assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002105715.1_ASM210571v1	NZ_CP020833	Listeria monocytogenes strain CFSAN004330 chromosome, complete genome	1	557491-557710	1	CRISPRCasFinder	no	cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,DEDDh,csn2,cas9	Unclear	GTTTTAGTTACTTATTGTGAAAT	23	0	0	NA	NA	I-A	3	3	Unclear	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,DEDDh,csn2,cas9	NA|133aa|up_5|NZ_CP020833.1_552580_552979_+,NA|193aa|down_0|NZ_CP020833.1_557974_558553_+	NA|217aa|up_9|NZ_CP020833.1_548643_549294_+	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism]	NA|687aa|up_8|NZ_CP020833.1_549402_551463_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|201aa|up_7|NZ_CP020833.1_551466_552069_+	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]	NA|156aa|up_6|NZ_CP020833.1_552096_552564_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|133aa|up_5|NZ_CP020833.1_552580_552979_+	NA	NA|217aa|up_4|NZ_CP020833.1_552989_553640_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|349aa|up_3|NZ_CP020833.1_553636_554683_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|98aa|up_2|NZ_CP020833.1_554698_554992_+	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|424aa|up_1|NZ_CP020833.1_555006_556278_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|312aa|up_0|NZ_CP020833.1_556417_557353_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|193aa|down_0|NZ_CP020833.1_557974_558553_+	NA	NA|227aa|down_1|NZ_CP020833.1_558659_559340_+	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|120aa|down_2|NZ_CP020833.1_559364_559724_-	TIGR02058, lin0512_fam, conserved hypothetical protein	NA|153aa|down_3|NZ_CP020833.1_559730_560189_-	pfam12802, MarR_2, MarR family	NA|612aa|down_4|NZ_CP020833.1_560570_562406_+	NF033186, internalin_K, class 1 internalin InlK	NA|144aa|down_5|NZ_CP020833.1_562506_562938_+	pfam00582, Usp, Universal stress protein family	NA|477aa|down_6|NZ_CP020833.1_562984_564415_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|down_7|NZ_CP020833.1_564535_565351_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	cas6|241aa|down_8|NZ_CP020833.1_565703_566426_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b2|563aa|down_9|NZ_CP020833.1_566441_568130_+	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1
GCF_002105715.1_ASM210571v1	NZ_CP020833	Listeria monocytogenes strain CFSAN004330 chromosome, complete genome	2	574009-577548	1,2,1,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,DEDDh,csn2,cas9	Unclear	GTTTTAACTACTTATTATGAAATGTAAAT,GTTTTAACTACTTATTATGAAATGTAAAT,GTTTTAACTACTTATTATGAAATGTAAAT,GTTTTAACTACTTATTATGAAATGTAAAT	29,29,29,29	8	8	574038-574073|574625-574660|574753-574788|575012-575053|575343-575378|576573-576606|576701-576734|576829-576865	NZ_CP020833.1_320763-320798|NZ_CP020833.1_2662768-2662803|NZ_CP020833.1_1485417-1485382|NZ_CP020833.1_2326840-2326881|NZ_CP020833.1_897669-897704|NZ_CP020833.1_569880-569847|NZ_CP020833.1_2663870-2663837|NZ_CP020833.1_2668843-2668879	I-A:I-A:I-A:I-A	52,54,54,52	54	Unclear	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,DEDDh,csn2,cas9	NA,NA|148aa|down_5|NZ_CP020833.1_583092_583536_+,NA|492aa|down_9|NZ_CP020833.1_587844_589320_+	NA|477aa|up_9|NZ_CP020833.1_562984_564415_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|up_8|NZ_CP020833.1_564535_565351_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	cas6|241aa|up_7|NZ_CP020833.1_565703_566426_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b2|563aa|up_6|NZ_CP020833.1_566441_568130_+	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|290aa|up_5|NZ_CP020833.1_568119_568989_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas5|261aa|up_4|NZ_CP020833.1_568966_569749_+	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas3|736aa|up_3|NZ_CP020833.1_569816_572024_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas4|163aa|up_2|NZ_CP020833.1_572037_572526_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas1|330aa|up_1|NZ_CP020833.1_572538_573528_+	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas2|93aa|up_0|NZ_CP020833.1_573532_573811_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|123aa|down_0|NZ_CP020833.1_577619_577988_-	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|472aa|down_1|NZ_CP020833.1_578134_579550_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|335aa|down_2|NZ_CP020833.1_579681_580686_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|439aa|down_3|NZ_CP020833.1_580717_582034_-	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase	NA|251aa|down_4|NZ_CP020833.1_582234_582987_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|148aa|down_5|NZ_CP020833.1_583092_583536_+	NA	NA|554aa|down_6|NZ_CP020833.1_583581_585243_-	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|444aa|down_7|NZ_CP020833.1_585498_586830_+	COG5361, COG5361, Uncharacterized conserved protein [Function unknown]	NA|247aa|down_8|NZ_CP020833.1_586874_587615_-	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|492aa|down_9|NZ_CP020833.1_587844_589320_+	NA
GCF_002105715.1_ASM210571v1	NZ_CP020833	Listeria monocytogenes strain CFSAN004330 chromosome, complete genome	3	2711439-2712462	3,2,3	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas9	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,DEDDh,csn2,cas9	Type II-C,Type II-A,Type II-B	GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	36,36,36	1	1	2712067-2712096	NZ_CP020833.1_1305515-1305544	II-A,II-B:II-A,II-B:II-A,II-B	15,15,10	15	TypeII-C,TypeII-A,TypeII-B	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,DEDDh,csn2,cas9	NA|202aa|up_6|NZ_CP020833.1_2698707_2699313_+,NA|121aa|up_0|NZ_CP020833.1_2710550_2710913_-,NA|160aa|down_3|NZ_CP020833.1_2718961_2719441_-	NA|102aa|up_9|NZ_CP020833.1_2697624_2697930_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|164aa|up_8|NZ_CP020833.1_2697960_2698452_+	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|73aa|up_7|NZ_CP020833.1_2698474_2698693_+	COG4640, COG4640, Predicted membrane protein [Function unknown]	NA|202aa|up_6|NZ_CP020833.1_2698707_2699313_+	NA	NA|388aa|up_5|NZ_CP020833.1_2699375_2700539_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|343aa|up_4|NZ_CP020833.1_2706267_2707296_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|509aa|up_3|NZ_CP020833.1_2707564_2709091_+	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]	NA|284aa|up_2|NZ_CP020833.1_2709133_2709985_-	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR)	NA|141aa|up_1|NZ_CP020833.1_2710006_2710429_-	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|121aa|up_0|NZ_CP020833.1_2710550_2710913_-	NA	csn2|221aa|down_0|NZ_CP020833.1_2712590_2713253_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|114aa|down_1|NZ_CP020833.1_2713242_2713584_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas9|1335aa|down_2|NZ_CP020833.1_2714447_2718452_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|160aa|down_3|NZ_CP020833.1_2718961_2719441_-	NA	NA|131aa|down_4|NZ_CP020833.1_2719664_2720057_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|146aa|down_5|NZ_CP020833.1_2720078_2720516_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|249aa|down_6|NZ_CP020833.1_2720710_2721457_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|266aa|down_7|NZ_CP020833.1_2721462_2722260_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|289aa|down_8|NZ_CP020833.1_2722262_2723129_-	PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional	NA|280aa|down_9|NZ_CP020833.1_2723104_2723944_-	PRK13635, cbiO, energy-coupling factor ABC transporter ATP-binding protein
