.1_4225505_4225829_-,NA|75aa|up_4|NZ_CP021109.1_4227229_4227454_+,NA	NA|310aa|up_9|NZ_CP021109.1_4224084_4225014_+	COG2423, COG2423, Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]	NA|97aa|up_8|NZ_CP021109.1_4225106_4225397_-	cd00207, fer2, 2Fe-2S iron-sulfur cluster binding domain	NA|108aa|up_7|NZ_CP021109.1_4225505_4225829_-	NA	NA|101aa|up_6|NZ_CP021109.1_4225825_4226128_-	COG0633, Fdx, Ferredoxin [Energy production and conversion]	NA|244aa|up_5|NZ_CP021109.1_4226143_4226875_-	pfam14518, Haem_oxygenas_2, Iron-containing redox enzyme	NA|75aa|up_4|NZ_CP021109.1_4227229_4227454_+	NA	NA|127aa|up_3|NZ_CP021109.1_4227586_4227967_+	PRK10856, PRK10856, cytoskeleton protein RodZ	NA|88aa|up_2|NZ_CP021109.1_4228124_4228388_+	pfam07369, DUF1488, Protein of unknown function (DUF1488)	NA|504aa|up_1|NZ_CP021109.1_4228703_4230215_+	PRK13274, mdoG, glucan biosynthesis protein G; Provisional	NA|843aa|up_0|NZ_CP021109.1_4230195_4232724_+	COG2943, MdoH, Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]	NA|318aa|down_0|NZ_CP021109.1_4233068_4234022_-	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases	NA|293aa|down_1|NZ_CP021109.1_4234068_4234947_-	cd03020, DsbA_DsbC_DsbG, DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold	NA|390aa|down_2|NZ_CP021109.1_4234996_4236166_-	PRK07608, PRK07608, UbiH/UbiF family hydroxylase	NA|437aa|down_3|NZ_CP021109.1_4236162_4237473_-	pfam03562, MltA, MltA specific insert domain	NA|125aa|down_4|NZ_CP021109.1_4237538_4237913_-	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|239aa|down_5|NZ_CP021109.1_4238009_4238726_+	PRK05581, PRK05581, ribulose-phosphate 3-epimerase; Validated	NA|236aa|down_6|NZ_CP021109.1_4238838_4239546_+	PRK13222, PRK13222, N-acetylmuramic acid 6-phosphate phosphatase MupP	NA|507aa|down_7|NZ_CP021109.1_4239808_4241329_+	PRK13565, PRK13565, anthranilate synthase component I; Provisional	NA|191aa|down_8|NZ_CP021109.1_4241358_4241931_+	PRK05670, PRK05670, anthranilate synthase component II; Provisional	NA|342aa|down_9|NZ_CP021109.1_4241954_4242980_+	PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional
GCF_002119725.1_ASM211972v1	NZ_CP021109	Bordetella genomosp. 9 strain AU17164 chromosome, complete genome	17	4434102-4434209	17	CRISPRCasFinder	no		DinG,DEDDh,cas14j,cas3,csa3	Orphan	GCTGCCGTTGACGTTGATCGTGCC	24	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas14j,cas3,csa3	NA,NA	NA|262aa|up_9|NZ_CP021109.1_4420893_4421679_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|292aa|up_8|NZ_CP021109.1_4421894_4422770_+	COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport and metabolism]	NA|405aa|up_7|NZ_CP021109.1_4422844_4424059_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|288aa|up_6|NZ_CP021109.1_4424182_4425046_+	cd06582, TM_PBP1_LivH_like, Transmembrane subunit (TM) of Escherichia coli LivH and related proteins	NA|340aa|up_5|NZ_CP021109.1_4425042_4426062_+	cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of Escherichia coli LivM and related proteins	NA|235aa|up_4|NZ_CP021109.1_4426072_4426777_+	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system	NA|410aa|up_3|NZ_CP021109.1_4426852_4428082_+	cd06338, PBP1_ABC_ligand_binding-like, type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions	NA|263aa|up_2|NZ_CP021109.1_4428137_4428926_+	cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter	NA|316aa|up_1|NZ_CP021109.1_4428918_4429866_+	COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport and metabolism]	NA|327aa|up_0|NZ_CP021109.1_4429883_4430864_+	COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport and metabolism]	NA|378aa|down_0|NZ_CP021109.1_4436696_4437830_+	cd19980, PBP1_ABC_ligand_binding-like, type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions	NA|292aa|down_1|NZ_CP021109.1_4437844_4438720_+	cd06582, TM_PBP1_LivH_like, Transmembrane subunit (TM) of Escherichia coli LivH and related proteins	NA|321aa|down_2|NZ_CP021109.1_4438719_4439682_+	cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of Escherichia coli LivM and related proteins	NA|253aa|down_3|NZ_CP021109.1_4439674_4440433_+	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system	NA|266aa|down_4|NZ_CP021109.1_4440429_4441227_+	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]	NA|251aa|down_5|NZ_CP021109.1_4441352_4442105_+	COG3473, COG3473, Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|274aa|down_6|NZ_CP021109.1_4442108_4442930_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|348aa|down_7|NZ_CP021109.1_4442920_4443964_+	COG2309, AmpS, Leucyl aminopeptidase (aminopeptidase T) [Amino acid transport and metabolism]	NA|217aa|down_8|NZ_CP021109.1_4443984_4444635_+	cd01015, CSHase, N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia	NA|407aa|down_9|NZ_CP021109.1_4444670_4445891_+	PRK08163, PRK08163, 3-hydroxybenzoate 6-monooxygenase
