assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002105635.1_ASM210563v1	NZ_CP020828	Listeria monocytogenes strain CFSAN022990 chromosome, complete genome	1	209958-210109	1	CRISPRCasFinder	no	cas3	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh	Unclear	CCGCCACCACCTACGGATGAAGAGTTAAGACTTGCTTTGCCAGAGAC	47	0	0	NA	NA	NA	1	1	Unclear	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh	NA,NA	NA|231aa|up_9|NZ_CP020828.1_197205_197898_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|403aa|up_8|NZ_CP020828.1_197894_199103_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|103aa|up_7|NZ_CP020828.1_199787_200096_+	PRK13259, PRK13259, septation regulator SpoVG	NA|103aa|up_6|NZ_CP020828.1_200215_200524_+	PRK13259, PRK13259, septation regulator SpoVG	NA|458aa|up_5|NZ_CP020828.1_200909_202283_+	PRK14354, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA|319aa|up_4|NZ_CP020828.1_202333_203290_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|238aa|up_3|NZ_CP020828.1_203332_204046_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|318aa|up_2|NZ_CP020828.1_204316_205270_-	cd00137, PI-PLCc, Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C	NA|530aa|up_1|NZ_CP020828.1_205511_207101_+	pfam01289, Thiol_cytolysin, Thiol-activated cytolysin	NA|511aa|up_0|NZ_CP020828.1_207431_208964_+	COG3227, LasB, Zinc metalloprotease (elastase) [Amino acid transport and metabolism]	NA|290aa|down_0|NZ_CP020828.1_211117_211987_+	smart00770, Zn_dep_PLPC, Zinc dependent phospholipase C (alpha toxin)	NA|108aa|down_1|NZ_CP020828.1_212058_212382_+	pfam17606, DUF5502, Family of unknown function (DUF5502)	NA|154aa|down_2|NZ_CP020828.1_212516_212978_+	COG4808, COG4808, Uncharacterized protein conserved in bacteria [Function unknown]	NA|111aa|down_3|NZ_CP020828.1_213028_213361_-	PRK01119, PRK01119, putative heavy metal-binding protein	NA|225aa|down_4|NZ_CP020828.1_213427_214102_-	pfam08713, DNA_alkylation, DNA alkylation repair enzyme	NA|314aa|down_5|NZ_CP020828.1_214178_215120_-	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	NA|208aa|down_6|NZ_CP020828.1_215413_216037_+	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed	NA|195aa|down_7|NZ_CP020828.1_216125_216710_+	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|187aa|down_8|NZ_CP020828.1_216816_217377_+	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional	cas3|1180aa|down_9|NZ_CP020828.1_217491_221031_+	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
GCF_002105635.1_ASM210563v1	NZ_CP020828	Listeria monocytogenes strain CFSAN022990 chromosome, complete genome	2	523546-524130	1	CRT	no		csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh	Orphan	GATGTAAGTAATTTTGATACNAGTTCNGTAACTNATATG	39	1	1	523975-524013	NZ_CP020828.1_521770-521808	NA	7	7	Orphan	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh	NA,NA|158aa|down_0|NZ_CP020828.1_525023_525497_+,NA|162aa|down_1|NZ_CP020828.1_525516_526002_+,NA|123aa|down_4|NZ_CP020828.1_527461_527830_+,NA|91aa|down_6|NZ_CP020828.1_529224_529497_+,NA|116aa|down_7|NZ_CP020828.1_529524_529872_+,NA|81aa|down_8|NZ_CP020828.1_530275_530518_+	NA|222aa|up_9|NZ_CP020828.1_506621_507287_-	COG3619, COG3619, Predicted membrane protein [Function unknown]	NA|252aa|up_8|NZ_CP020828.1_507307_508063_-	pfam16160, DUF4866, Domain of unknown function (DUF4866)	NA|720aa|up_7|NZ_CP020828.1_508180_510340_-	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|383aa|up_6|NZ_CP020828.1_510336_511485_-	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|316aa|up_5|NZ_CP020828.1_511489_512437_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|532aa|up_4|NZ_CP020828.1_512592_514188_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|428aa|up_3|NZ_CP020828.1_514321_515605_+	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain	NA|367aa|up_2|NZ_CP020828.1_515605_516706_+	COG3535, COG3535, Uncharacterized conserved protein [Function unknown]	NA|517aa|up_1|NZ_CP020828.1_516698_518249_+	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|513aa|up_0|NZ_CP020828.1_518895_520434_+	pfam05043, Mga, Mga helix-turn-helix domain	NA|158aa|down_0|NZ_CP020828.1_525023_525497_+	NA	NA|162aa|down_1|NZ_CP020828.1_525516_526002_+	NA	NA|102aa|down_2|NZ_CP020828.1_526029_526335_+	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|95aa|down_3|NZ_CP020828.1_527176_527461_+	pfam11328, DUF3130, Protein of unknown function (DUF3130	NA|123aa|down_4|NZ_CP020828.1_527461_527830_+	NA	NA|459aa|down_5|NZ_CP020828.1_527826_529203_+	pfam04740, LXG, LXG domain of WXG superfamily	NA|91aa|down_6|NZ_CP020828.1_529224_529497_+	NA	NA|116aa|down_7|NZ_CP020828.1_529524_529872_+	NA	NA|81aa|down_8|NZ_CP020828.1_530275_530518_+	NA	NA|326aa|down_9|NZ_CP020828.1_530600_531578_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]
GCF_002105635.1_ASM210563v1	NZ_CP020828	Listeria monocytogenes strain CFSAN022990 chromosome, complete genome	3	561972-562456	1,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas6,cas8b2,cas7,cas5,cas3,cas2	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh	Unclear	GTTTTAGTTACTTATTGTGAAATGTAAAT,GTTTTAGTTACTTATTGTGAAATGTAAAT,GTTTTAGTTACTTATTGTGAAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	7,7,7	7	Unclear	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh	NA|133aa|up_5|NZ_CP020828.1_556961_557360_+,NA|193aa|down_0|NZ_CP020828.1_562847_563426_+	NA|217aa|up_9|NZ_CP020828.1_553024_553675_+	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism]	NA|687aa|up_8|NZ_CP020828.1_553783_555844_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|201aa|up_7|NZ_CP020828.1_555847_556450_+	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]	NA|156aa|up_6|NZ_CP020828.1_556477_556945_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|133aa|up_5|NZ_CP020828.1_556961_557360_+	NA	NA|217aa|up_4|NZ_CP020828.1_557370_558021_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|349aa|up_3|NZ_CP020828.1_558017_559064_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|98aa|up_2|NZ_CP020828.1_559079_559373_+	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|424aa|up_1|NZ_CP020828.1_559387_560659_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|312aa|up_0|NZ_CP020828.1_560798_561734_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|193aa|down_0|NZ_CP020828.1_562847_563426_+	NA	NA|227aa|down_1|NZ_CP020828.1_563533_564214_+	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|120aa|down_2|NZ_CP020828.1_564238_564598_-	TIGR02058, lin0512_fam, conserved hypothetical protein	NA|153aa|down_3|NZ_CP020828.1_564604_565063_-	pfam12802, MarR_2, MarR family	NA|612aa|down_4|NZ_CP020828.1_565444_567280_+	NF033186, internalin_K, class 1 internalin InlK	NA|144aa|down_5|NZ_CP020828.1_567380_567812_+	pfam00582, Usp, Universal stress protein family	NA|477aa|down_6|NZ_CP020828.1_567858_569289_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|down_7|NZ_CP020828.1_569409_570225_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	cas6|241aa|down_8|NZ_CP020828.1_570577_571300_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas6|242aa|down_9|NZ_CP020828.1_571774_572500_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6
GCF_002105635.1_ASM210563v1	NZ_CP020828	Listeria monocytogenes strain CFSAN022990 chromosome, complete genome	4	578859-581087	2,3,3	PILER-CR,CRISPRCasFinder,CRT	no	cas6,cas8b2,cas7,cas5,cas3,cas2	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh	Unclear	GTTTTAACTACTTATTATGAAATGTAAAT,GTTTTAACTACTTATTATGAAATGTAAAT,GTTTTAACTACTTATTATGAAATGTAAAT	29,29,29	1	1	580509-580542	NZ_CP020828.1_575960-575927	I-A:I-A:I-A	33,34,34	34	Unclear	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh	NA,NA|148aa|down_5|NZ_CP020828.1_586633_587077_+,NA|492aa|down_8|NZ_CP020828.1_591386_592862_+	NA|144aa|up_9|NZ_CP020828.1_567380_567812_+	pfam00582, Usp, Universal stress protein family	NA|477aa|up_8|NZ_CP020828.1_567858_569289_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|up_7|NZ_CP020828.1_569409_570225_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	cas6|241aa|up_6|NZ_CP020828.1_570577_571300_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas6|242aa|up_5|NZ_CP020828.1_571774_572500_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b2|565aa|up_4|NZ_CP020828.1_572515_574210_+	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|290aa|up_3|NZ_CP020828.1_574199_575069_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas5|261aa|up_2|NZ_CP020828.1_575046_575829_+	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas3|728aa|up_1|NZ_CP020828.1_575896_578080_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas2|93aa|up_0|NZ_CP020828.1_578382_578661_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|123aa|down_0|NZ_CP020828.1_581158_581527_-	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|472aa|down_1|NZ_CP020828.1_581673_583089_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|335aa|down_2|NZ_CP020828.1_583220_584225_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|439aa|down_3|NZ_CP020828.1_584256_585573_-	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase	NA|251aa|down_4|NZ_CP020828.1_585774_586527_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|148aa|down_5|NZ_CP020828.1_586633_587077_+	NA	NA|444aa|down_6|NZ_CP020828.1_589039_590371_+	COG5361, COG5361, Uncharacterized conserved protein [Function unknown]	NA|247aa|down_7|NZ_CP020828.1_590416_591157_-	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|492aa|down_8|NZ_CP020828.1_591386_592862_+	NA	NA|499aa|down_9|NZ_CP020828.1_592854_594351_+	COG5298, COG5298, Uncharacterized protein conserved in bacteria [Function unknown]
