assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002105615.1_ASM210561v1	NZ_CP020827	Listeria monocytogenes strain CFSAN028538 chromosome, complete genome	1	526529-527207	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,RT,DEDDh	Unclear	GTTTTAGTTACTTATTGTGAAATGTAAAT,GTTTTAGTTACTTATTGTGAAATGTAAAT,GTTTTAGTTACTTATTGTGAAATGTAAAT	29,29,29	2	2	527015-527049|527079-527114	NZ_CP020827.1_1291048-1291082|NZ_CP020827.1_1271511-1271546	I-A:I-A:I-A	10,10,10	10	Unclear	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,RT,DEDDh	NA|133aa|up_5|NZ_CP020827.1_521518_521917_+,NA|193aa|down_0|NZ_CP020827.1_527598_528177_+	NA|217aa|up_9|NZ_CP020827.1_517581_518232_+	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism]	NA|687aa|up_8|NZ_CP020827.1_518340_520401_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|201aa|up_7|NZ_CP020827.1_520404_521007_+	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]	NA|156aa|up_6|NZ_CP020827.1_521034_521502_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|133aa|up_5|NZ_CP020827.1_521518_521917_+	NA	NA|217aa|up_4|NZ_CP020827.1_521927_522578_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|349aa|up_3|NZ_CP020827.1_522574_523621_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|98aa|up_2|NZ_CP020827.1_523636_523930_+	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|424aa|up_1|NZ_CP020827.1_523944_525216_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|312aa|up_0|NZ_CP020827.1_525355_526291_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|193aa|down_0|NZ_CP020827.1_527598_528177_+	NA	NA|227aa|down_1|NZ_CP020827.1_528283_528964_+	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|120aa|down_2|NZ_CP020827.1_528988_529348_-	TIGR02058, lin0512_fam, conserved hypothetical protein	NA|153aa|down_3|NZ_CP020827.1_529354_529813_-	pfam12802, MarR_2, MarR family	NA|612aa|down_4|NZ_CP020827.1_530194_532030_+	NF033186, internalin_K, class 1 internalin InlK	NA|144aa|down_5|NZ_CP020827.1_532130_532562_+	pfam00582, Usp, Universal stress protein family	NA|477aa|down_6|NZ_CP020827.1_532608_534039_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|down_7|NZ_CP020827.1_534159_534975_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	cas6|241aa|down_8|NZ_CP020827.1_535327_536050_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b2|563aa|down_9|NZ_CP020827.1_536065_537754_+	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1
GCF_002105615.1_ASM210561v1	NZ_CP020827	Listeria monocytogenes strain CFSAN028538 chromosome, complete genome	2	543633-547436	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,RT,DEDDh	Unclear	GTTTTAACTACTTATTATGAAATGTAAAT,GTTTTAACTACTTATTATGAAATGTAAAT,GTTTTAACTACTTATTATGAAATGTAAAT	29,29,29	4	4	544640-544677|544707-544743|546465-546500|546790-546826	NZ_CP020827.1_2384083-2384046|NZ_CP020827.1_1283989-1284025|NZ_CP020827.1_1260785-1260750|NZ_CP020827.1_1259169-1259205	I-A:I-A:I-A	57,58,58	58	Unclear	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,RT,DEDDh	NA,NA|148aa|down_5|NZ_CP020827.1_552983_553427_+,NA|492aa|down_9|NZ_CP020827.1_557736_559212_+	NA|477aa|up_9|NZ_CP020827.1_532608_534039_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|up_8|NZ_CP020827.1_534159_534975_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	cas6|241aa|up_7|NZ_CP020827.1_535327_536050_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b2|563aa|up_6|NZ_CP020827.1_536065_537754_+	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|290aa|up_5|NZ_CP020827.1_537743_538613_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas5|261aa|up_4|NZ_CP020827.1_538590_539373_+	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas3|736aa|up_3|NZ_CP020827.1_539440_541648_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas4|163aa|up_2|NZ_CP020827.1_541661_542150_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas1|333aa|up_1|NZ_CP020827.1_542153_543152_+	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas2|93aa|up_0|NZ_CP020827.1_543156_543435_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|123aa|down_0|NZ_CP020827.1_547508_547877_-	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|472aa|down_1|NZ_CP020827.1_548023_549439_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|335aa|down_2|NZ_CP020827.1_549570_550575_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|439aa|down_3|NZ_CP020827.1_550606_551923_-	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase	NA|251aa|down_4|NZ_CP020827.1_552124_552877_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|148aa|down_5|NZ_CP020827.1_552983_553427_+	NA	NA|554aa|down_6|NZ_CP020827.1_553472_555134_-	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|444aa|down_7|NZ_CP020827.1_555390_556722_+	COG5361, COG5361, Uncharacterized conserved protein [Function unknown]	NA|247aa|down_8|NZ_CP020827.1_556766_557507_-	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|492aa|down_9|NZ_CP020827.1_557736_559212_+	NA
GCF_002105615.1_ASM210561v1	NZ_CP020827	Listeria monocytogenes strain CFSAN028538 chromosome, complete genome	3	2544719-2544880	3	CRISPRCasFinder	no	WYL	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,RT,DEDDh	Unclear	TTTTTTTATGGAAACAACGCTCCACTTCGTTACGCCTTGTATTGGAGTTCTAGGG	55	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,RT,DEDDh	NA|140aa|up_7|NZ_CP020827.1_2530006_2530426_-,NA|58aa|down_3|NZ_CP020827.1_2547065_2547239_-	WYL|299aa|up_9|NZ_CP020827.1_2528320_2529217_-	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|190aa|up_8|NZ_CP020827.1_2529261_2529831_-	cd06259, YdcF-like, YdcF-like	NA|140aa|up_7|NZ_CP020827.1_2530006_2530426_-	NA	NA|1311aa|up_6|NZ_CP020827.1_2531375_2535308_-	COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]	NA|315aa|up_5|NZ_CP020827.1_2535322_2536267_-	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily	NA|1092aa|up_4|NZ_CP020827.1_2536326_2539602_-	COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]	NA|303aa|up_3|NZ_CP020827.1_2539985_2540894_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|155aa|up_2|NZ_CP020827.1_2540949_2541414_-	pfam01668, SmpB, SmpB protein	NA|794aa|up_1|NZ_CP020827.1_2541429_2543811_-	TIGR02063, Ribonuclease_R, ribonuclease R	NA|249aa|up_0|NZ_CP020827.1_2543844_2544591_-	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|78aa|down_0|NZ_CP020827.1_2544954_2545188_-	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]	NA|248aa|down_1|NZ_CP020827.1_2545287_2546031_-	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|240aa|down_2|NZ_CP020827.1_2546213_2546933_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|58aa|down_3|NZ_CP020827.1_2547065_2547239_-	NA	NA|431aa|down_4|NZ_CP020827.1_2547341_2548634_-	PRK00077, eno, enolase; Provisional	NA|511aa|down_5|NZ_CP020827.1_2548769_2550302_-	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|252aa|down_6|NZ_CP020827.1_2550303_2551059_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|397aa|down_7|NZ_CP020827.1_2551104_2552295_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|337aa|down_8|NZ_CP020827.1_2552429_2553440_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|349aa|down_9|NZ_CP020827.1_2553471_2554518_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
GCF_002105615.1_ASM210561v1	NZ_CP020827	Listeria monocytogenes strain CFSAN028538 chromosome, complete genome	4	2809716-2809826	4	CRISPRCasFinder	no		csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,RT,DEDDh	Orphan	AGCGATGATTTAATCCTTCCCAGAACTTTCAAAA	34	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,RT,DEDDh	NA,NA|74aa|down_2|NZ_CP020827.1_2810595_2810817_-,NA|52aa|down_4|NZ_CP020827.1_2812757_2812913_+,NA|214aa|down_5|NZ_CP020827.1_2813484_2814126_-	NA|330aa|up_9|NZ_CP020827.1_2801641_2802631_+	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional	NA|199aa|up_8|NZ_CP020827.1_2802652_2803249_+	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit	NA|125aa|up_7|NZ_CP020827.1_2803252_2803627_+	PRK14484, PRK14484, phosphotransferase mannnose-specific family component IIA; Provisional	NA|284aa|up_6|NZ_CP020827.1_2803732_2804584_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|280aa|up_5|NZ_CP020827.1_2804702_2805542_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|281aa|up_4|NZ_CP020827.1_2805662_2806505_+	COG0656, ARA1, Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]	NA|82aa|up_3|NZ_CP020827.1_2806550_2806796_-	pfam10704, DUF2508, Protein of unknown function (DUF2508)	NA|199aa|up_2|NZ_CP020827.1_2806810_2807407_-	PRK00076, recR, recombination protein RecR; Reviewed	NA|106aa|up_1|NZ_CP020827.1_2807515_2807833_-	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|580aa|up_0|NZ_CP020827.1_2807862_2809602_-	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated	NA|155aa|down_0|NZ_CP020827.1_2809928_2810393_-	pfam11687, DUF3284, Domain of unknown function (DUF3284)	NA|61aa|down_1|NZ_CP020827.1_2810410_2810593_-	pfam11384, DUF3188, Protein of unknown function (DUF3188)	NA|74aa|down_2|NZ_CP020827.1_2810595_2810817_-	NA	NA|455aa|down_3|NZ_CP020827.1_2810951_2812316_-	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]	NA|52aa|down_4|NZ_CP020827.1_2812757_2812913_+	NA	NA|214aa|down_5|NZ_CP020827.1_2813484_2814126_-	NA	NA|505aa|down_6|NZ_CP020827.1_2814823_2816338_-	cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases	NA|313aa|down_7|NZ_CP020827.1_2816453_2817392_-	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|316aa|down_8|NZ_CP020827.1_2817434_2818382_-	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|580aa|down_9|NZ_CP020827.1_2818523_2820263_-	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
