assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002097715.1_ASM209771v1	NZ_CP020738	[Pseudomonas] mesoacidophila strain ATCC 31433 chromosome 2, complete sequence	1	97173-97285	1	PILER-CR	no		cas3,Cas14u_CAS-V,csa3,DinG,2OG_CAS,WYL	Orphan	AGCCCCCGAAAAAGCTCACCT	21	0	0	NA	NA	NA	2	2	Orphan	WYL,csa3,cas3,RT,DEDDh,Cas14u_CAS-V,DinG,2OG_CAS,PD-DExK	NA,NA|137aa|down_7|NZ_CP020738.1_106154_106565_-	NA|230aa|up_9|NZ_CP020738.1_86081_86771_-	cd17910, CheC_ClassII, chemotaxis protein CheC, Class II	NA|123aa|up_8|NZ_CP020738.1_86763_87132_-	cd17593, REC_CheC-like, phosphoacceptor receiver (REC) domain of uncharacterized response regulators containing a CheC domain	NA|750aa|up_7|NZ_CP020738.1_87607_89857_+	PRK13557, PRK13557, histidine kinase; Provisional	NA|185aa|up_6|NZ_CP020738.1_89893_90448_-	COG0431, COG0431, Predicted flavoprotein [General function prediction only]	NA|199aa|up_5|NZ_CP020738.1_90817_91414_+	PRK12545, PRK12545, RNA polymerase factor sigma-70	NA|65aa|up_4|NZ_CP020738.1_91394_91589_+	pfam13490, zf-HC2, Putative zinc-finger	NA|119aa|up_3|NZ_CP020738.1_91901_92258_-	cd03034, ArsC_ArsC, Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli	NA|221aa|up_2|NZ_CP020738.1_93090_93753_+	PHA02518, PHA02518, ParA-like protein; Provisional	NA|354aa|up_1|NZ_CP020738.1_93776_94838_+	TIGR00180, Probable_chromosome-partitioning_protein_ParB, ParB/RepB/Spo0J family partition protein	NA|455aa|up_0|NZ_CP020738.1_94893_96258_-	pfam01051, Rep_3, Initiator Replication protein	NA|394aa|down_0|NZ_CP020738.1_98111_99293_+	pfam11740, KfrA_N, Plasmid replication region DNA-binding N-term	NA|338aa|down_1|NZ_CP020738.1_99432_100446_-	pfam00589, Phage_integrase, Phage integrase family	NA|127aa|down_2|NZ_CP020738.1_100599_100980_-	pfam10616, DUF2471, Protein of unknown function (DUF2471)	NA|204aa|down_3|NZ_CP020738.1_101178_101790_-	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|400aa|down_4|NZ_CP020738.1_101951_103151_+	PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzyme A ligase; Provisional	NA|343aa|down_5|NZ_CP020738.1_103163_104192_+	PRK05396, tdh, L-threonine 3-dehydrogenase; Validated	NA|591aa|down_6|NZ_CP020738.1_104250_106023_-	PRK05482, PRK05482, potassium-transporting ATPase subunit A; Provisional	NA|137aa|down_7|NZ_CP020738.1_106154_106565_-	NA	NA|213aa|down_8|NZ_CP020738.1_106597_107236_-	cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate	NA|205aa|down_9|NZ_CP020738.1_107488_108103_+	COG1309, AcrR, Transcriptional regulator [Transcription]
GCF_002097715.1_ASM209771v1	NZ_CP020737	[Pseudomonas] mesoacidophila strain ATCC 31433 chromosome 1, complete sequence	1	93770-93842	1	CRISPRCasFinder	no		WYL,csa3,cas3,RT,DEDDh,Cas14u_CAS-V,DinG	Orphan	GCTAAAGCGCTAACGCTGGTCGAC	24	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,RT,DEDDh,Cas14u_CAS-V,DinG,2OG_CAS,PD-DExK	NA,NA	NA|174aa|up_9|NZ_CP020737.1_84917_85439_+	cd10518, SET_SETD1-like, SET domain (including post-SET domain) found in SET domain-containing proteins (SETD1A/SETD1B), histone-lysine N-methyltransferases (KMT2A/KMT2B/KMT2C/KMT2D) and similar proteins	NA|496aa|up_8|NZ_CP020737.1_85520_87008_-	PRK10337, PRK10337, sensor protein QseC; Provisional	NA|231aa|up_7|NZ_CP020737.1_87137_87830_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|77aa|up_6|NZ_CP020737.1_87953_88184_+	pfam12512, DUF3717, Protein of unknown function (DUF3717)	NA|103aa|up_5|NZ_CP020737.1_88274_88583_-	PRK00823, phhB, pterin-4-alpha-carbinolamine dehydratase; Validated	NA|321aa|up_4|NZ_CP020737.1_88703_89666_-	PRK11913, phhA, phenylalanine 4-monooxygenase; Reviewed	NA|162aa|up_3|NZ_CP020737.1_89735_90221_+	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|178aa|up_2|NZ_CP020737.1_90287_90821_-	cd07890, CYTH-like_AC_IV-like, Adenylyl cyclase (AC) class IV-like, a subgroup of the CYTH-like superfamily	NA|300aa|up_1|NZ_CP020737.1_91090_91990_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|505aa|up_0|NZ_CP020737.1_92134_93649_+	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|562aa|down_0|NZ_CP020737.1_93854_95540_+	PRK02106, PRK02106, choline dehydrogenase; Validated	NA|260aa|down_1|NZ_CP020737.1_96028_96808_+	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system	NA|252aa|down_2|NZ_CP020737.1_96804_97560_+	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]	NA|400aa|down_3|NZ_CP020737.1_97636_98836_+	cd06327, PBP1_SBP-like, periplasmic substrate-binding domain of active transport proteins (substrate binding proteins or SBPs)	NA|295aa|down_4|NZ_CP020737.1_98957_99842_+	COG0559, LivH, Branched-chain amino acid ABC-type transport system, permease components [Amino acid transport and metabolism]	NA|325aa|down_5|NZ_CP020737.1_99841_100816_+	cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of Escherichia coli LivM and related proteins	NA|386aa|down_6|NZ_CP020737.1_101714_102872_+	cd06333, PBP1_ABC_RPA1789-like, type 1 periplasmic binding-protein component (CouP) of an ABC system (CouPSTU; RPA1789, RPA1791-1793), involved in active transport of lignin-derived aromatic substrates, and its close homologs	NA|352aa|down_7|NZ_CP020737.1_103065_104121_+	cd06582, TM_PBP1_LivH_like, Transmembrane subunit (TM) of Escherichia coli LivH and related proteins	NA|595aa|down_8|NZ_CP020737.1_104125_105910_+	COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]	NA|252aa|down_9|NZ_CP020737.1_105906_106662_+	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
GCF_002097715.1_ASM209771v1	NZ_CP020737	[Pseudomonas] mesoacidophila strain ATCC 31433 chromosome 1, complete sequence	2	1208671-1208822	2	CRISPRCasFinder	no		WYL,csa3,cas3,RT,DEDDh,Cas14u_CAS-V,DinG	Orphan	GCCGACAAGCCTGCCGACCGCGCCGA	26	0	0	NA	NA	NA	3	3	Orphan	WYL,csa3,cas3,RT,DEDDh,Cas14u_CAS-V,DinG,2OG_CAS,PD-DExK	NA|155aa|up_7|NZ_CP020737.1_1200057_1200522_+,NA	NA|80aa|up_9|NZ_CP020737.1_1198423_1198663_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|411aa|up_8|NZ_CP020737.1_1198813_1200046_+	PRK07314, PRK07314, beta-ketoacyl-ACP synthase II	NA|155aa|up_7|NZ_CP020737.1_1200057_1200522_+	NA	NA|200aa|up_6|NZ_CP020737.1_1200613_1201213_+	TIGR02939, Sigma_factor_ECF_subfamily, RNA polymerase sigma factor RpoE	NA|207aa|up_5|NZ_CP020737.1_1201297_1201918_+	pfam03872, RseA_N, Anti sigma-E protein RseA, N-terminal domain	NA|352aa|up_4|NZ_CP020737.1_1201922_1202978_+	COG3026, RseB, Negative regulator of sigma E activity [Signal transduction mechanisms]	NA|491aa|up_3|NZ_CP020737.1_1202995_1204468_+	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|79aa|up_2|NZ_CP020737.1_1204478_1204715_+	pfam05768, DUF836, Glutaredoxin-like domain (DUF836)	NA|598aa|up_1|NZ_CP020737.1_1204849_1206643_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|298aa|up_0|NZ_CP020737.1_1206659_1207553_+	PRK10861, PRK10861, signal peptidase I	NA|300aa|down_0|NZ_CP020737.1_1208979_1209879_+	PRK00089, era, GTPase Era; Reviewed	NA|280aa|down_1|NZ_CP020737.1_1209865_1210705_+	PRK00085, recO, DNA repair protein RecO; Reviewed	NA|258aa|down_2|NZ_CP020737.1_1210701_1211475_+	PRK05265, PRK05265, pyridoxine 5'-phosphate synthase; Provisional	NA|150aa|down_3|NZ_CP020737.1_1211559_1212009_+	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional	NA|343aa|down_4|NZ_CP020737.1_1212024_1213053_+	PRK05337, PRK05337, beta-hexosaminidase; Provisional	NA|462aa|down_5|NZ_CP020737.1_1213164_1214550_-	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|186aa|down_6|NZ_CP020737.1_1214820_1215378_-	PRK00529, PRK00529, elongation factor P; Validated	NA|398aa|down_7|NZ_CP020737.1_1215508_1216702_-	pfam10093, EarP, Elongation-Factor P (EF-P) rhamnosyltransferase EarP	NA|671aa|down_8|NZ_CP020737.1_1216780_1218793_+	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|196aa|down_9|NZ_CP020737.1_1218874_1219462_+	PRK10832, PRK10832, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
GCF_002097715.1_ASM209771v1	NZ_CP020737	[Pseudomonas] mesoacidophila strain ATCC 31433 chromosome 1, complete sequence	3	2355817-2355935	3	CRISPRCasFinder	no		WYL,csa3,cas3,RT,DEDDh,Cas14u_CAS-V,DinG	Orphan	AGCGAGCGTGGGGGTCGTGCCAGCCTCCGCCGGGCCGCCCC	41	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,RT,DEDDh,Cas14u_CAS-V,DinG,2OG_CAS,PD-DExK	NA,NA	NA|531aa|up_9|NZ_CP020737.1_2343902_2345495_+	PRK09255, PRK09255, malate synthase; Validated	NA|138aa|up_8|NZ_CP020737.1_2345619_2346033_-	COG2105, COG2105, Uncharacterized conserved protein [Function unknown]	NA|166aa|up_7|NZ_CP020737.1_2346068_2346566_-	PRK09372, PRK09372, ribonuclease E inhibitor RraA	NA|293aa|up_6|NZ_CP020737.1_2346690_2347569_+	cd06124, cupin_NimR-like_N, AraC/XylS family transcriptional regulators similar to NimR, N-terminal cupin domain	NA|155aa|up_5|NZ_CP020737.1_2347583_2348048_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|470aa|up_4|NZ_CP020737.1_2349554_2350964_-	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed	NA|308aa|up_3|NZ_CP020737.1_2351215_2352139_+	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|226aa|up_2|NZ_CP020737.1_2352227_2352905_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|543aa|up_1|NZ_CP020737.1_2353033_2354662_-	COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]	NA|366aa|up_0|NZ_CP020737.1_2354658_2355756_-	COG4239, COG4239, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|348aa|down_0|NZ_CP020737.1_2355996_2357040_-	COG4174, COG4174, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|625aa|down_1|NZ_CP020737.1_2357092_2358967_-	cd08497, PBP2_NikA_DppA_OppA_like_14, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|117aa|down_2|NZ_CP020737.1_2359176_2359527_-	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein	NA|111aa|down_3|NZ_CP020737.1_2359797_2360130_-	TIGR02847, Cytochrome_bo3_ubiquinol_oxidase_subunit_4, cytochrome o ubiquinol oxidase subunit IV	NA|205aa|down_4|NZ_CP020737.1_2360130_2360745_-	TIGR02842, Cytochrome_bo3_ubiquinol_oxidase_subunit_3, cytochrome o ubiquinol oxidase, subunit III	NA|670aa|down_5|NZ_CP020737.1_2360744_2362754_-	TIGR02843, Cytochrome_bo3_ubiquinol_oxidase_subunit_1, cytochrome o ubiquinol oxidase, subunit I	NA|296aa|down_6|NZ_CP020737.1_2362757_2363645_-	PRK10525, PRK10525, cytochrome o ubiquinol oxidase subunit II; Provisional	NA|510aa|down_7|NZ_CP020737.1_2363846_2365376_-	PRK05846, PRK05846, NADH:ubiquinone oxidoreductase subunit M; Reviewed	NA|415aa|down_8|NZ_CP020737.1_2365813_2367058_-	COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]	NA|351aa|down_9|NZ_CP020737.1_2367619_2368672_-	pfam01032, FecCD, FecCD transport family
GCF_002097715.1_ASM209771v1	NZ_CP020737	[Pseudomonas] mesoacidophila strain ATCC 31433 chromosome 1, complete sequence	4	3435938-3436070	4	CRISPRCasFinder	no		WYL,csa3,cas3,RT,DEDDh,Cas14u_CAS-V,DinG	Orphan	TCGGAGGCCGGATATCCACATCGGGCTGGCGAAACGTTCGATCGA	45	1	2	3435983-3436025|3435983-3436025	NZ_CP020737.1_3435806-3435848|NZ_CP020737.1_3436337-3436379	NA	1	1	Orphan	WYL,csa3,cas3,RT,DEDDh,Cas14u_CAS-V,DinG,2OG_CAS,PD-DExK	NA|46aa|up_3|NZ_CP020737.1_3427841_3427979_-,NA	NA|421aa|up_9|NZ_CP020737.1_3420669_3421932_+	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	NA|449aa|up_8|NZ_CP020737.1_3422359_3423706_+	PRK06943, PRK06943, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional	NA|406aa|up_7|NZ_CP020737.1_3423702_3424920_+	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|240aa|up_6|NZ_CP020737.1_3424916_3425636_+	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|340aa|up_5|NZ_CP020737.1_3425670_3426690_+	PRK15108, PRK15108, biotin synthase; Provisional	NA|241aa|up_4|NZ_CP020737.1_3426857_3427580_-	COG3142, CutC, Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]	NA|46aa|up_3|NZ_CP020737.1_3427841_3427979_-	NA	NA|429aa|up_2|NZ_CP020737.1_3428158_3429445_-	cd01948, EAL, EAL domain	NA|556aa|up_1|NZ_CP020737.1_3429777_3431445_+	TIGR00831, Putative_Na+/H+_exchanger_Rv2287/MT2345/Mb2309	NA|1191aa|up_0|NZ_CP020737.1_3431536_3435109_-	PRK13030, PRK13030, indolepyruvate ferredoxin oxidoreductase family protein	NA|137aa|down_0|NZ_CP020737.1_3436955_3437366_-	pfam07007, LprI, Lysozyme inhibitor LprI	NA|273aa|down_1|NZ_CP020737.1_3437310_3438129_-	cd00118, LysM, Lysin Motif is a small domain involved in binding peptidoglycan	NA|205aa|down_2|NZ_CP020737.1_3438617_3439232_+	cd03046, GST_N_GTT1_like, GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S	NA|324aa|down_3|NZ_CP020737.1_3439244_3440216_-	pfam17655, IRK_C, Inward rectifier potassium channel C-terminal domain	NA|398aa|down_4|NZ_CP020737.1_3440445_3441639_+	cd02114, bact_SorA_Moco, sulfite:cytochrome c oxidoreductase subunit A (SorA), molybdopterin binding domain	NA|120aa|down_5|NZ_CP020737.1_3441649_3442009_+	pfam13442, Cytochrome_CBB3, Cytochrome C oxidase, cbb3-type, subunit III	NA|341aa|down_6|NZ_CP020737.1_3442034_3443057_-	COG1613, Sbp, ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|298aa|down_7|NZ_CP020737.1_3443505_3444399_+	cd00950, DHDPS, Dihydrodipicolinate synthase (DHDPS)	NA|127aa|down_8|NZ_CP020737.1_3444420_3444801_-	cd09872, PIN_Sll0205-like, VapC-like PIN domain of Sll0205 protein and homologs	NA|76aa|down_9|NZ_CP020737.1_3444800_3445028_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]
