The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP019948	Methylocystis bryophila strain S285 chromosome, complete genome	4532950	2525116	2532488	4532950		Enterobacteria_phage(66.67%)	6	NA	NA
WP_085773680.1|2525116_2526769_-	energy-dependent translational throttle protein EttA	NA	A0A2K9L0W2	Tupanvirus	28.4	5.2e-44
WP_085771777.1|2527445_2528495_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.2	7.7e-102
WP_085771778.1|2528645_2529200_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	45.6	5.2e-33
WP_085771779.1|2529205_2530087_+	dTDP-4-dehydrorhamnose reductase	NA	I7HXC9	Enterobacteria_phage	38.5	3.7e-33
WP_085771780.1|2530107_2530980_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	57.6	1.2e-95
WP_085771781.1|2531039_2532488_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	M4QSA2	Synechococcus_phage	37.7	5.2e-16
>prophage 2
NZ_CP019948	Methylocystis bryophila strain S285 chromosome, complete genome	4532950	4497966	4507614	4532950		Yellowstone_lake_phycodnavirus(42.86%)	9	NA	NA
WP_085773895.1|4497966_4499556_-	Na+/H+ antiporter	NA	A0A2H4J178	uncultured_Caudovirales_phage	25.6	2.7e-05
WP_085773369.1|4499695_4500394_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_085773370.1|4500406_4501897_-	adenylyltransferase/cytidyltransferase family protein	NA	A0A0F7LBI5	uncultured_marine_virus	32.6	4.9e-09
WP_085773371.1|4502244_4503183_+	SDR family oxidoreductase	NA	M1NML0	Moumouvirus	24.9	3.6e-10
WP_085773372.1|4503179_4503770_+	SIS domain-containing protein	NA	NA	NA	NA	NA
WP_085773373.1|4503775_4504774_+	NAD-dependent epimerase/dehydratase family protein	NA	A0A0N7KVW3	Yellowstone_lake_phycodnavirus	32.3	2.9e-34
WP_085773374.1|4504805_4505651_+	transketolase	NA	A0A0P0YMZ3	Yellowstone_lake_phycodnavirus	35.5	4.1e-13
WP_085773375.1|4505647_4506577_+	transketolase	NA	A0A0P0YNE1	Yellowstone_lake_phycodnavirus	34.8	3.6e-18
WP_085773376.1|4506573_4507614_+	zinc-binding dehydrogenase	NA	A0A0K0KVL7	Prochlorococcus_phage	36.7	4.2e-52
>prophage 1
NZ_CP019949	Methylocystis bryophila strain S285 plasmid p1, complete sequence	175021	0	35883	175021		Tupanvirus(83.33%)	9	NA	NA
WP_158658919.1|507_9705_-	amino acid adenylation domain-containing protein	NA	A0A2K9KZV5	Tupanvirus	27.3	1.0e-149
WP_158658920.1|9683_11744_-	amino acid adenylation domain-containing protein	NA	A0A2K9L3I8	Tupanvirus	31.7	1.2e-71
WP_085773898.1|11562_12183_-	hypothetical protein	NA	NA	NA	NA	NA
WP_158658921.1|12163_16366_-	amino acid adenylation domain-containing protein	NA	A0A2K9L3I8	Tupanvirus	26.5	5.3e-101
WP_158658922.1|16368_22797_-	amino acid adenylation domain-containing protein	NA	A0A2K9L3I8	Tupanvirus	25.0	2.0e-123
WP_085773901.1|22793_23855_-	taurine catabolism dioxygenase TauD	NA	NA	NA	NA	NA
WP_158658923.1|23881_33913_-	amino acid adenylation domain-containing protein	NA	A0A2K9KZV5	Tupanvirus	25.7	1.1e-141
WP_085773903.1|34181_34406_-	MbtH family NRPS accessory protein	NA	NA	NA	NA	NA
WP_085773904.1|34449_35883_-	diaminobutyrate--2-oxoglutarate transaminase family protein	NA	A0A1V0SKB7	Klosneuvirus	23.1	2.4e-21
>prophage 2
NZ_CP019949	Methylocystis bryophila strain S285 plasmid p1, complete sequence	175021	40938	48235	175021		Bacillus_phage(66.67%)	3	NA	NA
WP_085773908.1|40938_42351_-	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	25.2	1.3e-14
WP_085773909.1|42347_43034_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	27.3	2.6e-18
WP_102938231.1|43351_48235_+	TonB-dependent siderophore receptor	NA	O11861	Bartonella_henselae_phage	29.3	7.9e-08
>prophage 3
NZ_CP019949	Methylocystis bryophila strain S285 plasmid p1, complete sequence	175021	51658	52414	175021		Planktothrix_phage(100.0%)	1	NA	NA
WP_085773913.1|51658_52414_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.4	1.6e-32
>prophage 4
NZ_CP019949	Methylocystis bryophila strain S285 plasmid p1, complete sequence	175021	60726	72340	175021	integrase,transposase	Staphylococcus_phage(25.0%)	7	NA	NA
WP_085773921.1|60726_61431_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	31.0	3.4e-21
WP_158658927.1|62141_63233_+|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
WP_085774006.1|63297_64527_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	32.8	8.6e-28
WP_085773923.1|65561_66095_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_085773924.1|66389_66752_-	hypothetical protein	NA	NA	NA	NA	NA
WP_085773925.1|67145_67919_+	band 7 domain-containing protein	NA	A0A2P1EMF1	Moumouvirus	32.2	1.3e-26
WP_085773926.1|68629_72340_+	response regulator	NA	A0A1V0SGX0	Hokovirus	24.9	8.7e-15
>prophage 5
NZ_CP019949	Methylocystis bryophila strain S285 plasmid p1, complete sequence	175021	79134	85768	175021		Ochrobactrum_phage(50.0%)	5	NA	NA
WP_085773937.1|79134_80469_-	replication initiation protein RepC	NA	L7TKN6	Rhizobium_phage	27.2	2.2e-21
WP_102938232.1|80687_81665_-	plasmid partitioning protein RepB	NA	A0A240F4U0	Ochrobactrum_phage	44.2	1.7e-47
WP_085773938.1|81643_82867_-	plasmid partitioning protein RepA	NA	A0A240F4U1	Ochrobactrum_phage	53.4	2.4e-115
WP_102938237.1|83056_84007_-	DUF2493 domain-containing protein	NA	NA	NA	NA	NA
WP_085773939.1|84712_85768_+	Fic family protein	NA	D7RWK9	Brochothrix_phage	23.7	1.4e-10
>prophage 6
NZ_CP019949	Methylocystis bryophila strain S285 plasmid p1, complete sequence	175021	89089	101685	175021		Erythrobacter_phage(16.67%)	8	NA	NA
WP_085773942.1|89089_89575_+	MucR family transcriptional regulator	NA	A0A1P8VVG0	Erythrobacter_phage	48.0	5.2e-21
WP_085773943.1|89626_90004_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_085773944.1|90581_90794_+	cold-shock protein	NA	A0A1X9IGI9	Lactococcus_phage	47.6	5.3e-10
WP_085773945.1|90882_91902_-	hypothetical protein	NA	A0A0H5AWB1	Pseudomonas_phage	32.4	1.5e-09
WP_085773946.1|91918_96397_-	DEAD/DEAH box helicase family protein	NA	A0A076FMQ0	Aureococcus_anophage	21.8	3.1e-19
WP_085774009.1|96991_99070_-	ParB/RepB/Spo0J family partition protein	NA	G8DH78	Emiliania_huxleyi_virus	29.5	1.6e-26
WP_085773948.1|99152_99524_-	hypothetical protein	NA	NA	NA	NA	NA
WP_085773949.1|99768_101685_-	ATP-dependent helicase	NA	A7KV33	Bacillus_phage	28.4	1.3e-51
>prophage 7
NZ_CP019949	Methylocystis bryophila strain S285 plasmid p1, complete sequence	175021	104910	105810	175021		Pseudomonas_phage(100.0%)	1	NA	NA
WP_085773952.1|104910_105810_-	hypothetical protein	NA	A0A0H5AWB1	Pseudomonas_phage	35.2	1.0e-14
>prophage 8
NZ_CP019949	Methylocystis bryophila strain S285 plasmid p1, complete sequence	175021	109225	109783	175021		Geobacillus_virus(100.0%)	1	NA	NA
WP_085774011.1|109225_109783_+	lytic transglycosylase domain-containing protein	NA	A0A0H3V0Q1	Geobacillus_virus	36.4	1.8e-12
>prophage 9
NZ_CP019949	Methylocystis bryophila strain S285 plasmid p1, complete sequence	175021	135928	137317	175021		Indivirus(100.0%)	1	NA	NA
WP_085773982.1|135928_137317_-	ThiF family adenylyltransferase	NA	A0A1V0SCZ9	Indivirus	24.7	1.0e-05
>prophage 10
NZ_CP019949	Methylocystis bryophila strain S285 plasmid p1, complete sequence	175021	140511	141183	175021		Stenotrophomonas_phage(100.0%)	1	NA	NA
WP_102938238.1|140511_141183_-	SOS response-associated peptidase	NA	B7SYF4	Stenotrophomonas_phage	37.9	1.5e-29
>prophage 11
NZ_CP019949	Methylocystis bryophila strain S285 plasmid p1, complete sequence	175021	146405	147586	175021	transposase	Leptospira_phage(100.0%)	1	NA	NA
WP_102938234.1|146405_147586_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	36.0	5.7e-37
>prophage 12
NZ_CP019949	Methylocystis bryophila strain S285 plasmid p1, complete sequence	175021	152569	154249	175021		Bacillus_phage(100.0%)	1	NA	NA
WP_158658941.1|152569_154249_-	cyclic peptide export ABC transporter	NA	W8CYL7	Bacillus_phage	23.0	3.7e-13
>prophage 13
NZ_CP019949	Methylocystis bryophila strain S285 plasmid p1, complete sequence	175021	162170	171650	175021	transposase	Bodo_saltans_virus(50.0%)	2	NA	NA
WP_102938125.1|162170_163113_-|transposase	IS630 family transposase	transposase	A0A2H4UV16	Bodo_saltans_virus	25.0	4.3e-11
WP_158658942.1|163586_171650_-	amino acid adenylation domain-containing protein	NA	A0A2K9KZV5	Tupanvirus	27.1	1.4e-131
