assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002116855.1_ASM211685v1	NZ_CP017598	Mycobacterium tuberculosis strain Beijing-like/1104 chromosome, complete genome	1	337992-338790	1	CRT	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGGNGCCGCCGGNN	18	0	0	NA	NA	NA	15	15	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_0|NZ_CP017598.1_337507_337690_-,NA	NA|398aa|up_9|NZ_CP017598.1_327685_328879_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_8|NZ_CP017598.1_328914_330597_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_7|NZ_CP017598.1_330613_332809_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_6|NZ_CP017598.1_332922_334056_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_5|NZ_CP017598.1_334052_334673_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_4|NZ_CP017598.1_334769_335351_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_3|NZ_CP017598.1_335280_336006_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_2|NZ_CP017598.1_336095_337016_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_1|NZ_CP017598.1_337055_337484_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_0|NZ_CP017598.1_337507_337690_-	NA	NA|886aa|down_0|NZ_CP017598.1_340855_343513_-	pfam00934, PE, PE family	NA|537aa|down_1|NZ_CP017598.1_343803_345414_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_2|NZ_CP017598.1_345437_346346_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_3|NZ_CP017598.1_346569_348465_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_4|NZ_CP017598.1_348461_350078_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_5|NZ_CP017598.1_350074_354067_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_6|NZ_CP017598.1_354063_354372_+	pfam00934, PE, PE family	NA|514aa|down_7|NZ_CP017598.1_354374_355916_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_8|NZ_CP017598.1_355964_356258_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_9|NZ_CP017598.1_356287_356578_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002116855.1_ASM211685v1	NZ_CP017598	Mycobacterium tuberculosis strain Beijing-like/1104 chromosome, complete genome	2	342177-343145	2	CRT	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGGCNCCGCCGNNGCCG	21	1	3	343017-343040|343017-343040|343017-343040	NZ_CP017598.1_1220942-1220919|NZ_CP017598.1_2426348-2426371|NZ_CP017598.1_2693926-2693903	NA	11	11	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_1|NZ_CP017598.1_337507_337690_-,NA	NA|561aa|up_9|NZ_CP017598.1_328914_330597_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_8|NZ_CP017598.1_330613_332809_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_7|NZ_CP017598.1_332922_334056_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_6|NZ_CP017598.1_334052_334673_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_5|NZ_CP017598.1_334769_335351_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_4|NZ_CP017598.1_335280_336006_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_3|NZ_CP017598.1_336095_337016_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_2|NZ_CP017598.1_337055_337484_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_1|NZ_CP017598.1_337507_337690_-	NA	NA|936aa|up_0|NZ_CP017598.1_337784_340592_-	pfam00934, PE, PE family	NA|537aa|down_0|NZ_CP017598.1_343803_345414_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_1|NZ_CP017598.1_345437_346346_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_2|NZ_CP017598.1_346569_348465_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_3|NZ_CP017598.1_348461_350078_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_4|NZ_CP017598.1_350074_354067_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_5|NZ_CP017598.1_354063_354372_+	pfam00934, PE, PE family	NA|514aa|down_6|NZ_CP017598.1_354374_355916_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_7|NZ_CP017598.1_355964_356258_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_8|NZ_CP017598.1_356287_356578_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|down_9|NZ_CP017598.1_356588_357476_+	pfam14011, ESX-1_EspG, EspG family
GCF_002116855.1_ASM211685v1	NZ_CP017598	Mycobacterium tuberculosis strain Beijing-like/1104 chromosome, complete genome	3	370894-371592	1	CRISPRCasFinder	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	371182-371223|371257-371289	NZ_CP017598.1_379198-379239|NZ_CP017598.1_378013-378045	NA	10	10	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|101aa|up_4|NZ_CP017598.1_367906_368209_+,NA|161aa|down_1|NZ_CP017598.1_380987_381470_-,NA|410aa|down_5|NZ_CP017598.1_383586_384816_+	NA|262aa|up_9|NZ_CP017598.1_362610_363396_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_8|NZ_CP017598.1_363384_364188_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_7|NZ_CP017598.1_364197_365595_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|589aa|up_6|NZ_CP017598.1_365773_367540_+	pfam00934, PE, PE family	NA|76aa|up_5|NZ_CP017598.1_367682_367910_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NZ_CP017598.1_367906_368209_+	NA	NA|74aa|up_3|NZ_CP017598.1_368256_368478_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NZ_CP017598.1_368474_368900_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NZ_CP017598.1_369035_369668_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NZ_CP017598.1_369664_370573_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NZ_CP017598.1_380328_381000_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NZ_CP017598.1_380987_381470_-	NA	NA|239aa|down_2|NZ_CP017598.1_381527_382244_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NZ_CP017598.1_382345_383002_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NZ_CP017598.1_383071_383563_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_5|NZ_CP017598.1_383586_384816_+	NA	NA|621aa|down_6|NZ_CP017598.1_384970_386833_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_7|NZ_CP017598.1_386904_387291_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|221aa|down_8|NZ_CP017598.1_387293_387956_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_9|NZ_CP017598.1_388016_388901_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
GCF_002116855.1_ASM211685v1	NZ_CP017598	Mycobacterium tuberculosis strain Beijing-like/1104 chromosome, complete genome	4	635586-635723	3	CRT	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGACCACGCCGGTG	18	2	3	635604-635621|635604-635621|635688-635705	NZ_CP017598.1_23791-23808|NZ_CP017598.1_1417270-1417287|NZ_CP017598.1_977609-977626	NA	3	3	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|54aa|up_7|NZ_CP017598.1_626340_626502_-,NA|478aa|up_0|NZ_CP017598.1_632601_634035_-,NA|450aa|down_2|NZ_CP017598.1_637358_638708_-,NA|93aa|down_5|NZ_CP017598.1_640238_640517_-	NA|325aa|up_9|NZ_CP017598.1_624110_625085_+	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB	NA|406aa|up_8|NZ_CP017598.1_625126_626344_+	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]	NA|54aa|up_7|NZ_CP017598.1_626340_626502_-	NA	NA|106aa|up_6|NZ_CP017598.1_626548_626866_+	pfam14012, DUF4229, Protein of unknown function (DUF4229)	NA|623aa|up_5|NZ_CP017598.1_627012_628881_+	pfam00934, PE, PE family	NA|336aa|up_4|NZ_CP017598.1_628776_629784_-	TIGR00747, 3-oxoacyl-_synthase_3, 3-oxoacyl-(acyl-carrier-protein) synthase III	NA|293aa|up_3|NZ_CP017598.1_629865_630744_-	TIGR00751, 14-dihydroxy-2-naphthoate_octaprenyltransferase, 1,4-dihydroxy-2-naphthoate octaprenyltransferase	NA|265aa|up_2|NZ_CP017598.1_630760_631555_+	PRK07823, PRK07823, S-methyl-5'-thioadenosine phosphorylase	NA|347aa|up_1|NZ_CP017598.1_631551_632592_+	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs	NA|478aa|up_0|NZ_CP017598.1_632601_634035_-	NA	NA|211aa|down_0|NZ_CP017598.1_636046_636679_+	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|221aa|down_1|NZ_CP017598.1_636675_637338_+	COG3222, COG3222, Uncharacterized protein conserved in bacteria [Function unknown]	NA|450aa|down_2|NZ_CP017598.1_637358_638708_-	NA	NA|381aa|down_3|NZ_CP017598.1_638719_639862_-	PRK07824, PRK07824, o-succinylbenzoate--CoA ligase	NA|101aa|down_4|NZ_CP017598.1_639876_640179_-	pfam11829, DUF3349, Protein of unknown function (DUF3349)	NA|93aa|down_5|NZ_CP017598.1_640238_640517_-	NA	NA|418aa|down_6|NZ_CP017598.1_640513_641767_-	COG0306, PitA, Phosphate/sulphate permeases [Inorganic ion transport and metabolism]	NA|129aa|down_7|NZ_CP017598.1_641886_642273_-	cd07264, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|295aa|down_8|NZ_CP017598.1_642335_643220_-	PRK05866, PRK05866, SDR family oxidoreductase	NA|301aa|down_9|NZ_CP017598.1_643315_644218_-	PRK08321, PRK08321, 1,4-dihydroxy-2-naphthoyl-CoA synthase
GCF_002116855.1_ASM211685v1	NZ_CP017598	Mycobacterium tuberculosis strain Beijing-like/1104 chromosome, complete genome	5	696324-696400	2	CRISPRCasFinder	no	c2c9_V-U4	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|136aa|up_9|NZ_CP017598.1_682219_682627_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_8|NZ_CP017598.1_682686_683373_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_7|NZ_CP017598.1_683526_686160_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_6|NZ_CP017598.1_686182_688570_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_5|NZ_CP017598.1_688707_689430_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_4|NZ_CP017598.1_689426_690224_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_3|NZ_CP017598.1_690225_691113_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_2|NZ_CP017598.1_691118_692333_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|344aa|up_1|NZ_CP017598.1_692329_693361_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|482aa|up_0|NZ_CP017598.1_693357_694803_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NZ_CP017598.1_697535_699086_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NZ_CP017598.1_699137_699530_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NZ_CP017598.1_699526_699784_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NZ_CP017598.1_699966_701202_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NZ_CP017598.1_701452_701866_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NZ_CP017598.1_701862_702099_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NZ_CP017598.1_702202_702709_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NZ_CP017598.1_702822_703293_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NZ_CP017598.1_703336_704098_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NZ_CP017598.1_704154_704466_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_002116855.1_ASM211685v1	NZ_CP017598	Mycobacterium tuberculosis strain Beijing-like/1104 chromosome, complete genome	6	1578977-1580048	3	CRISPRCasFinder	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGGCACCGCCGTCGCCGAT	32	1	1	1579177-1579198	NZ_CP017598.1_1216035-1216014	NA	15	15	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|106aa|up_7|NZ_CP017598.1_1570740_1571058_+,NA	NA|103aa|up_9|NZ_CP017598.1_1568255_1568564_+	pfam00934, PE, PE family	NA|540aa|up_8|NZ_CP017598.1_1568560_1570180_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|106aa|up_7|NZ_CP017598.1_1570740_1571058_+	NA	NA|209aa|up_6|NZ_CP017598.1_1571192_1571819_+	PRK00300, gmk, guanylate kinase; Provisional	NA|111aa|up_5|NZ_CP017598.1_1571884_1572217_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|419aa|up_4|NZ_CP017598.1_1572232_1573489_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|404aa|up_3|NZ_CP017598.1_1573616_1574828_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|493aa|up_2|NZ_CP017598.1_1574900_1576379_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|462aa|up_1|NZ_CP017598.1_1576375_1577761_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|345aa|up_0|NZ_CP017598.1_1577838_1578873_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|134aa|down_0|NZ_CP017598.1_1580902_1581304_-	cd18741, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|86aa|down_1|NZ_CP017598.1_1581300_1581558_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|320aa|down_2|NZ_CP017598.1_1581640_1582600_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|321aa|down_3|NZ_CP017598.1_1582624_1583587_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|201aa|down_4|NZ_CP017598.1_1583720_1584323_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|656aa|down_5|NZ_CP017598.1_1584403_1586371_+	PRK14873, PRK14873, primosomal protein N'	NA|275aa|down_6|NZ_CP017598.1_1586388_1587213_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|161aa|down_7|NZ_CP017598.1_1587381_1587864_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|275aa|down_8|NZ_CP017598.1_1587935_1588760_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|313aa|down_9|NZ_CP017598.1_1588956_1589895_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed
GCF_002116855.1_ASM211685v1	NZ_CP017598	Mycobacterium tuberculosis strain Beijing-like/1104 chromosome, complete genome	7	2077295-2077549	4	CRT	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2077376-2077393|2077376-2077393|2077466-2077483	NZ_CP017598.1_405494-405477|NZ_CP017598.1_611658-611641|NZ_CP017598.1_3443242-3443225	NA	5	5	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NZ_CP017598.1_2076654_2076918_-,NA	NA|165aa|up_9|NZ_CP017598.1_2063004_2063499_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_8|NZ_CP017598.1_2063846_2064524_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|NZ_CP017598.1_2064882_2067708_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NZ_CP017598.1_2067934_2068795_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NZ_CP017598.1_2068835_2069702_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NZ_CP017598.1_2069706_2071593_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NZ_CP017598.1_2071608_2073642_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NZ_CP017598.1_2073761_2075987_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_CP017598.1_2076262_2076658_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_CP017598.1_2076654_2076918_-	NA	NA|346aa|down_0|NZ_CP017598.1_2078686_2079724_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_CP017598.1_2079723_2081091_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|479aa|down_2|NZ_CP017598.1_2081264_2082701_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|NZ_CP017598.1_2082736_2084188_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NZ_CP017598.1_2084217_2085168_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NZ_CP017598.1_2085182_2085599_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NZ_CP017598.1_2085876_2086299_+	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|101aa|down_7|NZ_CP017598.1_2086347_2086650_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NZ_CP017598.1_2086646_2086961_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NZ_CP017598.1_2086960_2088694_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_002116855.1_ASM211685v1	NZ_CP017598	Mycobacterium tuberculosis strain Beijing-like/1104 chromosome, complete genome	8	2160298-2160517	4	CRISPRCasFinder	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_2|NZ_CP017598.1_2148977_2149385_-,NA|127aa|down_5|NZ_CP017598.1_2168033_2168414_-	NA|155aa|up_9|NZ_CP017598.1_2142305_2142770_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_8|NZ_CP017598.1_2142945_2145168_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_7|NZ_CP017598.1_2145205_2145649_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_6|NZ_CP017598.1_2145762_2146356_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_5|NZ_CP017598.1_2146438_2147044_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_4|NZ_CP017598.1_2147143_2148148_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_3|NZ_CP017598.1_2148247_2149000_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_2|NZ_CP017598.1_2148977_2149385_-	NA	NA|767aa|up_1|NZ_CP017598.1_2149519_2151820_+	PLN02892, PLN02892, isocitrate lyase	NA|421aa|up_0|NZ_CP017598.1_2155874_2157136_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|155aa|down_0|NZ_CP017598.1_2162544_2163009_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NZ_CP017598.1_2163106_2163970_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NZ_CP017598.1_2164007_2165279_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NZ_CP017598.1_2165550_2166666_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NZ_CP017598.1_2166656_2167997_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NZ_CP017598.1_2168033_2168414_-	NA	NA|621aa|down_6|NZ_CP017598.1_2168570_2170433_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NZ_CP017598.1_2170440_2170920_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NZ_CP017598.1_2171156_2171930_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|256aa|down_9|NZ_CP017598.1_2171933_2172701_-	PRK05867, PRK05867, SDR family oxidoreductase
GCF_002116855.1_ASM211685v1	NZ_CP017598	Mycobacterium tuberculosis strain Beijing-like/1104 chromosome, complete genome	9	3116990-3118063	1,5,5	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,csm3gr7,csm2gr11,cas10,cas6	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Type III-B,Type III-A,Type III-C,Type III-D	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,NNNNNNNNGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,44	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	13,13,14	14	TypeIII-B,TypeIII-A,TypeIII-C,TypeIII-D	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_8|NZ_CP017598.1_3110269_3110524_-,NA|135aa|up_7|NZ_CP017598.1_3110671_3111076_+,NA|64aa|up_6|NZ_CP017598.1_3111072_3111264_+,NA|86aa|up_4|NZ_CP017598.1_3112850_3113108_+,NA|104aa|up_3|NZ_CP017598.1_3113212_3113524_+,NA|203aa|up_2|NZ_CP017598.1_3113943_3114552_+,NA	NA|92aa|up_9|NZ_CP017598.1_3109818_3110094_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_8|NZ_CP017598.1_3110269_3110524_-	NA	NA|135aa|up_7|NZ_CP017598.1_3110671_3111076_+	NA	NA|64aa|up_6|NZ_CP017598.1_3111072_3111264_+	NA	NA|385aa|up_5|NZ_CP017598.1_3111462_3112617_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NZ_CP017598.1_3112850_3113108_+	NA	NA|104aa|up_3|NZ_CP017598.1_3113212_3113524_+	NA	NA|203aa|up_2|NZ_CP017598.1_3113943_3114552_+	NA	NA|470aa|up_1|NZ_CP017598.1_3114622_3116032_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NZ_CP017598.1_3116028_3116841_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NZ_CP017598.1_3118094_3119356_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	csm3gr7|237aa|down_1|NZ_CP017598.1_3119719_3120430_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_2|NZ_CP017598.1_3120439_3120814_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_3|NZ_CP017598.1_3120810_3123249_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_4|NZ_CP017598.1_3123245_3123968_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_5|NZ_CP017598.1_3124367_3124913_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]	NA|295aa|down_6|NZ_CP017598.1_3125184_3126069_-	COG2253, COG2253, Uncharacterized conserved protein [Function unknown]	NA|296aa|down_7|NZ_CP017598.1_3126071_3126959_-	pfam09407, AbiEi_1, AbiEi antitoxin C-terminal domain	NA|182aa|down_8|NZ_CP017598.1_3127263_3127809_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]	NA|90aa|down_9|NZ_CP017598.1_3127805_3128075_-	COG5552, COG5552, Uncharacterized conserved protein [Function unknown]
GCF_002116855.1_ASM211685v1	NZ_CP017598	Mycobacterium tuberculosis strain Beijing-like/1104 chromosome, complete genome	10	3659264-3659382	6	CRISPRCasFinder	no	cas3	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Unclear	GCCCCTGTGAGTCGAGTGAGCGGAACGAAC	30	1	1	3659294-3659352	NZ_CP017598.1_3659357-3659415	NA	1	1	Unclear	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA,NA|138aa|down_6|NZ_CP017598.1_3665015_3665429_-,NA|126aa|down_7|NZ_CP017598.1_3665463_3665841_-	NA|719aa|up_9|NZ_CP017598.1_3646090_3648247_+	COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and metabolism]	NA|223aa|up_8|NZ_CP017598.1_3648243_3648912_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|395aa|up_7|NZ_CP017598.1_3649012_3650197_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|765aa|up_6|NZ_CP017598.1_3650201_3652496_+	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|390aa|up_5|NZ_CP017598.1_3652484_3653654_-	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|175aa|up_4|NZ_CP017598.1_3653678_3654203_-	PLN02948, PLN02948, phosphoribosylaminoimidazole carboxylase	NA|430aa|up_3|NZ_CP017598.1_3654199_3655489_-	TIGR01161, N5-carboxyaminoimidazole_ribonucleotide_synthase, phosphoribosylaminoimidazole carboxylase, PurK protein	NA|273aa|up_2|NZ_CP017598.1_3655442_3656261_+	COG2246, COG2246, Predicted membrane protein [Function unknown]	NA|173aa|up_1|NZ_CP017598.1_3656215_3656734_-	pfam03703, bPH_2, Bacterial PH domain	NA|267aa|up_0|NZ_CP017598.1_3656776_3657577_-	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]	NA|223aa|down_0|NZ_CP017598.1_3659648_3660317_+	PRK00148, PRK00148, Maf-like protein; Reviewed	NA|298aa|down_1|NZ_CP017598.1_3660357_3661251_+	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|144aa|down_2|NZ_CP017598.1_3661247_3661679_+	COG2166, sufE, Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]	NA|601aa|down_3|NZ_CP017598.1_3661786_3663589_+	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|262aa|down_4|NZ_CP017598.1_3663598_3664384_-	PRK07122, PRK07122, RNA polymerase sigma factor SigF; Reviewed	NA|146aa|down_5|NZ_CP017598.1_3664380_3664818_-	COG2172, RsbW, Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]	NA|138aa|down_6|NZ_CP017598.1_3665015_3665429_-	NA	NA|126aa|down_7|NZ_CP017598.1_3665463_3665841_-	NA	NA|450aa|down_8|NZ_CP017598.1_3665874_3667224_-	PRK08297, PRK08297, L-lysine aminotransferase; Provisional	NA|151aa|down_9|NZ_CP017598.1_3667274_3667727_-	smart00344, HTH_ASNC, helix_turn_helix ASNC type
GCF_002116855.1_ASM211685v1	NZ_CP017598	Mycobacterium tuberculosis strain Beijing-like/1104 chromosome, complete genome	11	3743462-3744038	6	CRT	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCGCCGTTGCCNCCGNNGCCGCCG	25	0	0	NA	NA	NA	7	7	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA,NA|96aa|down_4|NZ_CP017598.1_3758270_3758558_-,NA|87aa|down_8|NZ_CP017598.1_3771677_3771938_-	NA|282aa|up_9|NZ_CP017598.1_3719226_3720072_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|147aa|up_8|NZ_CP017598.1_3720546_3720987_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_7|NZ_CP017598.1_3721020_3721890_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_6|NZ_CP017598.1_3721910_3722921_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|211aa|up_5|NZ_CP017598.1_3723205_3723838_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_4|NZ_CP017598.1_3723904_3725134_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_3|NZ_CP017598.1_3725416_3726766_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_2|NZ_CP017598.1_3726777_3727917_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_1|NZ_CP017598.1_3727913_3728645_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|3690aa|up_0|NZ_CP017598.1_3728653_3739723_-	pfam00823, PPE, PPE family	NA|86aa|down_0|NZ_CP017598.1_3746140_3746398_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|NZ_CP017598.1_3746653_3756127_-	pfam00823, PPE, PPE family	NA|149aa|down_2|NZ_CP017598.1_3756752_3757199_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|273aa|down_3|NZ_CP017598.1_3757235_3758054_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|down_4|NZ_CP017598.1_3758270_3758558_-	NA	NA|265aa|down_5|NZ_CP017598.1_3770287_3771082_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_6|NZ_CP017598.1_3771163_3771535_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|137aa|down_7|NZ_CP017598.1_3771432_3771843_-	pfam01565, FAD_binding_4, FAD binding domain	NA|87aa|down_8|NZ_CP017598.1_3771677_3771938_-	NA	NA|130aa|down_9|NZ_CP017598.1_3772052_3772442_+	pfam05305, DUF732, Protein of unknown function (DUF732)
GCF_002116855.1_ASM211685v1	NZ_CP017598	Mycobacterium tuberculosis strain Beijing-like/1104 chromosome, complete genome	12	3765425-3765551	2	PILER-CR	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTTGCCGATGCCGGTGTTGAAA	22	0	0	NA	NA	NA	2	2	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|96aa|up_0|NZ_CP017598.1_3758270_3758558_-,NA|87aa|down_3|NZ_CP017598.1_3771677_3771938_-	NA|450aa|up_9|NZ_CP017598.1_3725416_3726766_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_8|NZ_CP017598.1_3726777_3727917_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_7|NZ_CP017598.1_3727913_3728645_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|3690aa|up_6|NZ_CP017598.1_3728653_3739723_-	pfam00823, PPE, PPE family	NA|1980aa|up_5|NZ_CP017598.1_3739771_3745711_-	pfam00934, PE, PE family	NA|86aa|up_4|NZ_CP017598.1_3746140_3746398_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|up_3|NZ_CP017598.1_3746653_3756127_-	pfam00823, PPE, PPE family	NA|149aa|up_2|NZ_CP017598.1_3756752_3757199_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|273aa|up_1|NZ_CP017598.1_3757235_3758054_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|up_0|NZ_CP017598.1_3758270_3758558_-	NA	NA|265aa|down_0|NZ_CP017598.1_3770287_3771082_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_1|NZ_CP017598.1_3771163_3771535_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|137aa|down_2|NZ_CP017598.1_3771432_3771843_-	pfam01565, FAD_binding_4, FAD binding domain	NA|87aa|down_3|NZ_CP017598.1_3771677_3771938_-	NA	NA|130aa|down_4|NZ_CP017598.1_3772052_3772442_+	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|98aa|down_5|NZ_CP017598.1_3772455_3772749_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|282aa|down_6|NZ_CP017598.1_3772745_3773591_-	PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	NA|92aa|down_7|NZ_CP017598.1_3773714_3773990_+	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|86aa|down_8|NZ_CP017598.1_3773986_3774244_+	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system	NA|397aa|down_9|NZ_CP017598.1_3774285_3775476_+	cd02803, OYE_like_FMN_family, Old yellow enzyme (OYE)-like FMN binding domain
GCF_002116855.1_ASM211685v1	NZ_CP017598	Mycobacterium tuberculosis strain Beijing-like/1104 chromosome, complete genome	13	3852968-3853057	7	CRISPRCasFinder	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCAGGCGTTGGGCTGGCTGCCGAT	24	0	0	NA	NA	NA	1	1	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|77aa|up_8|NZ_CP017598.1_3845004_3845235_+,NA|121aa|up_7|NZ_CP017598.1_3845338_3845701_-,NA|73aa|up_2|NZ_CP017598.1_3851033_3851252_-,NA|121aa|down_0|NZ_CP017598.1_3854042_3854405_-,NA|52aa|down_2|NZ_CP017598.1_3856246_3856402_-,NA|52aa|down_3|NZ_CP017598.1_3856426_3856582_-,NA|238aa|down_6|NZ_CP017598.1_3860617_3861331_-	NA|409aa|up_9|NZ_CP017598.1_3843818_3845045_-	PRK00053, alr, alanine racemase; Reviewed	NA|77aa|up_8|NZ_CP017598.1_3845004_3845235_+	NA	NA|121aa|up_7|NZ_CP017598.1_3845338_3845701_-	NA	NA|177aa|up_6|NZ_CP017598.1_3846659_3847190_+	pfam00823, PPE, PPE family	NA|252aa|up_5|NZ_CP017598.1_3847507_3848263_-	COG1484, DnaC, DNA replication protein [DNA replication, recombination, and repair]	NA|337aa|up_4|NZ_CP017598.1_3848346_3849357_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|553aa|up_3|NZ_CP017598.1_3849382_3851041_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|73aa|up_2|NZ_CP017598.1_3851033_3851252_-	NA	NA|100aa|up_1|NZ_CP017598.1_3851746_3852046_+	pfam00934, PE, PE family	NA|181aa|up_0|NZ_CP017598.1_3852131_3852674_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|121aa|down_0|NZ_CP017598.1_3854042_3854405_-	NA	NA|179aa|down_1|NZ_CP017598.1_3854567_3855104_+	pfam00823, PPE, PPE family	NA|52aa|down_2|NZ_CP017598.1_3856246_3856402_-	NA	NA|52aa|down_3|NZ_CP017598.1_3856426_3856582_-	NA	NA|461aa|down_4|NZ_CP017598.1_3857774_3859157_-	TIGR01788, Glutamate_decarboxylase_alpha_GAD-alpha	NA|474aa|down_5|NZ_CP017598.1_3859194_3860616_-	pfam01256, Carb_kinase, Carbohydrate kinase	NA|238aa|down_6|NZ_CP017598.1_3860617_3861331_-	NA	NA|285aa|down_7|NZ_CP017598.1_3861341_3862196_-	pfam14494, DUF4436, Domain of unknown function (DUF4436)	NA|625aa|down_8|NZ_CP017598.1_3862417_3864292_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|159aa|down_9|NZ_CP017598.1_3864313_3864790_+	pfam10708, DUF2510, Protein of unknown function (DUF2510)
GCF_002116855.1_ASM211685v1	NZ_CP017598	Mycobacterium tuberculosis strain Beijing-like/1104 chromosome, complete genome	14	3917652-3918803	7	CRT	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	CNNCGGCGGCNNCGGCGGCNNNGGCGGNNNCGGCGGC	37	8	8	3917937-3917980|3918018-3918049|3918087-3918139|3918177-3918217|3918324-3918358|3918396-3918433|3918471-3918496|3918534-3918559	NZ_CP017598.1_3917326-3917369|NZ_CP017598.1_3917407-3917438|NZ_CP017598.1_3917476-3917528|NZ_CP017598.1_3917566-3917606|NZ_CP017598.1_3917109-3917143|NZ_CP017598.1_3917179-3917216|NZ_CP017598.1_3917263-3917288|NZ_CP017598.1_3917398-3917423	NA	15	15	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|55aa|up_0|NZ_CP017598.1_3914175_3914340_+,NA|280aa|down_2|NZ_CP017598.1_3922117_3922957_+	NA|1083aa|up_9|NZ_CP017598.1_3901739_3904988_+	TIGR03607, TIGR03607, patatin-related protein	NA|498aa|up_8|NZ_CP017598.1_3905011_3906505_-	TIGR02946, Putative_diacyglycerol_O-acyltransferase_Mb3115, acyltransferase, WS/DGAT/MGAT	NA|230aa|up_7|NZ_CP017598.1_3906595_3907285_-	pfam11139, SfLAP, Sap, sulfolipid-1-addressing protein	NA|261aa|up_6|NZ_CP017598.1_3907426_3908209_-	pfam10708, DUF2510, Protein of unknown function (DUF2510)	NA|513aa|up_5|NZ_CP017598.1_3909181_3910720_+	COG1316, LytR, Transcriptional regulator [Transcription]	NA|315aa|up_4|NZ_CP017598.1_3910725_3911670_-	PRK05875, PRK05875, short chain dehydrogenase; Provisional	NA|150aa|up_3|NZ_CP017598.1_3911875_3912325_+	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|377aa|up_2|NZ_CP017598.1_3912277_3913408_-	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|108aa|up_1|NZ_CP017598.1_3913770_3914094_+	pfam03551, PadR, Transcriptional regulator PadR-like family	NA|55aa|up_0|NZ_CP017598.1_3914175_3914340_+	NA	NA|549aa|down_0|NZ_CP017598.1_3919510_3921157_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|264aa|down_1|NZ_CP017598.1_3921230_3922022_+	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|280aa|down_2|NZ_CP017598.1_3922117_3922957_+	NA	NA|399aa|down_3|NZ_CP017598.1_3923011_3924208_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|237aa|down_4|NZ_CP017598.1_3924236_3924947_+	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|348aa|down_5|NZ_CP017598.1_3925011_3926055_-	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|304aa|down_6|NZ_CP017598.1_3926207_3927119_+	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|355aa|down_7|NZ_CP017598.1_3927134_3928199_+	PRK07937, PRK07937, lipid-transfer protein; Provisional	NA|395aa|down_8|NZ_CP017598.1_3928215_3929400_+	PRK08313, PRK08313, thiolase domain-containing protein	NA|344aa|down_9|NZ_CP017598.1_3929441_3930473_+	cd14952, NHL_PKND_like, NHL repeat domain of the protein kinase PknD
GCF_002116855.1_ASM211685v1	NZ_CP017598	Mycobacterium tuberculosis strain Beijing-like/1104 chromosome, complete genome	15	4078928-4079016	8	CRISPRCasFinder	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_8|NZ_CP017598.1_4069514_4070285_-,NA|119aa|up_3|NZ_CP017598.1_4075419_4075776_+,NA|52aa|up_2|NZ_CP017598.1_4075875_4076031_+,NA|233aa|up_0|NZ_CP017598.1_4078032_4078731_-,NA|126aa|down_6|NZ_CP017598.1_4084251_4084629_+	NA|288aa|up_9|NZ_CP017598.1_4067896_4068760_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_8|NZ_CP017598.1_4069514_4070285_-	NA	NA|549aa|up_7|NZ_CP017598.1_4070281_4071928_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_6|NZ_CP017598.1_4071924_4072788_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_5|NZ_CP017598.1_4072780_4073707_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_4|NZ_CP017598.1_4073708_4075334_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|119aa|up_3|NZ_CP017598.1_4075419_4075776_+	NA	NA|52aa|up_2|NZ_CP017598.1_4075875_4076031_+	NA	NA|652aa|up_1|NZ_CP017598.1_4076041_4077997_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_CP017598.1_4078032_4078731_-	NA	NA|173aa|down_0|NZ_CP017598.1_4079076_4079595_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_CP017598.1_4079595_4080579_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_CP017598.1_4080571_4081765_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NZ_CP017598.1_4081770_4082592_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NZ_CP017598.1_4082723_4083407_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NZ_CP017598.1_4083406_4084144_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NZ_CP017598.1_4084251_4084629_+	NA	NA|225aa|down_7|NZ_CP017598.1_4084727_4085402_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NZ_CP017598.1_4085507_4086302_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NZ_CP017598.1_4086308_4086764_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
