assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002105735.1_ASM210573v1	NZ_CP020835	Escherichia coli strain CFSAN051542 chromosome, complete genome	1	829114-829208	1	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,cas8e,cas1,cas2,DEDDh,DinG,WYL,Cas14u_CAS-V,TnsE_C	Orphan	GAGCGCTGTTGCCAGTGGCAACA	23	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,cas8e,cas1,cas2,DEDDh,DinG,WYL,Cas14u_CAS-V,TnsE_C	NA|83aa|up_1|NZ_CP020835.1_827454_827703_+,NA|185aa|down_1|NZ_CP020835.1_830095_830650_+	NA|620aa|up_9|NZ_CP020835.1_814788_816648_+	PRK10507, PRK10507, bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional	NA|320aa|up_8|NZ_CP020835.1_818042_819002_+	PRK09681, PRK09681, putative type II secretion protein GspC; Provisional	NA|179aa|up_7|NZ_CP020835.1_821429_821966_+	PRK09731, PRK09731, type II secretion system protein	NA|292aa|up_6|NZ_CP020835.1_822222_823098_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|457aa|up_5|NZ_CP020835.1_823090_824461_+	TIGR00665, DnaB, replicative DNA helicase	NA|567aa|up_4|NZ_CP020835.1_824457_826158_+	TIGR03764, ICE_PFGI_1_parB, integrating conjugative element, PFGI_1 class, ParB family protein	NA|237aa|up_3|NZ_CP020835.1_826150_826861_+	pfam10979, DUF2786, Protein of unknown function (DUF2786)	NA|197aa|up_2|NZ_CP020835.1_826867_827458_+	pfam11198, DUF2857, Protein of unknown function (DUF2857)	NA|83aa|up_1|NZ_CP020835.1_827454_827703_+	NA	NA|413aa|up_0|NZ_CP020835.1_827802_829041_+	pfam13730, HTH_36, Helix-turn-helix domain	NA|242aa|down_0|NZ_CP020835.1_829368_830094_+	pfam08900, DUF1845, Domain of unknown function (DUF1845)	NA|185aa|down_1|NZ_CP020835.1_830095_830650_+	NA	NA|670aa|down_2|NZ_CP020835.1_830665_832675_+	PRK07726, PRK07726, DNA topoisomerase 3	NA|157aa|down_3|NZ_CP020835.1_833310_833781_+	pfam12101, DUF3577, Protein of unknown function (DUF3577)	NA|179aa|down_4|NZ_CP020835.1_833841_834378_+	PRK09010, PRK09010, single-stranded DNA-binding protein; Provisional	NA|81aa|down_5|NZ_CP020835.1_834442_834685_+	pfam13711, DUF4160, Domain of unknown function (DUF4160)	NA|83aa|down_6|NZ_CP020835.1_834668_834917_+	pfam10387, DUF2442, Protein of unknown function (DUF2442)	NA|222aa|down_7|NZ_CP020835.1_835053_835719_+	TIGR03748, conj_PilL, conjugative transfer region protein, TIGR03748 family	NA|253aa|down_8|NZ_CP020835.1_835715_836474_+	TIGR04211, hypothetical_protein, SH3 domain protein	NA|241aa|down_9|NZ_CP020835.1_836485_837208_+	TIGR03759, conj_TIGR03759, integrating conjugative element protein, PFL_4693 family
GCF_002105735.1_ASM210573v1	NZ_CP020835	Escherichia coli strain CFSAN051542 chromosome, complete genome	2	1121327-1122148	1,2,1,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no		c2c9_V-U4,cas3,csa3,cas8e,cas1,cas2,DEDDh,DinG,WYL,Cas14u_CAS-V,TnsE_C	Orphan	GAGTTCCCCGCGCCAGCGGGGATAAACCGAC,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACC	31,29,29,28	0	0	NA	NA	I-E:I-E:I-E:I-E	11,13,13,11	13	Orphan	c2c9_V-U4,cas3,csa3,cas8e,cas1,cas2,DEDDh,DinG,WYL,Cas14u_CAS-V,TnsE_C	NA|47aa|up_1|NZ_CP020835.1_1120036_1120177_-,NA	NA|434aa|up_9|NZ_CP020835.1_1110733_1112035_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP020835.1_1112082_1114317_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP020835.1_1114394_1114643_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP020835.1_1114642_1114978_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP020835.1_1115048_1115840_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP020835.1_1116067_1117705_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP020835.1_1117792_1119091_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP020835.1_1119150_1120023_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP020835.1_1120036_1120177_-	NA	NA|224aa|up_0|NZ_CP020835.1_1120315_1120987_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP020835.1_1122786_1124265_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP020835.1_1124291_1125569_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP020835.1_1125887_1126673_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP020835.1_1126742_1128197_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|NZ_CP020835.1_1128290_1129628_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP020835.1_1129605_1130385_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP020835.1_1130381_1131242_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP020835.1_1131389_1131965_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP020835.1_1131981_1132242_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP020835.1_1132232_1133504_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_002105735.1_ASM210573v1	NZ_CP020835	Escherichia coli strain CFSAN051542 chromosome, complete genome	3	1146432-1146948	3,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cas1,cas2	c2c9_V-U4,cas3,csa3,cas8e,cas1,cas2,DEDDh,DinG,WYL,Cas14u_CAS-V,TnsE_C	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	7,7,8	8	TypeI-E	c2c9_V-U4,cas3,csa3,cas8e,cas1,cas2,DEDDh,DinG,WYL,Cas14u_CAS-V,TnsE_C	NA,NA	NA|424aa|up_9|NZ_CP020835.1_1132232_1133504_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|122aa|up_8|NZ_CP020835.1_1133581_1133947_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_7|NZ_CP020835.1_1134262_1136062_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_6|NZ_CP020835.1_1136061_1137774_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_5|NZ_CP020835.1_1137848_1138583_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_4|NZ_CP020835.1_1138847_1139000_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|up_3|NZ_CP020835.1_1140542_1143242_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_2|NZ_CP020835.1_1143339_1144902_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas1|307aa|up_1|NZ_CP020835.1_1145121_1146042_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP020835.1_1146041_1146335_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP020835.1_1146968_1148006_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP020835.1_1148257_1149166_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP020835.1_1149167_1150595_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP020835.1_1150594_1151200_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP020835.1_1151249_1151573_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP020835.1_1151766_1152078_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP020835.1_1152096_1152807_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP020835.1_1152806_1153286_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP020835.1_1153282_1154332_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP020835.1_1154312_1155074_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_002105735.1_ASM210573v1	NZ_CP020835	Escherichia coli strain CFSAN051542 chromosome, complete genome	4	1240243-1240340	4	CRISPRCasFinder	no	csa3	c2c9_V-U4,cas3,csa3,cas8e,cas1,cas2,DEDDh,DinG,WYL,Cas14u_CAS-V,TnsE_C	Type I-A	ATGGAATCACGTAATTCATATGA	23	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,cas8e,cas1,cas2,DEDDh,DinG,WYL,Cas14u_CAS-V,TnsE_C	NA,NA|40aa|down_1|NZ_CP020835.1_1241835_1241955_+,NA|349aa|down_3|NZ_CP020835.1_1246877_1247924_-,NA|81aa|down_6|NZ_CP020835.1_1249706_1249949_+	NA|175aa|up_9|NZ_CP020835.1_1226551_1227076_-	cd01527, RHOD_YgaP, Member of the Rhodanese Homology Domain superfamily	csa3|100aa|up_8|NZ_CP020835.1_1227085_1227385_-	COG0640, ArsR, Predicted transcriptional regulators [Transcription]	NA|53aa|up_7|NZ_CP020835.1_1227567_1227726_+	COG0401, COG0401, Uncharacterized homolog of Blt101 [Function unknown]	NA|150aa|up_6|NZ_CP020835.1_1227809_1228259_+	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|221aa|up_5|NZ_CP020835.1_1228259_1228922_-	PRK11534, PRK11534, DNA-binding transcriptional regulator CsiR; Provisional	NA|467aa|up_4|NZ_CP020835.1_1228942_1230343_-	PRK10197, PRK10197, GABA permease	NA|427aa|up_3|NZ_CP020835.1_1230653_1231934_-	PRK08088, PRK08088, 4-aminobutyrate--2-oxoglutarate transaminase	NA|483aa|up_2|NZ_CP020835.1_1231947_1233396_-	PRK11241, gabD, NADP-dependent succinate-semialdehyde dehydrogenase I	NA|423aa|up_1|NZ_CP020835.1_1233418_1234687_-	PRK11728, PRK11728, L-2-hydroxyglutarate oxidase	NA|326aa|up_0|NZ_CP020835.1_1234705_1235683_-	PRK02963, PRK02963, carbon starvation induced protein CsiD	NA|73aa|down_0|NZ_CP020835.1_1241462_1241681_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|40aa|down_1|NZ_CP020835.1_1241835_1241955_+	NA	NA|1523aa|down_2|NZ_CP020835.1_1242019_1246588_+	TIGR01414, Contains:_AIDA-I_translocator, outer membrane autotransporter barrel domain	NA|349aa|down_3|NZ_CP020835.1_1246877_1247924_-	NA	NA|347aa|down_4|NZ_CP020835.1_1247913_1248954_-	PHA02601, int, integrase; Provisional	NA|211aa|down_5|NZ_CP020835.1_1248957_1249590_-	pfam16452, Phage_CI_C, Bacteriophage CI repressor C-terminal domain	NA|81aa|down_6|NZ_CP020835.1_1249706_1249949_+	NA	NA|170aa|down_7|NZ_CP020835.1_1249981_1250491_+	pfam06892, Phage_CP76, Phage regulatory protein CII (CP76)	NA|67aa|down_8|NZ_CP020835.1_1250498_1250699_+	pfam10893, DUF2724, Protein of unknown function (DUF2724)	NA|114aa|down_9|NZ_CP020835.1_1250662_1251004_+	pfam17282, DUF5347, Family of unknown function (DUF5347)
GCF_002105735.1_ASM210573v1	NZ_CP020835	Escherichia coli strain CFSAN051542 chromosome, complete genome	5	1658137-1658254	5	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,cas8e,cas1,cas2,DEDDh,DinG,WYL,Cas14u_CAS-V,TnsE_C	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,cas8e,cas1,cas2,DEDDh,DinG,WYL,Cas14u_CAS-V,TnsE_C	NA,NA	NA|62aa|up_9|NZ_CP020835.1_1647422_1647608_-	PRK09956, PRK09956, ISNCY family transposase	NA|300aa|up_8|NZ_CP020835.1_1647620_1648520_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_CP020835.1_1648712_1649903_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_CP020835.1_1649899_1651159_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_CP020835.1_1651148_1652777_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP020835.1_1653049_1654408_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP020835.1_1654412_1655489_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP020835.1_1655951_1656602_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP020835.1_1656655_1656910_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP020835.1_1656909_1658040_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP020835.1_1658273_1660559_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1245aa|down_1|NZ_CP020835.1_1661254_1664989_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP020835.1_1665129_1665852_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP020835.1_1665998_1668626_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP020835.1_1668774_1670463_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP020835.1_1670459_1671083_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|NZ_CP020835.1_1671226_1675621_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_CP020835.1_1675621_1677271_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NZ_CP020835.1_1677275_1678052_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|221aa|down_9|NZ_CP020835.1_1679727_1680390_-	PRK09920, PRK09920, acetyl-CoA:acetoacetyl-CoA transferase subunit alpha; Provisional
GCF_002105735.1_ASM210573v1	NZ_CP020835	Escherichia coli strain CFSAN051542 chromosome, complete genome	6	3048275-3048415	6	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,cas8e,cas1,cas2,DEDDh,DinG,WYL,Cas14u_CAS-V,TnsE_C	Orphan	GCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACAAACCCGAACCGTAGGT	53	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,cas8e,cas1,cas2,DEDDh,DinG,WYL,Cas14u_CAS-V,TnsE_C	NA,NA	NA|293aa|up_9|NZ_CP020835.1_3035345_3036224_-	PRK15480, PRK15480, glucose-1-phosphate thymidylyltransferase RfbA; Provisional	NA|300aa|up_8|NZ_CP020835.1_3036281_3037181_-	PRK09987, PRK09987, dTDP-4-dehydrorhamnose reductase; Provisional	NA|362aa|up_7|NZ_CP020835.1_3037180_3038266_-	PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; Provisional	NA|298aa|up_6|NZ_CP020835.1_3038638_3039532_-	PRK10122, PRK10122, UTP--glucose-1-phosphate uridylyltransferase GalF	NA|465aa|up_5|NZ_CP020835.1_3039706_3041101_-	PRK10123, wcaM, putative colanic acid biosynthesis protein; Provisional	NA|407aa|up_4|NZ_CP020835.1_3041111_3042332_-	TIGR04005, wcaL, colanic acid biosynthesis glycosyltransferase WcaL	NA|427aa|up_3|NZ_CP020835.1_3042328_3043609_-	TIGR04006, wcaK, colanic acid biosynthesis pyruvyl transferase WcaK	NA|493aa|up_2|NZ_CP020835.1_3043884_3045363_-	PRK10459, PRK10459, MOP flippase family protein	NA|465aa|up_1|NZ_CP020835.1_3045364_3046759_-	PRK10124, PRK10124, putative UDP-glucose lipid carrier transferase; Provisional	NA|457aa|up_0|NZ_CP020835.1_3046813_3048184_-	PRK15414, PRK15414, phosphomannomutase	NA|479aa|down_0|NZ_CP020835.1_3048464_3049901_-	PRK15460, cpsB, mannose-1-phosphate guanyltransferase; Provisional	NA|408aa|down_1|NZ_CP020835.1_3049903_3051127_-	TIGR04007, wcaI, colanic acid biosynthesis glycosyl transferase WcaI	NA|160aa|down_2|NZ_CP020835.1_3051123_3051603_-	PRK15434, PRK15434, GDP-mannose mannosyl hydrolase	NA|322aa|down_3|NZ_CP020835.1_3051605_3052571_-	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs	NA|374aa|down_4|NZ_CP020835.1_3052573_3053695_-	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]	NA|183aa|down_5|NZ_CP020835.1_3053721_3054270_-	TIGR04008, WcaF, colanic acid biosynthesis acetyltransferase WcaF	NA|249aa|down_6|NZ_CP020835.1_3054285_3055032_-	PRK10063, PRK10063, colanic acid biosynthesis glycosyltransferase WcaE	NA|406aa|down_7|NZ_CP020835.1_3055042_3056260_-	TIGR04010, WcaD, putative colanic acid polymerase WcaD	NA|406aa|down_8|NZ_CP020835.1_3056234_3057452_-	TIGR04015, WcaC, colanic acid biosynthesis glycosyl transferase WcaC	NA|163aa|down_9|NZ_CP020835.1_3057448_3057937_-	PRK10191, PRK10191, putative acyl transferase; Provisional
GCF_002105735.1_ASM210573v1	NZ_CP020835	Escherichia coli strain CFSAN051542 chromosome, complete genome	7	3261281-3261425	7	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,cas8e,cas1,cas2,DEDDh,DinG,WYL,Cas14u_CAS-V,TnsE_C	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,cas8e,cas1,cas2,DEDDh,DinG,WYL,Cas14u_CAS-V,TnsE_C	NA,NA	NA|330aa|up_9|NZ_CP020835.1_3249179_3250169_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|up_8|NZ_CP020835.1_3250565_3251474_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|NZ_CP020835.1_3251665_3253687_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|NZ_CP020835.1_3254265_3254943_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|NZ_CP020835.1_3254935_3255691_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|NZ_CP020835.1_3255677_3256832_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|NZ_CP020835.1_3256828_3257869_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|NZ_CP020835.1_3257955_3259245_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|NZ_CP020835.1_3259303_3259780_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|NZ_CP020835.1_3259931_3261215_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP020835.1_3261448_3263710_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP020835.1_3263892_3265326_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP020835.1_3265401_3266454_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP020835.1_3266637_3267591_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP020835.1_3267631_3268627_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP020835.1_3268781_3269600_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP020835.1_3269600_3270659_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP020835.1_3270661_3271351_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP020835.1_3271350_3272124_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP020835.1_3272290_3272440_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_002105735.1_ASM210573v1	NZ_CP020835	Escherichia coli strain CFSAN051542 chromosome, complete genome	8	3501860-3501956	8	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,cas8e,cas1,cas2,DEDDh,DinG,WYL,Cas14u_CAS-V,TnsE_C	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,cas8e,cas1,cas2,DEDDh,DinG,WYL,Cas14u_CAS-V,TnsE_C	NA,NA	NA|231aa|up_9|NZ_CP020835.1_3493655_3494348_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|NZ_CP020835.1_3494567_3495110_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_CP020835.1_3495580_3496447_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_CP020835.1_3496448_3496661_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_CP020835.1_3496768_3497290_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_CP020835.1_3497325_3498711_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_CP020835.1_3498884_3499379_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_CP020835.1_3499381_3500104_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_CP020835.1_3500221_3500731_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_CP020835.1_3500727_3501795_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_CP020835.1_3501989_3502883_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_CP020835.1_3502879_3503695_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_CP020835.1_3503705_3504965_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_CP020835.1_3504974_3506642_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|NZ_CP020835.1_3506958_3508008_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|NZ_CP020835.1_3508029_3509265_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|NZ_CP020835.1_3509275_3510061_+	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|382aa|down_7|NZ_CP020835.1_3510288_3511434_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|NZ_CP020835.1_3511455_3512757_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|NZ_CP020835.1_3512813_3514175_-	PRK08044, PRK08044, allantoinase AllB
GCF_002105735.1_ASM210573v1	NZ_CP020835	Escherichia coli strain CFSAN051542 chromosome, complete genome	9	4052404-4052545	9	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,cas8e,cas1,cas2,DEDDh,DinG,WYL,Cas14u_CAS-V,TnsE_C	Orphan	GCTGGAGAGCAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGA	52	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,cas8e,cas1,cas2,DEDDh,DinG,WYL,Cas14u_CAS-V,TnsE_C	NA,NA	NA|96aa|up_9|NZ_CP020835.1_4041395_4041683_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_8|NZ_CP020835.1_4041679_4042966_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_7|NZ_CP020835.1_4043016_4043958_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_6|NZ_CP020835.1_4043972_4044743_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|up_5|NZ_CP020835.1_4045215_4046730_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|up_4|NZ_CP020835.1_4046760_4047903_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|up_3|NZ_CP020835.1_4048031_4049249_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|up_2|NZ_CP020835.1_4049322_4050876_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|up_1|NZ_CP020835.1_4050984_4051770_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|up_0|NZ_CP020835.1_4051775_4052366_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_0|NZ_CP020835.1_4052574_4052970_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_1|NZ_CP020835.1_4053231_4056453_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_2|NZ_CP020835.1_4056470_4057619_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_3|NZ_CP020835.1_4058074_4058896_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|305aa|down_4|NZ_CP020835.1_4059062_4059977_-	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional	NA|317aa|down_5|NZ_CP020835.1_4060042_4060993_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|150aa|down_6|NZ_CP020835.1_4060994_4061444_-	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional	NA|165aa|down_7|NZ_CP020835.1_4061568_4062063_-	PRK00376, lspA, lipoprotein signal peptidase	NA|939aa|down_8|NZ_CP020835.1_4062062_4064879_-	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|314aa|down_9|NZ_CP020835.1_4064921_4065863_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase
GCF_002105735.1_ASM210573v1	NZ_CP020835	Escherichia coli strain CFSAN051542 chromosome, complete genome	10	4859755-4859894	4	PILER-CR	no	TnsE_C	c2c9_V-U4,cas3,csa3,cas8e,cas1,cas2,DEDDh,DinG,WYL,Cas14u_CAS-V,TnsE_C	Orphan	CCCAGTTCCCAACTATTTTGTCA	23	0	0	NA	NA	NA	2	2	Orphan	c2c9_V-U4,cas3,csa3,cas8e,cas1,cas2,DEDDh,DinG,WYL,Cas14u_CAS-V,TnsE_C	NA|126aa|up_9|NZ_CP020835.1_4852350_4852728_-,NA|124aa|up_8|NZ_CP020835.1_4853137_4853509_-,NA|166aa|up_7|NZ_CP020835.1_4853569_4854067_-,NA	NA|126aa|up_9|NZ_CP020835.1_4852350_4852728_-	NA	NA|124aa|up_8|NZ_CP020835.1_4853137_4853509_-	NA	NA|166aa|up_7|NZ_CP020835.1_4853569_4854067_-	NA	NA|263aa|up_6|NZ_CP020835.1_4854142_4854931_-	PRK13746, PRK13746, aminoglycoside resistance protein; Provisional	NA|175aa|up_5|NZ_CP020835.1_4854988_4855513_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|247aa|up_4|NZ_CP020835.1_4855581_4856322_-	cd16301, IMP_DIM-like_MBL-B1, IMP-1, DIM-1, GIM-1, SIM-1, TMB-1 and related metallo-beta-lactamases, subclass B1; MBL-fold metallo-hydrolase domain	NA|403aa|up_3|NZ_CP020835.1_4856493_4857702_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|179aa|up_2|NZ_CP020835.1_4857987_4858524_+	TIGR02249, Integrase/recombinase_E2_protein	NA|109aa|up_1|NZ_CP020835.1_4858638_4858965_+	TIGR02249, Integrase/recombinase_E2_protein	NA|80aa|up_0|NZ_CP020835.1_4859152_4859392_-	pfam08849, DUF1819, Putative inner membrane protein (DUF1819)	NA|347aa|down_0|NZ_CP020835.1_4860194_4861235_+	PRK10918, PRK10918, phosphate ABC transporter substrate-binding protein PstS	NA|320aa|down_1|NZ_CP020835.1_4861321_4862281_+	PRK11275, pstC, phosphate ABC transporter permease PstC	NA|297aa|down_2|NZ_CP020835.1_4862280_4863171_+	PRK11268, pstA, phosphate ABC transporter permease PstA	NA|258aa|down_3|NZ_CP020835.1_4863353_4864127_+	PRK10744, pstB, phosphate ABC transporter ATP-binding protein PstB	NA|242aa|down_4|NZ_CP020835.1_4864141_4864867_+	PRK11115, PRK11115, phosphate signaling complex protein PhoU	NA|279aa|down_5|NZ_CP020835.1_4865152_4865989_+	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|626aa|down_6|NZ_CP020835.1_4866122_4868000_+	PRK09824, PRK09824, PTS system beta-glucoside-specific transporter subunits IIABC; Provisional	NA|465aa|down_7|NZ_CP020835.1_4868018_4869413_+	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]	NA|539aa|down_8|NZ_CP020835.1_4869498_4871115_+	COG4580, LamB, Maltoporin (phage lambda and maltose receptor) [Carbohydrate transport and metabolism]	NA|390aa|down_9|NZ_CP020835.1_4871141_4872311_+	COG2382, Fes, Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
