The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP020832	Listeria monocytogenes strain PNUSAL000096 chromosome, complete genome	2897335	215941	222466	2897335	tail	Streptococcus_pyogenes_phage(33.33%)	10	NA	NA
WP_009911828.1|215941_216760_-|tail	phage tail family protein	tail	A0A060AFE1	Staphylococcus_phage	35.0	7.2e-39
WP_031665466.1|216756_218625_-	membrane protein	NA	A0A097PAU2	Streptococcus_pyogenes_phage	45.8	3.5e-20
WP_072217178.1|218611_219016_-	phenylalanine racemase	NA	NA	NA	NA	NA
WP_003740132.1|219057_219360_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003721744.1|219407_219920_-|tail	phage major tail protein, TP901-1 family	tail	A0A097PBF4	Streptococcus_pyogenes_phage	62.7	1.2e-47
WP_009930418.1|219932_220322_-	DUF5072 domain-containing protein	NA	NA	NA	NA	NA
WP_003732220.1|220599_221016_-	hypothetical protein	NA	A8ASQ1	Listeria_phage	39.3	1.3e-20
WP_003732219.1|221027_221456_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003721740.1|221672_222008_+	helix-turn-helix transcriptional regulator	NA	A0A2H4JAR9	uncultured_Caudovirales_phage	52.5	4.0e-20
WP_003721739.1|222013_222466_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A059T7S0	Listeria_phage	47.9	4.0e-31
>prophage 2
NZ_CP020832	Listeria monocytogenes strain PNUSAL000096 chromosome, complete genome	2897335	734746	742590	2897335		Streptococcus_phage(50.0%)	7	NA	NA
WP_003722610.1|734746_735706_+	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	53.7	2.0e-88
WP_014601137.1|735824_736808_+	UDP-glucose 4-epimerase GalE	NA	A0A1V0SG19	Hokovirus	37.2	1.6e-48
WP_077421975.1|736824_737886_+	galactose mutarotase	NA	NA	NA	NA	NA
WP_012952017.1|737927_739658_+	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	54.0	3.0e-175
WP_010990001.1|739765_740641_+	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.7	3.2e-08
WP_003722605.1|740642_741611_+	YvcK family protein	NA	A1IMD5	Streptococcus_phage	43.3	6.7e-68
WP_003722604.1|741618_742590_+	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	39.4	5.2e-52
>prophage 3
NZ_CP020832	Listeria monocytogenes strain PNUSAL000096 chromosome, complete genome	2897335	1401668	1409954	2897335		Synechococcus_phage(33.33%)	8	NA	NA
WP_003729814.1|1401668_1402961_+	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	33.0	2.5e-17
WP_014931516.1|1403041_1403755_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	37.8	8.8e-41
WP_003722248.1|1403766_1404012_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_003733240.1|1404015_1404699_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_039384720.1|1404691_1406911_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	41.1	6.5e-159
WP_003722245.1|1406895_1408323_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	34.6	1.1e-53
WP_031665593.1|1408341_1409391_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	44.4	9.2e-63
WP_033921148.1|1409387_1409954_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.9	7.0e-25
>prophage 4
NZ_CP020832	Listeria monocytogenes strain PNUSAL000096 chromosome, complete genome	2897335	1899222	1960411	2897335	tRNA,protease	Streptococcus_phage(16.67%)	59	NA	NA
WP_010989734.1|1899222_1900929_-|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003723454.1|1900968_1902231_-|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010989733.1|1902244_1903387_-	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_003732813.1|1903401_1904190_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003732812.1|1904203_1904962_-	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	42.1	4.4e-22
WP_003723450.1|1905192_1905750_-	ribosome recycling factor	NA	NA	NA	NA	NA
WP_003723449.1|1905749_1906478_-	UMP kinase	NA	NA	NA	NA	NA
WP_003723448.1|1906770_1907145_+	hypothetical protein	NA	NA	NA	NA	NA
WP_072217143.1|1907122_1908328_+	helicase SNF2	NA	L0P6E9	Lactobacillus_phage	47.1	3.7e-92
WP_003723446.1|1908317_1909622_+	DUF3440 domain-containing protein	NA	A0A220GKF8	Streptococcus_phage	52.1	9.5e-134
WP_003723445.1|1909631_1910138_+	ParB-like nuclease domain-containing protein	NA	A0A220GKT8	Streptococcus_phage	66.7	4.0e-56
WP_003723444.1|1910159_1910891_+	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	59.1	1.2e-80
WP_003723443.1|1910909_1911752_+	DUF2785 domain-containing protein	NA	NA	NA	NA	NA
WP_003723442.1|1911802_1912042_-	YneF family protein	NA	NA	NA	NA	NA
WP_031645059.1|1912262_1914257_-	transketolase	NA	NA	NA	NA	NA
WP_014601966.1|1914403_1914631_-	DUF896 domain-containing protein	NA	NA	NA	NA	NA
WP_003723439.1|1914722_1915052_-	cell division suppressor protein YneA	NA	NA	NA	NA	NA
WP_003723438.1|1915209_1915824_+	transcriptional repressor LexA	NA	A0A1B2APZ1	Phage_Wrath	62.1	9.3e-15
WP_010989729.1|1915853_1916375_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003723436.1|1916418_1917714_-	arsenical efflux pump membrane protein ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	61.6	1.8e-145
WP_003723435.1|1917857_1919192_-	type I glutamate--ammonia ligase	NA	A0A1V0SJ53	Klosneuvirus	26.4	2.0e-06
WP_003719570.1|1919262_1919631_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010989728.1|1919834_1921061_-	methionine gamma-lyase family protein	NA	NA	NA	NA	NA
WP_022741839.1|1921053_1922277_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003719566.1|1922387_1922621_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_012951578.1|1922743_1923661_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_033920299.1|1923786_1925463_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_009925395.1|1925695_1926394_-	glycerophosphodiester phosphodiesterase	NA	A0A0S2MYI4	Enterococcus_phage	32.4	9.9e-13
WP_012951576.1|1926606_1928475_+	acetyltransferase	NA	B5WZU0	Pseudomonas_phage	31.9	6.5e-43
WP_085337854.1|1928508_1930305_-	class 1 internalin InlK	NA	NA	NA	NA	NA
WP_085337855.1|1930636_1932370_-	LapB repeat-containing protein	NA	NA	NA	NA	NA
WP_009913867.1|1932696_1933164_-	S-ribosylhomocysteine lyase	NA	NA	NA	NA	NA
WP_023548882.1|1933246_1935706_-	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	31.6	4.7e-102
WP_003723731.1|1935702_1937670_-	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	42.5	6.7e-123
WP_003732802.1|1937850_1938258_-	CoA-binding protein	NA	NA	NA	NA	NA
WP_003724132.1|1938415_1939012_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_033920305.1|1939053_1939926_-	aldose 1-epimerase family protein	NA	NA	NA	NA	NA
WP_003724130.1|1939928_1940240_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012951573.1|1940262_1940682_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003726695.1|1940784_1941564_-	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA	NA
WP_085337856.1|1941584_1942994_-|protease	ATP-dependent protease ATPase subunit HslU	protease	W6AS21	Erwinia_phage	28.0	3.7e-43
WP_003724001.1|1943007_1943547_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_009911635.1|1943567_1944470_-	tyrosine recombinase XerC	NA	A0A097EYL9	Mycobacterium_phage	28.6	1.2e-13
WP_009924616.1|1944752_1946057_-|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	tRNA	NA	NA	NA	NA
WP_009924617.1|1946119_1948198_-	type I DNA topoisomerase	NA	A0A1V0SB35	Catovirus	37.7	1.4e-107
WP_003723892.1|1948469_1949330_-	DNA-protecting protein DprA	NA	NA	NA	NA	NA
WP_003723891.1|1949463_1950249_-	ribonuclease HII	NA	G4YAY0	Emiliania_huxleyi_virus	39.2	3.0e-26
WP_003723890.1|1950245_1951109_-	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA	NA
WP_003723889.1|1951118_1951661_-	type I signal peptidase SipZ	NA	NA	NA	NA	NA
WP_009924619.1|1951762_1952332_-	type I signal peptidase SipY	NA	NA	NA	NA	NA
WP_003723887.1|1952366_1952933_-	type I signal peptidase SipX	NA	NA	NA	NA	NA
WP_033920310.1|1953051_1954311_-|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	63.4	6.1e-146
WP_003723884.1|1954496_1955780_-	trigger factor	NA	NA	NA	NA	NA
WP_003732796.1|1955894_1956833_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003732795.1|1957094_1957760_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010989719.1|1957777_1958311_-|protease	matrixin family metalloprotease	protease	NA	NA	NA	NA
WP_003727524.1|1958429_1958645_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003723563.1|1958795_1959191_+	helix-turn-helix transcriptional regulator	NA	A9D9J6	Lactobacillus_prophage	57.4	1.3e-14
WP_031671806.1|1959271_1960411_+|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
>prophage 5
NZ_CP020832	Listeria monocytogenes strain PNUSAL000096 chromosome, complete genome	2897335	1979549	2022582	2897335	portal,integrase,holin,tail,capsid,protease	Listeria_phage(89.13%)	52	1979267:1979283	2022683:2022699
1979267:1979283	attL	ACGTCCTGAGAGGGATT	NA	NA	NA	NA
WP_031664868.1|1979549_1979783_-	hypothetical protein	NA	A8ATC5	Listeria_phage	89.6	1.1e-32
WP_026749930.1|1980223_1980409_+	hypothetical protein	NA	A0A059T7Z0	Listeria_phage	89.7	5.4e-19
WP_026749929.1|1980804_1981314_-	hypothetical protein	NA	NA	NA	NA	NA
WP_077914485.1|1981918_1982773_-	N-acetylmuramoyl-L-alanine amidase	NA	P89923	Bacillus_phage	50.6	8.1e-33
WP_014929558.1|1982769_1983051_-|holin	phage holin	holin	A8ATW3	Listeria_phage	98.9	6.7e-45
WP_003733957.1|1983050_1983356_-	hypothetical protein	NA	A0A059T5E6	Listeria_phage	100.0	1.8e-43
WP_026749928.1|1983406_1984501_-	hypothetical protein	NA	A0A059T7R4	Listeria_phage	84.9	1.9e-175
WP_026749927.1|1984490_1986785_-	hypothetical protein	NA	A0A059T7Y6	Listeria_phage	99.2	0.0e+00
WP_026749926.1|1986797_1988447_-|tail	phage tail protein	tail	A0A059T682	Listeria_phage	99.3	0.0e+00
WP_026749925.1|1988443_1993354_-|tail	phage tail tape measure protein	tail	A0A059T5F4	Listeria_phage	96.0	0.0e+00
WP_025370591.1|1993569_1993902_-	hypothetical protein	NA	A0A059T7R2	Listeria_phage	97.3	8.7e-52
WP_025370590.1|1993972_1994560_-|tail	phage tail protein	tail	A0A059T7Y4	Listeria_phage	99.0	1.3e-106
WP_026749924.1|1994580_1994964_-	hypothetical protein	NA	A0A059T681	Listeria_phage	96.9	2.1e-65
WP_026747164.1|1994960_1995362_-	hypothetical protein	NA	A8ATA2	Listeria_phage	97.0	5.2e-67
WP_025370587.1|1995358_1995724_-	hypothetical protein	NA	A0A059T6F2	Listeria_phage	99.2	2.4e-63
WP_014930914.1|1995707_1996007_-	hypothetical protein	NA	A0A059T7R0	Listeria_phage	100.0	5.3e-48
WP_014930913.1|1996193_1997345_-|capsid	phage major capsid protein	capsid	A0A059T678	Listeria_phage	100.0	6.3e-214
WP_026749923.1|1997371_1998169_-|protease	Clp protease ClpP	protease	A0A059T5F2	Listeria_phage	99.6	6.2e-144
WP_026749922.1|1998165_1999296_-|portal	phage portal protein	portal	A0A059T6F0	Listeria_phage	99.2	6.1e-214
WP_009917707.1|1999346_1999736_+	DUF2513 domain-containing protein	NA	A0A1Q1PVT8	Staphylococcus_phage	39.8	3.7e-17
WP_012951543.1|2001384_2001741_-	hypothetical protein	NA	A0A059T7Y1	Listeria_phage	98.0	2.0e-46
WP_031664877.1|2001789_2002104_-	HNH endonuclease	NA	A8ATF8	Listeria_phage	97.1	3.2e-56
WP_031664879.1|2002103_2002430_-	hypothetical protein	NA	A0A059T5G5	Listeria_phage	93.5	9.5e-51
WP_031664880.1|2002459_2003071_-	hypothetical protein	NA	A0A1Q1PW40	Staphylococcus_phage	42.8	6.0e-22
WP_077323710.1|2003096_2004044_-	DUF4868 domain-containing protein	NA	A0A1Q1PW39	Staphylococcus_phage	33.0	7.8e-45
WP_031664885.1|2004264_2004690_-	DUF722 domain-containing protein	NA	A0A059T6H4	Listeria_phage	99.3	1.8e-73
WP_031664887.1|2004690_2005221_-	DUF3310 domain-containing protein	NA	A0A059T7T5	Listeria_phage	77.3	1.3e-73
WP_033920321.1|2005331_2005601_-	hypothetical protein	NA	W0GBM0	Listeria_phage	72.2	3.1e-15
WP_031664889.1|2005597_2005918_-	VRR-NUC domain-containing protein	NA	Q8W5V6	Listeria_phage	97.2	1.2e-53
WP_026749917.1|2006058_2008332_-	DNA primase	NA	R4IBW2	Listeria_phage	74.3	0.0e+00
WP_026749915.1|2008871_2010128_-	DEAD/DEAH box helicase	NA	Q8W5V9	Listeria_phage	90.0	5.4e-219
WP_003743935.1|2010191_2010881_-	AAA family ATPase	NA	A0A059T7T3	Listeria_phage	100.0	2.6e-130
WP_033920325.1|2010893_2011373_-	siphovirus Gp157 family protein	NA	A0A059T803	Listeria_phage	98.7	1.2e-78
WP_014929534.1|2011374_2011758_-	hypothetical protein	NA	A0A059T6A2	Listeria_phage	99.2	5.5e-66
WP_031664897.1|2012031_2012592_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031664899.1|2012641_2012857_-	hypothetical protein	NA	A0A059T7T1	Listeria_phage	93.7	2.8e-27
WP_014930899.1|2013173_2013401_-	DUF3850 domain-containing protein	NA	A0A059T7N3	Listeria_phage	84.0	4.6e-28
WP_003731703.1|2013790_2013967_-	hypothetical protein	NA	A0A076G7F4	Listeria_phage	87.9	1.9e-21
WP_031664904.1|2013963_2014179_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031664906.1|2014282_2014816_-	pentapeptide repeat-containing protein	NA	A0A060AFJ6	Listeria_phage	85.2	2.2e-44
WP_031664908.1|2015196_2015640_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031664910.1|2015642_2016236_-	DUF1642 domain-containing protein	NA	A8ATD8	Listeria_phage	61.7	3.1e-60
WP_031664911.1|2016232_2017210_-	DNA cytosine methyltransferase	NA	H7BVD3	unidentified_phage	37.5	9.2e-49
WP_026749905.1|2017227_2017482_-	hypothetical protein	NA	A0A059T6G3	Listeria_phage	91.5	4.3e-35
WP_009929539.1|2018005_2018191_-	hypothetical protein	NA	A0A059T7Z3	Listeria_phage	96.7	1.7e-28
WP_015987310.1|2018193_2018436_-	hypothetical protein	NA	A8ATD2	Listeria_phage	100.0	1.4e-43
WP_009929536.1|2018437_2018641_-	helix-turn-helix transcriptional regulator	NA	A0A059T5F8	Listeria_phage	100.0	3.1e-28
WP_009929535.1|2018655_2018979_-	hypothetical protein	NA	NA	NA	NA	NA
WP_026749904.1|2019783_2020107_+	helix-turn-helix transcriptional regulator	NA	A0A059T6G1	Listeria_phage	71.0	8.5e-36
WP_026749903.1|2020123_2020576_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A059T7S0	Listeria_phage	96.0	8.5e-82
WP_012951517.1|2020627_2021284_+	DUF4352 domain-containing protein	NA	NA	NA	NA	NA
WP_026749902.1|2021427_2022582_+|integrase	site-specific integrase	integrase	A8ATC7	Listeria_phage	97.1	4.1e-213
2022683:2022699	attR	ACGTCCTGAGAGGGATT	NA	NA	NA	NA
>prophage 6
NZ_CP020832	Listeria monocytogenes strain PNUSAL000096 chromosome, complete genome	2897335	2136435	2143856	2897335		Hokovirus(33.33%)	8	NA	NA
WP_077916705.1|2136435_2137992_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	28.6	1.3e-17
WP_003730540.1|2138120_2138525_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_039384194.1|2138584_2138893_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_039384191.1|2138905_2139730_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.6	2.2e-67
WP_014931339.1|2139741_2141232_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	49.7	7.3e-114
WP_020246559.1|2141439_2142453_-	glycosyltransferase	NA	A0A1V0SAH6	Catovirus	32.0	7.9e-11
WP_014600722.1|2142467_2143451_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	35.3	3.1e-12
WP_003721506.1|2143472_2143856_-	glycerol-3-phosphate cytidylyltransferase	NA	A0A1V0SGE7	Hokovirus	40.7	1.4e-16
