assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002105695.1_ASM210569v1	NZ_CP020832	Listeria monocytogenes strain PNUSAL000096 chromosome, complete genome	1	133805-133956	1	CRISPRCasFinder	no	cas3	cas3,DinG,csa3,cas9,cas1,cas2,csn2,WYL,DEDDh,casR	Unclear	GTCTCTGGCAAAGCAAGTCTTAACTCTTCATCCGTAGGTGGTGGCGG	47	0	0	NA	NA	NA	1	1	Unclear	cas3,DinG,csa3,cas9,cas1,cas2,csn2,WYL,DEDDh,casR	NA,NA	cas3|1180aa|up_9|NZ_CP020832.1_122880_126420_-	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	NA|187aa|up_8|NZ_CP020832.1_126534_127095_-	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional	NA|195aa|up_7|NZ_CP020832.1_127201_127786_-	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|208aa|up_6|NZ_CP020832.1_127875_128499_-	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed	NA|314aa|up_5|NZ_CP020832.1_128792_129734_+	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	NA|225aa|up_4|NZ_CP020832.1_129810_130485_+	pfam08713, DNA_alkylation, DNA alkylation repair enzyme	NA|111aa|up_3|NZ_CP020832.1_130551_130884_+	PRK01119, PRK01119, putative heavy metal-binding protein	NA|154aa|up_2|NZ_CP020832.1_130934_131396_-	COG4808, COG4808, Uncharacterized protein conserved in bacteria [Function unknown]	NA|108aa|up_1|NZ_CP020832.1_131530_131854_-	pfam17606, DUF5502, Family of unknown function (DUF5502)	NA|290aa|up_0|NZ_CP020832.1_131925_132795_-	smart00770, Zn_dep_PLPC, Zinc dependent phospholipase C (alpha toxin)	NA|511aa|down_0|NZ_CP020832.1_134949_136482_-	COG3227, LasB, Zinc metalloprotease (elastase) [Amino acid transport and metabolism]	NA|530aa|down_1|NZ_CP020832.1_136812_138402_-	pfam01289, Thiol_cytolysin, Thiol-activated cytolysin	NA|318aa|down_2|NZ_CP020832.1_138643_139597_+	cd00137, PI-PLCc, Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C	NA|238aa|down_3|NZ_CP020832.1_139867_140581_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|319aa|down_4|NZ_CP020832.1_140623_141580_-	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|458aa|down_5|NZ_CP020832.1_141630_143004_-	PRK14354, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA|103aa|down_6|NZ_CP020832.1_143390_143699_-	PRK13259, PRK13259, septation regulator SpoVG	NA|103aa|down_7|NZ_CP020832.1_143818_144127_-	PRK13259, PRK13259, septation regulator SpoVG	NA|403aa|down_8|NZ_CP020832.1_144811_146020_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|231aa|down_9|NZ_CP020832.1_146016_146709_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein
GCF_002105695.1_ASM210569v1	NZ_CP020832	Listeria monocytogenes strain PNUSAL000096 chromosome, complete genome	2	604357-605647	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas9,cas1,cas2,csn2	cas3,DinG,csa3,cas9,cas1,cas2,csn2,WYL,DEDDh,casR	Type II-B,Type II-A,Type II-C	GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC,GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC,GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	36,36,36	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	18,19,19	19	TypeII-B,TypeII-A,TypeII-C	cas3,DinG,csa3,cas9,cas1,cas2,csn2,WYL,DEDDh,casR	NA|160aa|up_4|NZ_CP020832.1_597377_597857_+,NA|121aa|down_0|NZ_CP020832.1_606172_606535_+	NA|289aa|up_9|NZ_CP020832.1_593727_594594_+	PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional	NA|266aa|up_8|NZ_CP020832.1_594596_595394_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|249aa|up_7|NZ_CP020832.1_595399_596146_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|146aa|up_6|NZ_CP020832.1_596340_596778_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|131aa|up_5|NZ_CP020832.1_596799_597192_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|160aa|up_4|NZ_CP020832.1_597377_597857_+	NA	cas9|1335aa|up_3|NZ_CP020832.1_598366_602371_+	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	cas1|289aa|up_2|NZ_CP020832.1_602371_603238_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|114aa|up_1|NZ_CP020832.1_603234_603576_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|221aa|up_0|NZ_CP020832.1_603565_604228_+	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	NA|121aa|down_0|NZ_CP020832.1_606172_606535_+	NA	NA|141aa|down_1|NZ_CP020832.1_606656_607079_+	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|284aa|down_2|NZ_CP020832.1_607100_607952_+	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR)	NA|509aa|down_3|NZ_CP020832.1_607993_609520_-	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]	NA|343aa|down_4|NZ_CP020832.1_609788_610817_+	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|296aa|down_5|NZ_CP020832.1_616608_617496_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|494aa|down_6|NZ_CP020832.1_617596_619078_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|281aa|down_7|NZ_CP020832.1_619125_619968_-	COG1912, COG1912, Uncharacterized conserved protein [Function unknown]	NA|996aa|down_8|NZ_CP020832.1_620466_623454_+	COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only]	NA|159aa|down_9|NZ_CP020832.1_623453_623930_+	COG2427, COG2427, Uncharacterized conserved protein [Function unknown]
GCF_002105695.1_ASM210569v1	NZ_CP020832	Listeria monocytogenes strain PNUSAL000096 chromosome, complete genome	3	744126-744282	3	CRISPRCasFinder	no		cas3,DinG,csa3,cas9,cas1,cas2,csn2,WYL,DEDDh,casR	Orphan	ATTTAGGTAAATTTTGAAAATCAGG	25	0	0	NA	NA	NA	2	2	Orphan	cas3,DinG,csa3,cas9,cas1,cas2,csn2,WYL,DEDDh,casR	NA,NA|133aa|down_4|NZ_CP020832.1_749505_749904_+	NA|166aa|up_9|NZ_CP020832.1_732609_733107_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|492aa|up_8|NZ_CP020832.1_733192_734668_+	sd00006, TPR, Tetratricopeptide repeat	NA|320aa|up_7|NZ_CP020832.1_734746_735706_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|328aa|up_6|NZ_CP020832.1_735824_736808_+	COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]	NA|354aa|up_5|NZ_CP020832.1_736824_737886_+	cd09019, galactose_mutarotase_like, galactose mutarotase_like	NA|577aa|up_4|NZ_CP020832.1_737927_739658_+	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|292aa|up_3|NZ_CP020832.1_739765_740641_+	PRK05416, PRK05416, RNase adapter RapZ	NA|323aa|up_2|NZ_CP020832.1_740642_741611_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|324aa|up_1|NZ_CP020832.1_741618_742590_+	COG1481, COG1481, Uncharacterized protein conserved in bacteria [Function unknown]	NA|339aa|up_0|NZ_CP020832.1_742616_743633_+	PRK13523, PRK13523, NADPH dehydrogenase NamA; Provisional	NA|464aa|down_0|NZ_CP020832.1_745069_746461_+	TIGR00909, putative_amino_acid_transporter, amino acid transporter	NA|199aa|down_1|NZ_CP020832.1_746506_747103_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|479aa|down_2|NZ_CP020832.1_747259_748696_+	COG3397, COG3397, Uncharacterized protein conserved in bacteria [Function unknown]	NA|112aa|down_3|NZ_CP020832.1_748943_749279_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|133aa|down_4|NZ_CP020832.1_749505_749904_+	NA	NA|203aa|down_5|NZ_CP020832.1_749920_750529_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|745aa|down_6|NZ_CP020832.1_750535_752770_+	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only]	NA|309aa|down_7|NZ_CP020832.1_752848_753775_+	pfam01244, Peptidase_M19, Membrane dipeptidase (Peptidase family M19)	NA|448aa|down_8|NZ_CP020832.1_753933_755277_+	TIGR02395, RNA_polymerase_sigma-54_factor, RNA polymerase sigma-54 factor	NA|349aa|down_9|NZ_CP020832.1_755718_756765_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
GCF_002105695.1_ASM210569v1	NZ_CP020832	Listeria monocytogenes strain PNUSAL000096 chromosome, complete genome	4	2722211-2722825	2,4	PILER-CR,CRISPRCasFinder	no		cas3,DinG,csa3,cas9,cas1,cas2,csn2,WYL,DEDDh,casR	Orphan	ATTTACATTTCACAATAAGTAACTAAAAC,ATTTACATTTCACAATAAGTAACTAAAAC	29,29	0	0	NA	NA	I-A:I-A	9,9	9	Orphan	cas3,DinG,csa3,cas9,cas1,cas2,csn2,WYL,DEDDh,casR	NA|193aa|up_0|NZ_CP020832.1_2721240_2721819_-,NA|133aa|down_5|NZ_CP020832.1_2727436_2727835_-	NA|472aa|up_9|NZ_CP020832.1_2712230_2713646_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|123aa|up_8|NZ_CP020832.1_2713792_2714161_+	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|272aa|up_7|NZ_CP020832.1_2714441_2715257_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|477aa|up_6|NZ_CP020832.1_2715377_2716808_+	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|144aa|up_5|NZ_CP020832.1_2716854_2717286_-	pfam00582, Usp, Universal stress protein family	NA|612aa|up_4|NZ_CP020832.1_2717386_2719222_-	NF033186, internalin_K, class 1 internalin InlK	NA|153aa|up_3|NZ_CP020832.1_2719603_2720062_+	pfam12802, MarR_2, MarR family	NA|120aa|up_2|NZ_CP020832.1_2720068_2720428_+	TIGR02058, lin0512_fam, conserved hypothetical protein	NA|227aa|up_1|NZ_CP020832.1_2720452_2721133_-	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|193aa|up_0|NZ_CP020832.1_2721240_2721819_-	NA	NA|312aa|down_0|NZ_CP020832.1_2723062_2723998_-	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|424aa|down_1|NZ_CP020832.1_2724137_2725409_-	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|98aa|down_2|NZ_CP020832.1_2725423_2725717_-	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|349aa|down_3|NZ_CP020832.1_2725732_2726779_-	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|217aa|down_4|NZ_CP020832.1_2726775_2727426_-	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|133aa|down_5|NZ_CP020832.1_2727436_2727835_-	NA	NA|156aa|down_6|NZ_CP020832.1_2727851_2728319_-	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|201aa|down_7|NZ_CP020832.1_2728346_2728949_-	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]	NA|687aa|down_8|NZ_CP020832.1_2728952_2731013_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|217aa|down_9|NZ_CP020832.1_2731121_2731772_-	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism]
