assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002119665.1_ASM211966v1	NZ_CP021111	Bordetella genomosp. 13 strain AU7206 chromosome, complete genome	1	1834944-1835056	1	CRISPRCasFinder	no		WYL,DinG,csa3,DEDDh,PD-DExK,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	Orphan	CAGCAAGCCGAAGGCGCAGCGCGGGGGCATCATTT	35	0	0	NA	NA	NA	1	1	Orphan	WYL,DinG,csa3,DEDDh,PD-DExK,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	NA,NA|63aa|down_3|NZ_CP021111.1_1841639_1841828_-,NA|148aa|down_4|NZ_CP021111.1_1842135_1842579_+	NA|1056aa|up_9|NZ_CP021111.1_1821282_1824450_-	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family	NA|402aa|up_8|NZ_CP021111.1_1824462_1825668_-	PRK15030, PRK15030, multidrug efflux RND transporter periplasmic adaptor subunit AcrA	NA|244aa|up_7|NZ_CP021111.1_1826037_1826769_-	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|207aa|up_6|NZ_CP021111.1_1826884_1827505_+	COG3161, UbiC, 4-hydroxybenzoate synthetase (chorismate lyase) [Coenzyme metabolism]	NA|624aa|up_5|NZ_CP021111.1_1827630_1829502_+	TIGR04479, bcpD_PhpK_rSAM, radical SAM P-methyltransferase, PhpK family	NA|178aa|up_4|NZ_CP021111.1_1829532_1830066_-	pfam07152, YaeQ, YaeQ protein	NA|235aa|up_3|NZ_CP021111.1_1830308_1831013_+	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|616aa|up_2|NZ_CP021111.1_1831044_1832892_-	PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional	NA|298aa|up_1|NZ_CP021111.1_1832906_1833800_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|315aa|up_0|NZ_CP021111.1_1833802_1834747_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|543aa|down_0|NZ_CP021111.1_1836663_1838292_-	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism]	NA|300aa|down_1|NZ_CP021111.1_1838392_1839292_+	cd08427, PBP2_LTTR_like_2, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|728aa|down_2|NZ_CP021111.1_1839421_1841605_-	TIGR03396, PC_PLC, phospholipase C, phosphocholine-specific, Pseudomonas-type	NA|63aa|down_3|NZ_CP021111.1_1841639_1841828_-	NA	NA|148aa|down_4|NZ_CP021111.1_1842135_1842579_+	NA	NA|154aa|down_5|NZ_CP021111.1_1842664_1843126_+	TIGR01710, Type_II_secretion_system_protein_G, type II secretion system protein G	NA|164aa|down_6|NZ_CP021111.1_1843097_1843589_+	TIGR01708, Type_II_secretion_system_protein_H, type II secretion system protein H	NA|129aa|down_7|NZ_CP021111.1_1843575_1843962_+	pfam02501, T2SSI, Type II secretion system (T2SS), protein I	NA|204aa|down_8|NZ_CP021111.1_1843958_1844570_+	COG4795, PulJ, Type II secretory pathway, component PulJ [Intracellular trafficking and secretion]	NA|325aa|down_9|NZ_CP021111.1_1844566_1845541_+	pfam03934, T2SSK, Type II secretion system (T2SS), protein K
GCF_002119665.1_ASM211966v1	NZ_CP021111	Bordetella genomosp. 13 strain AU7206 chromosome, complete genome	2	3205898-3205993	2	CRISPRCasFinder	no		WYL,DinG,csa3,DEDDh,PD-DExK,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	Orphan	TTGCAACCGCGATTGCCATCGCCAC	25	0	0	NA	NA	NA	1	1	Orphan	WYL,DinG,csa3,DEDDh,PD-DExK,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	NA|151aa|up_1|NZ_CP021111.1_3203087_3203540_-,NA|64aa|down_2|NZ_CP021111.1_3210365_3210557_+,NA|82aa|down_5|NZ_CP021111.1_3213572_3213818_-,NA|72aa|down_6|NZ_CP021111.1_3213950_3214166_-,NA|71aa|down_8|NZ_CP021111.1_3215539_3215752_-,NA|79aa|down_9|NZ_CP021111.1_3215949_3216186_-	NA|511aa|up_9|NZ_CP021111.1_3192576_3194109_+	cd03468, PolY_like, DNA Polymerase Y-family	NA|1059aa|up_8|NZ_CP021111.1_3194118_3197295_+	PRK05672, dnaE2, error-prone DNA polymerase; Validated	NA|415aa|up_7|NZ_CP021111.1_3197305_3198550_-	PRK00711, PRK00711, D-amino acid dehydrogenase	NA|146aa|up_6|NZ_CP021111.1_3198734_3199172_-	PRK11014, PRK11014, HTH-type transcriptional repressor NsrR	NA|406aa|up_5|NZ_CP021111.1_3199244_3200462_-	PRK13289, PRK13289, NO-inducible flavohemoprotein	NA|154aa|up_4|NZ_CP021111.1_3200734_3201196_+	pfam09424, YqeY, Yqey-like protein	NA|392aa|up_3|NZ_CP021111.1_3201390_3202566_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|137aa|up_2|NZ_CP021111.1_3202655_3203066_+	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|151aa|up_1|NZ_CP021111.1_3203087_3203540_-	NA	NA|638aa|up_0|NZ_CP021111.1_3203688_3205602_+	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|884aa|down_0|NZ_CP021111.1_3206345_3208997_+	COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane]	NA|391aa|down_1|NZ_CP021111.1_3209196_3210369_+	pfam03929, PepSY_TM, PepSY-associated TM region	NA|64aa|down_2|NZ_CP021111.1_3210365_3210557_+	NA	NA|275aa|down_3|NZ_CP021111.1_3210701_3211526_-	cd19131, AKR_AKR5C2, Escherichia coli 2,5-diketo-D-gluconic acid reductase A (DkgA/YqhE) and similar proteins	NA|587aa|down_4|NZ_CP021111.1_3211787_3213548_+	COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]	NA|82aa|down_5|NZ_CP021111.1_3213572_3213818_-	NA	NA|72aa|down_6|NZ_CP021111.1_3213950_3214166_-	NA	NA|379aa|down_7|NZ_CP021111.1_3214264_3215401_-	cd00249, AGE, AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid	NA|71aa|down_8|NZ_CP021111.1_3215539_3215752_-	NA	NA|79aa|down_9|NZ_CP021111.1_3215949_3216186_-	NA
GCF_002119665.1_ASM211966v1	NZ_CP021111	Bordetella genomosp. 13 strain AU7206 chromosome, complete genome	3	4794621-4796541	3,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	WYL,DinG,csa3,DEDDh,PD-DExK,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	Type I-E	CGGTTCATCCCCGCATGCGCGGGGAACAC,CGGTTCATCCCCGCATGCGCGGGGAACAC,CGGTTCATCCCCGCATGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	31,31,30	31	TypeI-E	WYL,DinG,csa3,DEDDh,PD-DExK,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	NA,NA	NA|333aa|up_9|NZ_CP021111.1_4784990_4785989_-	smart00978, Tim44, Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane	NA|259aa|up_8|NZ_CP021111.1_4786151_4786928_-	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA|233aa|up_7|NZ_CP021111.1_4787071_4787770_+	TIGR02154, PhoB, phosphate regulon transcriptional regulatory protein PhoB	NA|437aa|up_6|NZ_CP021111.1_4787776_4789087_+	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR	NA|399aa|up_5|NZ_CP021111.1_4789264_4790461_+	PRK11790, PRK11790, phosphoglycerate dehydrogenase	NA|287aa|up_4|NZ_CP021111.1_4790536_4791397_-	cd08427, PBP2_LTTR_like_2, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|144aa|up_3|NZ_CP021111.1_4791513_4791945_+	cd08357, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) familyprotein, glyoxalase I, and type I ring-cleaving dioxygenases	NA|255aa|up_2|NZ_CP021111.1_4792032_4792797_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|339aa|up_1|NZ_CP021111.1_4792814_4793831_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|253aa|up_0|NZ_CP021111.1_4793842_4794601_+	PRK05406, PRK05406, 5-oxoprolinase subunit PxpA	NA|100aa|down_0|NZ_CP021111.1_4797374_4797674_+	COG3077, RelB, DNA-damage-inducible protein J [DNA replication, recombination, and repair]	NA|95aa|down_1|NZ_CP021111.1_4797657_4797942_+	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE	cas2|102aa|down_2|NZ_CP021111.1_4798575_4798881_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|296aa|down_3|NZ_CP021111.1_4798880_4799768_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|204aa|down_4|NZ_CP021111.1_4799803_4800415_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|226aa|down_5|NZ_CP021111.1_4800389_4801067_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|378aa|down_6|NZ_CP021111.1_4801068_4802202_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|181aa|down_7|NZ_CP021111.1_4802217_4802760_-	PRK13921, PRK13921, CRISPR-associated Cse2 family protein; Provisional	cas8e|516aa|down_8|NZ_CP021111.1_4802761_4804309_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|928aa|down_9|NZ_CP021111.1_4804283_4807067_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3
GCF_002119665.1_ASM211966v1	NZ_CP021111	Bordetella genomosp. 13 strain AU7206 chromosome, complete genome	4	4807466-4808589	2,2,4	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	WYL,DinG,csa3,DEDDh,PD-DExK,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	Type I-E	CATCCCCGCATNCGCGGGGAACACN,CGGTTCATCCCCGCATGCGCGGGGAACAC,CGGTTCATCCCCGCATGCGCGGGGAACAC	25,29,29	0	0	NA	NA	I-E:I-E:I-E	18,17,17	18	TypeI-E	WYL,DinG,csa3,DEDDh,PD-DExK,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	NA,NA	NA|100aa|up_9|NZ_CP021111.1_4797374_4797674_+	COG3077, RelB, DNA-damage-inducible protein J [DNA replication, recombination, and repair]	NA|95aa|up_8|NZ_CP021111.1_4797657_4797942_+	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE	cas2|102aa|up_7|NZ_CP021111.1_4798575_4798881_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|296aa|up_6|NZ_CP021111.1_4798880_4799768_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|204aa|up_5|NZ_CP021111.1_4799803_4800415_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|226aa|up_4|NZ_CP021111.1_4800389_4801067_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|378aa|up_3|NZ_CP021111.1_4801068_4802202_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|181aa|up_2|NZ_CP021111.1_4802217_4802760_-	PRK13921, PRK13921, CRISPR-associated Cse2 family protein; Provisional	cas8e|516aa|up_1|NZ_CP021111.1_4802761_4804309_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|928aa|up_0|NZ_CP021111.1_4804283_4807067_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|739aa|down_0|NZ_CP021111.1_4808748_4810965_-	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]	NA|332aa|down_1|NZ_CP021111.1_4810976_4811972_-	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]	NA|167aa|down_2|NZ_CP021111.1_4811976_4812477_-	PRK11433, PRK11433, aldehyde oxidoreductase 2Fe-2S subunit; Provisional	NA|404aa|down_3|NZ_CP021111.1_4812667_4813879_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|316aa|down_4|NZ_CP021111.1_4814032_4814980_+	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|335aa|down_5|NZ_CP021111.1_4815004_4816009_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|327aa|down_6|NZ_CP021111.1_4815998_4816979_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|118aa|down_7|NZ_CP021111.1_4817196_4817550_-	TIGR02847, Cytochrome_bo3_ubiquinol_oxidase_subunit_4, cytochrome o ubiquinol oxidase subunit IV	NA|209aa|down_8|NZ_CP021111.1_4817549_4818176_-	TIGR02842, Cytochrome_bo3_ubiquinol_oxidase_subunit_3, cytochrome o ubiquinol oxidase, subunit III	NA|661aa|down_9|NZ_CP021111.1_4818179_4820162_-	TIGR02843, Cytochrome_bo3_ubiquinol_oxidase_subunit_1, cytochrome o ubiquinol oxidase, subunit I
