assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002119685.1_ASM211968v1	NZ_CP021108	Bordetella genomosp. 8 strain AU19157 chromosome, complete genome	1	658990-659178	1	CRISPRCasFinder	no		csa3,cas3,WYL,DinG,DEDDh	Orphan	GGTCGCCGGGACGCTGGCGAACTC	24	0	0	NA	NA	NA	3	3	Orphan	csa3,cas3,WYL,DinG,DEDDh	NA,NA	NA|193aa|up_9|NZ_CP021108.1_648012_648591_-	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair]	NA|438aa|up_8|NZ_CP021108.1_648589_649903_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|592aa|up_7|NZ_CP021108.1_649946_651722_-	cd07756, CYTH-like_Pase_CHAD, Uncharacterized subgroup of the CYTH-like superfamily having an associated CHAD domain	NA|393aa|up_6|NZ_CP021108.1_651896_653075_+	PRK14019, PRK14019, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA|178aa|up_5|NZ_CP021108.1_653166_653700_+	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional	NA|163aa|up_4|NZ_CP021108.1_653683_654172_+	PRK00202, nusB, transcription antitermination factor NusB	NA|322aa|up_3|NZ_CP021108.1_654221_655187_+	PRK05731, PRK05731, thiamine monophosphate kinase; Provisional	NA|169aa|up_2|NZ_CP021108.1_655219_655726_+	pfam04608, PgpA, Phosphatidylglycerophosphatase A	NA|180aa|up_1|NZ_CP021108.1_655722_656262_+	pfam02464, CinA, Competence-damaged protein	NA|273aa|up_0|NZ_CP021108.1_656364_657183_-	PRK00125, pyrF, orotidine 5'-phosphate decarboxylase; Reviewed	NA|132aa|down_0|NZ_CP021108.1_660862_661258_-	cd14264, DAGK_IM, Integral membrane diacylglycerol kinase	NA|250aa|down_1|NZ_CP021108.1_661382_662132_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|343aa|down_2|NZ_CP021108.1_662240_663269_+	cd08232, idonate-5-DH, L-idonate 5-dehydrogenase	NA|325aa|down_3|NZ_CP021108.1_663337_664312_+	cd13672, PBP2_TRAP_Siap, Substrate-binding domain of a sialic acid binding Tripartite ATP-independent  Periplasmic transport system (SiaP); the type 2 periplasmic-binding protein fold	NA|204aa|down_4|NZ_CP021108.1_664326_664938_+	COG3090, DctM, TRAP-type C4-dicarboxylate transport system, small permease component [Carbohydrate transport and metabolism]	NA|469aa|down_5|NZ_CP021108.1_664966_666373_+	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]	NA|252aa|down_6|NZ_CP021108.1_666398_667154_+	cd05368, DHRS6_like_SDR_c, human DHRS6-like, classical (c) SDRs	NA|288aa|down_7|NZ_CP021108.1_667383_668247_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|512aa|down_8|NZ_CP021108.1_668357_669893_+	pfam04295, GD_AH_C, D-galactarate dehydratase / Altronate hydrolase, C-terminus	NA|350aa|down_9|NZ_CP021108.1_669915_670965_+	pfam02615, Ldh_2, Malate/L-lactate dehydrogenase
GCF_002119685.1_ASM211968v1	NZ_CP021108	Bordetella genomosp. 8 strain AU19157 chromosome, complete genome	2	1973472-1973584	2	CRISPRCasFinder	no		csa3,cas3,WYL,DinG,DEDDh	Orphan	CCGGGACGCGCGGATCCGGCTCCGCCGGTCC	31	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DinG,DEDDh	NA|373aa|up_8|NZ_CP021108.1_1957490_1958609_-,NA	NA|182aa|up_9|NZ_CP021108.1_1956803_1957349_-	PRK12606, PRK12606, GTP cyclohydrolase I; Reviewed	NA|373aa|up_8|NZ_CP021108.1_1957490_1958609_-	NA	NA|306aa|up_7|NZ_CP021108.1_1958706_1959624_-	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|528aa|up_6|NZ_CP021108.1_1959731_1961315_+	PRK09255, PRK09255, malate synthase; Validated	NA|138aa|up_5|NZ_CP021108.1_1961326_1961740_-	pfam06094, GGACT, Gamma-glutamyl cyclotransferase, AIG2-like	NA|864aa|up_4|NZ_CP021108.1_1961871_1964463_+	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB	NA|513aa|up_3|NZ_CP021108.1_1964510_1966049_-	PRK07586, PRK07586, acetolactate synthase large subunit	NA|235aa|up_2|NZ_CP021108.1_1966058_1966763_-	COG1636, COG1636, Uncharacterized protein conserved in bacteria [Function unknown]	NA|977aa|up_1|NZ_CP021108.1_1966787_1969718_-	PRK11072, PRK11072, bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase	NA|1250aa|up_0|NZ_CP021108.1_1969720_1973470_+	TIGR02099, probable_transmembrane_protein, TIGR02099 family protein	NA|419aa|down_0|NZ_CP021108.1_1973630_1974887_-	PRK09376, rho, transcription termination factor Rho; Provisional	NA|109aa|down_1|NZ_CP021108.1_1974966_1975293_-	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|671aa|down_2|NZ_CP021108.1_1975562_1977575_+	PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed	NA|770aa|down_3|NZ_CP021108.1_1977627_1979937_+	PRK05561, PRK05561, DNA topoisomerase 4 subunit A	NA|188aa|down_4|NZ_CP021108.1_1980167_1980731_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|183aa|down_5|NZ_CP021108.1_1980727_1981276_+	TIGR02406, L-24-diaminobutyric_acid_acetyltransferase, diaminobutyrate acetyltransferase	NA|436aa|down_6|NZ_CP021108.1_1981377_1982685_+	PRK09264, PRK09264, diaminobutyrate--2-oxoglutarate transaminase	NA|133aa|down_7|NZ_CP021108.1_1982681_1983080_+	PRK13290, ectC, L-ectoine synthase; Reviewed	NA|308aa|down_8|NZ_CP021108.1_1983120_1984044_+	TIGR02408, putative_L-proline_4-hydroxylase, ectoine hydroxylase	NA|293aa|down_9|NZ_CP021108.1_1984100_1984979_+	COG3217, COG3217, Uncharacterized Fe-S protein [General function prediction only]
GCF_002119685.1_ASM211968v1	NZ_CP021108	Bordetella genomosp. 8 strain AU19157 chromosome, complete genome	3	2285206-2285307	3	CRISPRCasFinder	no		csa3,cas3,WYL,DinG,DEDDh	Orphan	ATAAATAAGAGTTCGCATTCCGAA	24	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DinG,DEDDh	NA|212aa|up_6|NZ_CP021108.1_2277852_2278488_-,NA	NA|493aa|up_9|NZ_CP021108.1_2275087_2276566_+	COG3391, COG3391, Uncharacterized conserved protein [Function unknown]	NA|121aa|up_8|NZ_CP021108.1_2276576_2276939_+	COG2372, CopC, Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]	NA|292aa|up_7|NZ_CP021108.1_2276943_2277819_+	COG1276, PcoD, Putative copper export protein [Inorganic ion transport and metabolism]	NA|212aa|up_6|NZ_CP021108.1_2277852_2278488_-	NA	NA|312aa|up_5|NZ_CP021108.1_2278582_2279518_-	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|249aa|up_4|NZ_CP021108.1_2279644_2280391_-	PRK06500, PRK06500, SDR family oxidoreductase	NA|328aa|up_3|NZ_CP021108.1_2280527_2281511_-	cd19076, AKR_AKR13A_13D, AKR13A and AKR13D families of aldo-keto reductase (AKR)	NA|500aa|up_2|NZ_CP021108.1_2281584_2283084_-	cd07114, ALDH_DhaS, Uncharacterized Candidatus pelagibacter aldehyde dehydrogenase, DhaS-like	NA|331aa|up_1|NZ_CP021108.1_2283146_2284139_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|247aa|up_0|NZ_CP021108.1_2284382_2285123_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|277aa|down_0|NZ_CP021108.1_2285337_2286168_+	TIGR02431, p-hydroxybenzoate_hydroxylase_transcriptional, beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family	NA|314aa|down_1|NZ_CP021108.1_2286230_2287172_+	cd00408, DHDPS-like, Dihydrodipicolinate synthase family	NA|230aa|down_2|NZ_CP021108.1_2287175_2287865_+	cd05233, SDR_c, classical (c) SDRs	NA|277aa|down_3|NZ_CP021108.1_2287933_2288764_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|288aa|down_4|NZ_CP021108.1_2288756_2289620_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|358aa|down_5|NZ_CP021108.1_2289653_2290727_+	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]	NA|260aa|down_6|NZ_CP021108.1_2290806_2291586_+	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG	NA|203aa|down_7|NZ_CP021108.1_2291724_2292333_+	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain	NA|313aa|down_8|NZ_CP021108.1_2292335_2293274_-	cd06910, M14_ASTE_ASPA-like, Peptidase M14 Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA)-like; uncharacterized subgroup	NA|341aa|down_9|NZ_CP021108.1_2293326_2294349_-	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold
GCF_002119685.1_ASM211968v1	NZ_CP021108	Bordetella genomosp. 8 strain AU19157 chromosome, complete genome	4	2650780-2650883	4	CRISPRCasFinder	no		csa3,cas3,WYL,DinG,DEDDh	Orphan	CTCCGCCGGTCCTCCAGCGTCGGC	24	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DinG,DEDDh	NA,NA	NA|94aa|up_9|NZ_CP021108.1_2641909_2642191_-	pfam05400, FliT, Flagellar protein FliT	NA|143aa|up_8|NZ_CP021108.1_2642304_2642733_-	PRK05685, fliS, flagellar export chaperone FliS	NA|470aa|up_7|NZ_CP021108.1_2642737_2644147_-	PRK08032, fliD, flagellar capping protein; Reviewed	NA|128aa|up_6|NZ_CP021108.1_2644269_2644653_-	pfam03646, FlaG, FlaG protein	NA|437aa|up_5|NZ_CP021108.1_2644786_2646097_+	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism]	NA|333aa|up_4|NZ_CP021108.1_2646145_2647144_+	pfam05036, SPOR, Sporulation related domain	NA|163aa|up_3|NZ_CP021108.1_2647140_2647629_+	pfam02674, Colicin_V, Colicin V production protein	NA|507aa|up_2|NZ_CP021108.1_2647705_2649226_+	PRK09246, PRK09246, amidophosphoribosyltransferase; Provisional	NA|158aa|up_1|NZ_CP021108.1_2649358_2649832_-	pfam02600, DsbB, Disulfide bond formation protein DsbB	NA|239aa|up_0|NZ_CP021108.1_2649875_2650592_-	PRK10995, PRK10995, MarC family NAAT transporter	NA|881aa|down_0|NZ_CP021108.1_2650923_2653566_-	PRK03059, PRK03059, PII uridylyl-transferase; Provisional	NA|274aa|down_1|NZ_CP021108.1_2653614_2654436_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|250aa|down_2|NZ_CP021108.1_2654691_2655441_+	PRK05299, rpsB, 30S ribosomal protein S2; Provisional	NA|293aa|down_3|NZ_CP021108.1_2655553_2656432_+	PRK09377, tsf, elongation factor Ts; Provisional	NA|239aa|down_4|NZ_CP021108.1_2656548_2657265_+	cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)	NA|187aa|down_5|NZ_CP021108.1_2657279_2657840_+	PRK00083, frr, ribosome recycling factor; Reviewed	NA|255aa|down_6|NZ_CP021108.1_2657869_2658634_+	PRK14836, PRK14836, undecaprenyl pyrophosphate synthase; Provisional	NA|288aa|down_7|NZ_CP021108.1_2658835_2659699_+	pfam01148, CTP_transf_1, Cytidylyltransferase family	NA|415aa|down_8|NZ_CP021108.1_2659695_2660940_+	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional	NA|445aa|down_9|NZ_CP021108.1_2661027_2662362_+	PRK10779, PRK10779, sigma E protease regulator RseP
GCF_002119685.1_ASM211968v1	NZ_CP021108	Bordetella genomosp. 8 strain AU19157 chromosome, complete genome	5	6075123-6075214	5	CRISPRCasFinder	no		csa3,cas3,WYL,DinG,DEDDh	Orphan	GCGTCGCCCCCTGGAGGGGGAAGCGCG	27	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DinG,DEDDh	NA|76aa|up_9|NZ_CP021108.1_6064294_6064522_+,NA	NA|76aa|up_9|NZ_CP021108.1_6064294_6064522_+	NA	NA|431aa|up_8|NZ_CP021108.1_6064518_6065811_+	cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase	NA|447aa|up_7|NZ_CP021108.1_6065892_6067233_-	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB	NA|668aa|up_6|NZ_CP021108.1_6067243_6069247_-	pfam05140, ResB, ResB-like family	NA|227aa|up_5|NZ_CP021108.1_6069503_6070184_-	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|208aa|up_4|NZ_CP021108.1_6070417_6071041_+	PRK00454, engB, GTP-binding protein YsxC; Reviewed	NA|338aa|up_3|NZ_CP021108.1_6071037_6072051_+	PRK09283, PRK09283, porphobilinogen synthase	NA|684aa|up_2|NZ_CP021108.1_6072087_6074139_-	PRK00293, dipZ, thiol:disulfide interchange protein precursor; Provisional	NA|116aa|up_1|NZ_CP021108.1_6074150_6074498_-	pfam03091, CutA1, CutA1 divalent ion tolerance protein	NA|131aa|up_0|NZ_CP021108.1_6074569_6074962_-	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|329aa|down_0|NZ_CP021108.1_6075236_6076223_-	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|208aa|down_1|NZ_CP021108.1_6076377_6077001_-	PRK05327, rpsD, 30S ribosomal protein S4; Validated	NA|134aa|down_2|NZ_CP021108.1_6077012_6077414_-	PRK05309, PRK05309, 30S ribosomal protein S11; Validated	NA|122aa|down_3|NZ_CP021108.1_6077429_6077795_-	PRK05179, rpsM, 30S ribosomal protein S13; Validated	NA|38aa|down_4|NZ_CP021108.1_6077834_6077948_-	PRK00465, rpmJ, 50S ribosomal protein L36; Reviewed	NA|73aa|down_5|NZ_CP021108.1_6077982_6078201_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|444aa|down_6|NZ_CP021108.1_6078209_6079541_-	PRK09204, secY, preprotein translocase subunit SecY; Reviewed	NA|147aa|down_7|NZ_CP021108.1_6079551_6079992_-	PRK05592, rplO, 50S ribosomal protein L15; Reviewed	NA|62aa|down_8|NZ_CP021108.1_6080001_6080187_-	PRK05611, rpmD, 50S ribosomal protein L30; Reviewed	NA|174aa|down_9|NZ_CP021108.1_6080190_6080712_-	PRK00550, rpsE, 30S ribosomal protein S5; Validated
