The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP021109	Bordetella genomosp. 9 strain AU17164 chromosome, complete genome	4587366	1197799	1245301	4587366	tRNA,tail,terminase,head,portal,protease,capsid	uncultured_Mediterranean_phage(12.5%)	45	NA	NA
WP_086056484.1|1197799_1199116_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	48.7	1.6e-88
WP_086071768.1|1199212_1199533_-	hypothetical protein	NA	NA	NA	NA	NA
WP_086056486.1|1199963_1200206_+	hypothetical protein	NA	NA	NA	NA	NA
WP_086071769.1|1200246_1200516_+	hypothetical protein	NA	NA	NA	NA	NA
WP_086071770.1|1200535_1201414_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_086071771.1|1201524_1202244_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_086071772.1|1202382_1203357_-	isopenicillin N synthase family oxygenase	NA	NA	NA	NA	NA
WP_157664808.1|1203199_1204144_+	UTRA domain-containing protein	NA	NA	NA	NA	NA
WP_157664809.1|1204158_1205121_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_086056493.1|1205141_1206050_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_086071774.1|1206114_1206249_-	DUF2474 domain-containing protein	NA	NA	NA	NA	NA
WP_086071775.1|1206279_1207287_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_086071776.1|1207289_1208732_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_086056497.1|1208867_1209050_-	hypothetical protein	NA	NA	NA	NA	NA
WP_086071777.1|1209140_1210283_-	acetate/propionate family kinase	NA	NA	NA	NA	NA
WP_086071778.1|1210334_1212728_-	phosphoketolase family protein	NA	NA	NA	NA	NA
WP_086071779.1|1212947_1214135_+	2-methylaconitate cis-trans isomerase PrpF	NA	NA	NA	NA	NA
WP_086071780.1|1214125_1215913_-	response regulator	NA	Q8QKV7	Ectocarpus_siliculosus_virus	29.9	3.5e-30
WP_086056502.1|1215914_1216658_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_157664810.1|1217183_1217435_+	hypothetical protein	NA	NA	NA	NA	NA
WP_086071782.1|1217486_1218539_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_086056505.1|1218789_1219794_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_086071783.1|1219810_1220416_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_086056507.1|1220423_1221728_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_086071784.1|1221743_1222595_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_086056509.1|1222618_1223023_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_086056510.1|1223019_1223667_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_086071785.1|1223659_1225669_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_086071786.1|1225711_1226788_-	ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_086059274.1|1227032_1228367_+	MFS transporter	NA	NA	NA	NA	NA
WP_086071787.1|1228720_1230055_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_086071788.1|1230124_1233328_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_086059275.1|1233363_1234863_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_086071789.1|1235091_1236495_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_086056516.1|1236525_1236861_+	hypothetical protein	NA	NA	NA	NA	NA
WP_086056518.1|1237676_1237955_+	hypothetical protein	NA	NA	NA	NA	NA
WP_086056519.1|1238160_1238433_+	hypothetical protein	NA	NA	NA	NA	NA
WP_086071791.1|1238918_1239200_-|head,tail	phage gp6-like head-tail connector protein	head,tail	NA	NA	NA	NA
WP_086071792.1|1239336_1240842_-|terminase	terminase large subunit	terminase	Q9MCV7	Escherichia_phage	63.1	2.0e-183
WP_086071793.1|1240838_1241303_-	TerS protein	NA	A0A0F7L441	uncultured_marine_virus	40.9	2.1e-19
WP_157664917.1|1241351_1241753_-	HNH endonuclease	NA	NA	NA	NA	NA
WP_086071794.1|1241670_1242906_-|portal	phage portal protein	portal	A0A2K5B287	Erysipelothrix_phage	38.3	1.7e-63
WP_086071795.1|1242896_1243454_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	43.2	7.3e-27
WP_086071796.1|1243450_1244038_-|tail	tail assembly protein	tail	A4JX15	Burkholderia_virus	64.9	1.2e-59
WP_086071797.1|1244047_1245301_-|capsid	phage major capsid protein	capsid	A0A2I5ARA4	Synechococcus_phage	34.8	5.7e-43
>prophage 2
NZ_CP021109	Bordetella genomosp. 9 strain AU17164 chromosome, complete genome	4587366	1849681	1912380	4587366	tRNA,tail,terminase,transposase,head,portal,integrase,protease,capsid	Pseudomonas_phage(18.18%)	77	1866083:1866103	1907318:1907338
WP_086072090.1|1849681_1852543_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.4	1.6e-72
WP_086057035.1|1852532_1853501_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_086073567.1|1853568_1854237_+	phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_086059341.1|1854274_1855756_+	RsmB/NOP family class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA	NA
WP_157664824.1|1855727_1856180_-	hypothetical protein	NA	NA	NA	NA	NA
WP_086059342.1|1856428_1857637_+	acyl-CoA desaturase	NA	NA	NA	NA	NA
WP_086072092.1|1857633_1859922_+	AAA family ATPase	NA	A7KV33	Bacillus_phage	37.1	1.4e-111
WP_086072093.1|1859940_1861890_-	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	32.8	1.0e-67
WP_086059343.1|1861886_1862783_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_086072094.1|1862791_1863931_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_086057040.1|1863930_1864752_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_086072095.1|1864772_1865972_-	succinyldiaminopimelate transaminase	NA	NA	NA	NA	NA
1866083:1866103	attL	CGAGTCCCCTCCTTCGCACCA	NA	NA	NA	NA
WP_086072096.1|1866267_1867257_+|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	47.3	1.7e-79
WP_086073568.1|1867240_1867450_-	hypothetical protein	NA	NA	NA	NA	NA
WP_086072097.1|1867571_1867964_-	hypothetical protein	NA	NA	NA	NA	NA
WP_086072098.1|1867967_1868345_-	hypothetical protein	NA	Q6J1Q1	Burkholderia_virus	44.0	2.5e-10
WP_086072099.1|1868337_1868574_-	hypothetical protein	NA	NA	NA	NA	NA
WP_086072100.1|1868573_1868765_-	hypothetical protein	NA	NA	NA	NA	NA
WP_086072101.1|1868761_1869760_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157664825.1|1870431_1871001_-	HNH endonuclease	NA	K7PL52	Enterobacteria_phage	40.4	4.9e-26
WP_157664826.1|1870997_1871297_-	hypothetical protein	NA	NA	NA	NA	NA
WP_086072103.1|1871390_1871999_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157664827.1|1872005_1872149_-	hypothetical protein	NA	NA	NA	NA	NA
WP_086072104.1|1872159_1872663_-	siphovirus Gp157 family protein	NA	A6M981	Geobacillus_virus	40.9	5.8e-23
WP_086072105.1|1872675_1873293_-	hypothetical protein	NA	NA	NA	NA	NA
WP_086072106.1|1873295_1873949_-	AAA family ATPase	NA	A0A2D1GLT5	Escherichia_phage	54.2	1.8e-64
WP_086072107.1|1874176_1874449_-	hypothetical protein	NA	NA	NA	NA	NA
WP_086056564.1|1874596_1874869_-	hypothetical protein	NA	NA	NA	NA	NA
WP_086072108.1|1874865_1875078_-	hypothetical protein	NA	NA	NA	NA	NA
WP_086072109.1|1875091_1875415_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157664828.1|1875439_1876156_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157664829.1|1876226_1876490_-	hypothetical protein	NA	NA	NA	NA	NA
WP_086072111.1|1876734_1877001_+	hypothetical protein	NA	NA	NA	NA	NA
WP_086072112.1|1877493_1877733_+	Arc family DNA-binding protein	NA	NA	NA	NA	NA
WP_086072114.1|1878230_1878704_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_157664830.1|1879093_1879738_-	hypothetical protein	NA	R9TNM0	Vibrio_phage	32.5	4.1e-05
WP_086072116.1|1879906_1880131_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_086072117.1|1880223_1880661_+	hypothetical protein	NA	Q3HQZ3	Burkholderia_phage	46.6	1.2e-27
WP_086072118.1|1880660_1881134_+	hypothetical protein	NA	NA	NA	NA	NA
WP_086072119.1|1881130_1881490_+	recombinase	NA	NA	NA	NA	NA
WP_086073569.1|1881501_1882254_+	helix-turn-helix domain-containing protein	NA	A0A0U4IBP5	Pseudomonas_phage	50.5	6.0e-16
WP_086073570.1|1882240_1882996_+	DNA replication protein DnaC	NA	A0A059WFK9	Vibrio_phage	46.9	4.3e-54
WP_157664831.1|1883043_1883343_+	hypothetical protein	NA	NA	NA	NA	NA
WP_086073571.1|1883360_1883801_+	hypothetical protein	NA	NA	NA	NA	NA
WP_086072121.1|1883954_1884476_+	hypothetical protein	NA	NA	NA	NA	NA
WP_086072122.1|1885226_1885406_+	hypothetical protein	NA	NA	NA	NA	NA
WP_086072123.1|1885796_1886243_+	hypothetical protein	NA	A0A286S1P9	Klebsiella_phage	60.7	3.2e-41
WP_086072124.1|1886221_1887748_+|terminase	terminase	terminase	B5WZR8	Pseudomonas_phage	77.5	2.1e-225
WP_086072125.1|1887744_1888980_+|portal	phage portal protein	portal	A0A2H4PI10	Pseudomonas_phage	62.1	9.2e-147
WP_086072126.1|1888985_1889843_+|protease	Clp protease ClpP	protease	K7PH05	Enterobacteria_phage	62.6	5.3e-85
WP_086072127.1|1889849_1891055_+|capsid	phage major capsid protein	capsid	A0A2H4PI18	Pseudomonas_phage	67.9	2.7e-143
WP_086072129.1|1891268_1891793_+	hypothetical protein	NA	H2BDB2	Pseudomonas_virus	54.3	5.3e-51
WP_086072130.1|1891789_1892101_+|head,tail	phage gp6-like head-tail connector protein	head,tail	H2BDB3	Pseudomonas_virus	61.3	4.2e-24
WP_086072131.1|1892100_1892457_+|head,tail	head-tail adaptor protein	head,tail	Q9XJT0	Pseudomonas_phage	55.0	1.1e-31
WP_086072132.1|1892453_1893017_+	hypothetical protein	NA	NA	NA	NA	NA
WP_086073572.1|1893025_1893388_+	DUF3168 domain-containing protein	NA	K7PHI9	Enterobacteria_phage	33.1	6.7e-13
WP_086072133.1|1893447_1893915_+	hypothetical protein	NA	Q9MCA5	Pseudomonas_phage	37.9	1.1e-18
WP_086072134.1|1893918_1894296_+	hypothetical protein	NA	NA	NA	NA	NA
WP_086072135.1|1894313_1894523_+	hypothetical protein	NA	NA	NA	NA	NA
WP_086072136.1|1894532_1896680_+|tail	phage tail tape measure protein	tail	B7SYE7	Stenotrophomonas_phage	43.1	1.9e-38
WP_086056599.1|1896679_1897030_+	hypothetical protein	NA	NA	NA	NA	NA
WP_086072137.1|1897089_1898223_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	Q9G0F2	Phage_Gifsy-1	59.4	2.1e-121
WP_086072138.1|1898348_1898825_+	DUF1833 domain-containing protein	NA	I7GYA2	Xanthomonas_virus	30.1	3.1e-10
WP_086072139.1|1898901_1899501_+	hypothetical protein	NA	NA	NA	NA	NA
WP_086073573.1|1899952_1903855_+	hypothetical protein	NA	Q52PQ3	Xanthomonas_phage	28.5	2.2e-48
WP_086072141.1|1904263_1904500_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157664832.1|1904855_1905428_+	DUF4376 domain-containing protein	NA	NA	NA	NA	NA
WP_086072143.1|1905470_1905737_+	hypothetical protein	NA	A5A3W1	Burkholderia_phage	42.0	1.5e-09
WP_086072144.1|1905733_1905994_+	hypothetical protein	NA	NA	NA	NA	NA
WP_086072145.1|1905980_1906406_+	glycoside hydrolase family protein	NA	A0A1J0GVQ7	Pseudoalteromonas_phage	54.5	4.9e-31
WP_086072146.1|1906661_1906916_+	hypothetical protein	NA	I6NLI6	Burkholderia_phage	53.2	1.7e-15
WP_157664833.1|1907516_1907678_+	hypothetical protein	NA	NA	NA	NA	NA
1907318:1907338	attR	CGAGTCCCCTCCTTCGCACCA	NA	NA	NA	NA
WP_086057113.1|1907866_1908073_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	65.2	9.6e-17
WP_086057114.1|1908134_1908662_-	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.1	1.7e-20
WP_086057116.1|1909017_1910328_+	trigger factor	NA	NA	NA	NA	NA
WP_086057117.1|1910327_1910984_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	56.8	3.4e-55
WP_086057118.1|1911081_1912380_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	55.2	4.4e-131
