The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP019706	Pantoea alhagi strain LTYR-11Z chromosome, complete genome	4239970	976230	1020176	4239970	protease,transposase,integrase	Macacine_betaherpesvirus(28.57%)	31	1011655:1011669	1021491:1021505
WP_085068190.1|976230_979356_-|protease	autotransporter serine protease	protease	NA	NA	NA	NA
WP_085068191.1|980405_981839_-	6-phospho-beta-glucosidase	NA	NA	NA	NA	NA
WP_085068192.1|981845_983306_-	PTS cellobiose/arbutin/salicin transporter subunit IIBC	NA	NA	NA	NA	NA
WP_085068193.1|984251_985268_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_085068194.1|985381_985954_+	beta-carotene hydroxylase	NA	NA	NA	NA	NA
WP_085068195.1|985868_986819_-	phytoene/squalene synthase family protein	NA	NA	NA	NA	NA
WP_085068196.1|986818_988297_-	phytoene desaturase	NA	NA	NA	NA	NA
WP_085068197.1|988289_989468_-	lycopene beta-cyclase CrtY	NA	NA	NA	NA	NA
WP_085068198.1|989464_990730_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_085068199.1|990726_991755_-	type 2 isopentenyl-diphosphate Delta-isomerase	NA	NA	NA	NA	NA
WP_085068200.1|991754_992672_-	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	25.0	9.6e-08
WP_085068201.1|992903_993455_-	YtfJ family protein	NA	NA	NA	NA	NA
WP_085068202.1|993634_994648_+	HNH endonuclease	NA	NA	NA	NA	NA
WP_085068203.1|994647_995229_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_085068204.1|996156_996480_-	DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_085068205.1|996463_996823_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_085068206.1|997580_999941_+	SAM-dependent DNA methyltransferase	NA	A0A220A2U5	Liberibacter_phage	24.5	1.1e-28
WP_085072229.1|1000573_1001260_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_085068207.1|1001256_1004505_+	type I restriction endonuclease subunit R	NA	NA	NA	NA	NA
WP_157130148.1|1007122_1008290_+|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	87.9	1.4e-165
WP_157130149.1|1009166_1010277_+|transposase	IS3 family transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	26.2	1.2e-07
WP_085068209.1|1010436_1010736_-	hypothetical protein	NA	NA	NA	NA	NA
WP_085068210.1|1010743_1011568_-	hypothetical protein	NA	NA	NA	NA	NA
1011655:1011669	attL	CACTTGATTAAAAAT	NA	NA	NA	NA
WP_085068211.1|1012035_1012986_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA	NA
WP_004186793.1|1012978_1013374_-	hypothetical protein	NA	NA	NA	NA	NA
WP_085068212.1|1013448_1014261_-	DUF4942 domain-containing protein	NA	NA	NA	NA	NA
WP_157130150.1|1014290_1015411_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	41.2	3.1e-48
WP_085068215.1|1015460_1015694_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_157130138.1|1016501_1017613_-|transposase	IS3 family transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	26.2	1.2e-07
WP_085068217.1|1017920_1018868_-	hypothetical protein	NA	NA	NA	NA	NA
WP_085068218.1|1018919_1020176_-|integrase	tyrosine-type recombinase/integrase	integrase	B7SYF8	Stenotrophomonas_phage	42.4	4.3e-83
1021491:1021505	attR	CACTTGATTAAAAAT	NA	NA	NA	NA
>prophage 2
NZ_CP019706	Pantoea alhagi strain LTYR-11Z chromosome, complete genome	4239970	2477032	2486988	4239970		uncultured_Mediterranean_phage(28.57%)	9	NA	NA
WP_085070440.1|2477032_2477794_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.6	2.1e-64
WP_085070442.1|2477787_2478414_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	48.5	4.1e-34
WP_085070444.1|2478577_2479654_+	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	36.4	1.3e-06
WP_085070446.1|2479704_2480697_+	RNA polymerase sigma factor RpoS	NA	G8CLC7	Synechococcus_phage	37.6	1.6e-32
WP_085070447.1|2480793_2483337_-	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	21.8	4.7e-28
WP_085070449.1|2483645_2483987_+	alkylphosphonate utilization protein	NA	NA	NA	NA	NA
WP_085070451.1|2484044_2484932_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_085070452.1|2485322_2485823_+	nicotinamide-nucleotide amidase	NA	B5TK85	Pseudomonas_phage	49.4	6.0e-28
WP_085070454.1|2485917_2486988_+	recombinase RecA	NA	A0A2D1GPX2	Mycobacterium_phage	62.2	5.8e-113
>prophage 3
NZ_CP019706	Pantoea alhagi strain LTYR-11Z chromosome, complete genome	4239970	3244134	3288214	4239970	holin,tail,protease,capsid,terminase	Salmonella_phage(16.36%)	80	NA	NA
WP_085071305.1|3244134_3245427_-	DUF3596 domain-containing protein	NA	Q8W658	Enterobacteria_phage	53.8	5.3e-129
WP_085071306.1|3245459_3245708_-	DUF1233 family excisionase	NA	S4TND0	Salmonella_phage	55.6	7.3e-19
WP_085071307.1|3245788_3246133_-	hypothetical protein	NA	Q7Y3W5	Yersinia_phage	67.3	2.3e-39
WP_085071308.1|3246183_3246513_-	hypothetical protein	NA	NA	NA	NA	NA
WP_085071309.1|3246509_3246719_-	hypothetical protein	NA	A0A2H4IYB3	uncultured_Caudovirales_phage	62.1	9.8e-17
WP_085071310.1|3246721_3246985_-	DUF5405 family protein	NA	E5AGD5	Erwinia_phage	50.0	1.6e-19
WP_085071311.1|3247046_3247340_-	hypothetical protein	NA	NA	NA	NA	NA
WP_085071312.1|3247336_3247582_-	DNA polymerase III subunit theta	NA	A0A2H4J4A9	uncultured_Caudovirales_phage	79.5	4.5e-29
WP_085071313.1|3247578_3247767_-	hypothetical protein	NA	NA	NA	NA	NA
WP_085071314.1|3247796_3248066_-	hypothetical protein	NA	NA	NA	NA	NA
WP_085071315.1|3248294_3248702_-	hypothetical protein	NA	NA	NA	NA	NA
WP_085071316.1|3248833_3249034_-	hypothetical protein	NA	NA	NA	NA	NA
WP_085071317.1|3249036_3249339_-	hypothetical protein	NA	NA	NA	NA	NA
WP_085071318.1|3249362_3249953_-	DUF669 domain-containing protein	NA	G9L666	Escherichia_phage	64.5	1.4e-63
WP_085071319.1|3249949_3250630_-	AAA family ATPase	NA	K7PMI2	Enterobacteria_phage	85.0	1.4e-109
WP_157130186.1|3250611_3250788_-	hypothetical protein	NA	NA	NA	NA	NA
WP_085071320.1|3250774_3250975_-	DUF5444 family protein	NA	NA	NA	NA	NA
WP_085071321.1|3250977_3251106_-|protease	protease FtsH-inhibitory lysogeny factor CIII	protease	Q9AZ26	Salmonella_phage	74.4	2.0e-09
WP_085071322.1|3251252_3251435_-	hypothetical protein	NA	A0A1W6DXZ7	Salmonella_phage	51.7	9.1e-11
WP_085071323.1|3251455_3251662_-	hypothetical protein	NA	A0A1B0VMC0	Pseudomonas_phage	44.2	1.5e-06
WP_085071324.1|3251812_3252256_-	hypothetical protein	NA	E5AGE5	Erwinia_phage	66.7	1.5e-51
WP_157130187.1|3252340_3252670_-	hypothetical protein	NA	A0A0N7C217	Escherichia_phage	55.9	9.7e-11
WP_085071325.1|3252988_3253309_-	hypothetical protein	NA	M1PRT9	Cellulophaga_phage	58.4	2.2e-23
WP_085071326.1|3253404_3253779_-	hypothetical protein	NA	NA	NA	NA	NA
WP_085071327.1|3253775_3254399_-	DUF4065 domain-containing protein	NA	D0UIM3	Aggregatibacter_phage	40.4	1.4e-18
WP_085072337.1|3254757_3255417_-	helix-turn-helix domain-containing protein	NA	A0A0M4QWY1	Salmonella_phage	57.9	5.4e-69
WP_085071328.1|3255522_3255732_+	helix-turn-helix transcriptional regulator	NA	A0A1P8DTF8	Proteus_phage	56.5	1.1e-15
WP_085071329.1|3255870_3256209_+	hypothetical protein	NA	A0A1W6JNY4	Morganella_phage	56.1	1.5e-22
WP_157130188.1|3256242_3256386_+	hypothetical protein	NA	NA	NA	NA	NA
WP_085071330.1|3256382_3257285_+	DNA replication protein	NA	Q37929	Escherichia_phage	47.2	4.0e-67
WP_085071331.1|3257274_3258675_+	AAA family ATPase	NA	Q716D2	Shigella_phage	62.8	1.2e-166
WP_085071332.1|3258674_3259037_+	DUF2591 family protein	NA	G8EYI2	Enterobacteria_phage	53.9	6.4e-24
WP_157130189.1|3259036_3259210_+	hypothetical protein	NA	NA	NA	NA	NA
WP_085071333.1|3259211_3259403_+	hypothetical protein	NA	NA	NA	NA	NA
WP_085071334.1|3259389_3259575_+	hypothetical protein	NA	NA	NA	NA	NA
WP_085071335.1|3259546_3259981_+	recombination protein NinB	NA	A0A2H4J8D9	uncultured_Caudovirales_phage	82.3	4.6e-61
WP_085071336.1|3259977_3260565_+	S-adenosylmethionine-binding protein	NA	Q858E6	Salmonella_phage	78.1	7.4e-86
WP_085071337.1|3260561_3260774_+	hypothetical protein	NA	C6ZR59	Salmonella_phage	45.0	5.4e-07
WP_085071338.1|3260931_3261162_+	DUF3310 domain-containing protein	NA	A0A0A6Z5B6	Enterobacter_phage	71.0	3.5e-23
WP_157130190.1|3261146_3261317_+	NinE family protein	NA	Q5G8S3	Enterobacteria_phage	58.9	7.9e-09
WP_085071339.1|3261289_3261457_+	hypothetical protein	NA	NA	NA	NA	NA
WP_085071340.1|3261449_3261743_+	DUF1364 domain-containing protein	NA	E5AGG0	Erwinia_phage	79.4	3.5e-44
WP_085071341.1|3261739_3262102_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A2H4J472	uncultured_Caudovirales_phage	88.1	4.1e-55
WP_085071342.1|3262098_3262341_+	hypothetical protein	NA	A0A1V0E5R3	Salmonella_phage	72.5	4.1e-27
WP_085071343.1|3262337_3262544_+	hypothetical protein	NA	M9NZE6	Enterobacteria_phage	85.3	1.5e-30
WP_167373295.1|3262540_3262675_+	YlcG family protein	NA	A0A2H4JF91	uncultured_Caudovirales_phage	82.1	7.9e-12
WP_085071344.1|3262655_3263183_+	antiterminator	NA	A0A1R3Y5U9	Salmonella_virus	79.6	4.0e-67
WP_085072338.1|3263390_3263744_+|holin	phage holin, lambda family	holin	NA	NA	NA	NA
WP_085071345.1|3263727_3264360_+	glycoside hydrolase family 19 protein	NA	A0A0U4JP23	Pseudomonas_phage	47.1	3.7e-43
WP_085071346.1|3264347_3264785_+	Rz lytic protein	NA	NA	NA	NA	NA
WP_085071347.1|3265212_3265710_+	DNA-binding protein	NA	Q9AZ05	Salmonella_phage	90.2	5.8e-84
WP_085071348.1|3266007_3266217_+	hypothetical protein	NA	NA	NA	NA	NA
WP_085072339.1|3266249_3266447_-	hypothetical protein	NA	NA	NA	NA	NA
WP_085071349.1|3266524_3266959_+	ubiquitin carboxyl-hydrolase	NA	Q716H4	Shigella_phage	73.9	2.2e-47
WP_085071350.1|3266955_3268185_+|terminase	PBSX family phage terminase large subunit	terminase	I6RSK1	Salmonella_phage	90.6	2.0e-194
WP_085071351.1|3268184_3269543_+	DUF1073 domain-containing protein	NA	L7TRA1	Rhizobium_phage	24.7	7.8e-22
WP_085071352.1|3269484_3270336_+|capsid	minor capsid protein	capsid	Q7Y5U5	Haemophilus_phage	33.5	2.9e-30
WP_085071353.1|3270339_3271485_+	DUF2213 domain-containing protein	NA	A0A2H4J159	uncultured_Caudovirales_phage	38.1	2.4e-16
WP_085071354.1|3271487_3271979_+	hypothetical protein	NA	NA	NA	NA	NA
WP_085071355.1|3271982_3272948_+	DUF2184 domain-containing protein	NA	NA	NA	NA	NA
WP_085071356.1|3272962_3273325_+	DUF4054 domain-containing protein	NA	Q7Y5T9	Haemophilus_phage	43.1	2.7e-14
WP_085071357.1|3273334_3273802_+	hypothetical protein	NA	A0A2I7QS63	Vibrio_phage	49.0	3.7e-32
WP_085071358.1|3273794_3274151_+	hypothetical protein	NA	NA	NA	NA	NA
WP_085071359.1|3274147_3274633_+	hypothetical protein	NA	A0A2I7QS82	Vibrio_phage	55.9	1.6e-38
WP_085071360.1|3274636_3276139_+	DUF3383 family protein	NA	A0A2P9HXQ6	Yersinia_phage	58.5	2.4e-157
WP_085071361.1|3276149_3276581_+	hypothetical protein	NA	A0A2P9HXY3	Yersinia_phage	51.0	1.1e-30
WP_085071362.1|3276584_3276998_+	hypothetical protein	NA	A0A2P9HXM8	Yersinia_phage	44.3	7.4e-24
WP_167373273.1|3277012_3277165_+	hypothetical protein	NA	A0A2P9HXJ0	Yersinia_phage	66.0	4.9e-10
WP_085071363.1|3277151_3278741_+|tail	phage tail tape measure protein	tail	A0A2I7QS75	Vibrio_phage	46.1	2.1e-82
WP_085071364.1|3278740_3279547_+	hypothetical protein	NA	A0A2P9HXI6	Yersinia_phage	44.4	2.5e-52
WP_085071365.1|3279556_3279892_+	hypothetical protein	NA	A0A2I7RBP0	Vibrio_phage	55.6	6.6e-31
WP_085071366.1|3279891_3280842_+	hypothetical protein	NA	A0A2P9HXK2	Yersinia_phage	46.8	1.7e-71
WP_085071367.1|3280932_3281352_+	PH domain-containing protein	NA	NA	NA	NA	NA
WP_085071368.1|3281982_3282363_+	hypothetical protein	NA	A0A2H5BFY4	Vibrio_phage	56.0	6.8e-24
WP_085071369.1|3282346_3283525_+	hypothetical protein	NA	A0A2I7QS90	Vibrio_phage	47.8	1.1e-99
WP_085071370.1|3283524_3284247_+	DUF2612 domain-containing protein	NA	A0A2P9HXZ0	Yersinia_phage	51.9	4.2e-67
WP_085071371.1|3284239_3285313_+	hypothetical protein	NA	A0A2P9HXN3	Yersinia_phage	46.0	2.0e-25
WP_085071372.1|3285313_3285739_+	hypothetical protein	NA	NA	NA	NA	NA
WP_085071373.1|3285741_3286776_-	hypothetical protein	NA	NA	NA	NA	NA
WP_085071374.1|3286783_3288214_-	MBOAT family protein	NA	A0A125RNP0	Pseudomonas_phage	38.6	3.6e-86
>prophage 4
NZ_CP019706	Pantoea alhagi strain LTYR-11Z chromosome, complete genome	4239970	3842267	3855672	4239970	tRNA	Tupanvirus(22.22%)	15	NA	NA
WP_085071840.1|3842267_3843707_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	38.6	1.1e-58
WP_085071841.1|3843783_3844524_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_085071842.1|3844906_3845368_-	endopeptidase	NA	A0A1V0DZX6	Clostridioides_phage	36.9	2.2e-13
WP_085071843.1|3845438_3846194_-	vitamin B12 ABC transporter ATP-binding protein BtuD	NA	A0A2R8FG22	Brazilian_cedratvirus	28.3	2.2e-05
WP_085071844.1|3846193_3846739_-	glutathione peroxidase	NA	NA	NA	NA	NA
WP_085071845.1|3846772_3847756_-	vitamin B12 ABC transporter permease BtuC	NA	A0A2H4IY97	uncultured_Caudovirales_phage	27.0	1.1e-14
WP_085072363.1|3847857_3848289_-	DUF2502 domain-containing protein	NA	NA	NA	NA	NA
WP_038626354.1|3848506_3848806_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	38.9	9.4e-13
WP_085071846.1|3848810_3851198_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	A0A1L3IZU3	BeAn_58058_virus	28.1	5.1e-08
WP_085071847.1|3851212_3852196_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2K9L3A8	Tupanvirus	39.3	5.8e-35
WP_157130250.1|3852342_3852384_-	pheST operon leader peptide PheM	NA	NA	NA	NA	NA
WP_038626360.1|3852506_3852863_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_038626362.1|3852903_3853101_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_038626364.1|3853197_3853740_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	31.3	6.3e-15
WP_085071848.1|3853743_3855672_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.5	2.6e-127
>prophage 1
NZ_CP019707	Pantoea alhagi strain LTYR-11Z plasmid pPALTYR11Z, complete sequence	76331	6104	13268	76331	transposase	Escherichia_phage(33.33%)	6	NA	NA
WP_085072391.1|6104_6362_-	DNA polymerase III subunit theta	NA	A0A2H4J4A9	uncultured_Caudovirales_phage	48.7	2.0e-11
WP_167373307.1|6402_6549_-	DUF4113 domain-containing protein	NA	A0A1W6JNT0	Morganella_phage	56.2	2.3e-09
WP_085072393.1|7705_8671_-	ParB/RepB/Spo0J family partition protein	NA	Q38420	Escherichia_phage	52.3	1.9e-78
WP_085072394.1|8678_9872_-	ParA family protein	NA	A0A077SL49	Escherichia_phage	80.8	2.9e-182
WP_085072395.1|10687_11710_+	RepB family plasmid replication initiator protein	NA	J9Q7H0	Salmonella_phage	75.2	6.7e-135
WP_085072396.1|12350_13268_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	Q2A0A7	Sodalis_phage	51.9	3.6e-71
