assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002089095.2_ASM208909v2	NZ_CP019595	Staphylococcus aureus strain GD1677 chromosome, complete genome	1	292949-293148	1	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG,TnsE_C	Orphan	TGCAAGTTGGCGGGGCCCCAACACAGAAGCT	31	2	2	292980-293004|293036-293060	NZ_CP019595.2_293149-293173|NZ_CP019595.2_2140736-2140760	NA	3	3	Orphan	csa3,WYL,cas3,DEDDh,DinG,TnsE_C	NA,NA|131aa|down_5|NZ_CP019595.2_298324_298717_+,NA|32aa|down_8|NZ_CP019595.2_300355_300451_-	NA|574aa|up_9|NZ_CP019595.2_280395_282117_+	pfam18674, TarS_C1, TarS beta-glycosyltransferase C-terminal domain 1	NA|225aa|up_8|NZ_CP019595.2_282260_282935_+	PRK13276, PRK13276, iron-sulfur cluster repair di-iron protein ScdA	NA|580aa|up_7|NZ_CP019595.2_283196_284936_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|247aa|up_6|NZ_CP019595.2_284938_285679_+	PRK14084, PRK14084, DNA-binding response regulator	NA|148aa|up_5|NZ_CP019595.2_285791_286235_+	PRK04125, PRK04125, antiholin-like protein LrgA	NA|234aa|up_4|NZ_CP019595.2_286227_286929_+	PRK04288, PRK04288, antiholin-like protein LrgB; Provisional	NA|764aa|up_3|NZ_CP019595.2_287269_289561_+	COG3256, NorB, Nitric oxide reductase large subunit [Inorganic ion transport and metabolism]	NA|235aa|up_2|NZ_CP019595.2_289786_290491_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|264aa|up_1|NZ_CP019595.2_290639_291431_+	COG2190, NagE, Phosphotransferase system IIA components [Carbohydrate transport and metabolism]	NA|479aa|up_0|NZ_CP019595.2_291446_292883_+	PRK09589, celA, 6-phospho-beta-glucosidase; Reviewed	NA|254aa|down_0|NZ_CP019595.2_293458_294220_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|305aa|down_1|NZ_CP019595.2_294471_295386_-	TIGR02152, Putative_ribokinase, ribokinase	NA|135aa|down_2|NZ_CP019595.2_295413_295818_-	PRK11797, PRK11797, D-ribose pyranase; Provisional	NA|294aa|down_3|NZ_CP019595.2_295832_296714_-	pfam06800, Sugar_transport, Sugar transport protein	NA|333aa|down_4|NZ_CP019595.2_296945_297944_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|131aa|down_5|NZ_CP019595.2_298324_298717_+	NA	NA|225aa|down_6|NZ_CP019595.2_299100_299775_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|140aa|down_7|NZ_CP019595.2_299790_300210_+	COG5527, COG5527, Protein involved in initiation of plasmid replication [DNA replication, recombination, and repair]	NA|32aa|down_8|NZ_CP019595.2_300355_300451_-	NA	NA|236aa|down_9|NZ_CP019595.2_300847_301555_-	pfam02511, Thy1, Thymidylate synthase complementing protein
GCF_002089095.2_ASM208909v2	NZ_CP019595	Staphylococcus aureus strain GD1677 chromosome, complete genome	2	896345-896427	2	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG,TnsE_C	Orphan	CACCCCAACTCGCATTGCTTGTAGAA	26	1	26	896371-896401|896371-896401|896371-896401|896371-896401|896371-896401|896371-896401|896371-896401|896371-896401|896371-896401|896371-896401|896371-896401|896371-896401|896371-896401|896371-896401|896371-896401|896371-896401|896371-896401|896371-896401|896371-896401|896371-896401|896371-896401|896371-896401|896371-896401|896371-896401|896371-896401|896371-896401	NZ_CP019595.2_990755-990725|NZ_CP019595.2_1011517-1011547|NZ_CP019595.2_1986548-1986578|NZ_CP019595.2_1986658-1986688|NZ_CP019595.2_2054915-2054945|NZ_CP019595.2_274961-274991|NZ_CP019595.2_275019-275049|NZ_CP019595.2_275077-275107|NZ_CP019595.2_458235-458205|NZ_CP019595.2_725247-725217|NZ_CP019595.2_850057-850027|NZ_CP019595.2_941385-941415|NZ_CP019595.2_1104485-1104515|NZ_CP019595.2_1204813-1204783|NZ_CP019595.2_1204867-1204837|NZ_CP019595.2_1797997-1797967|NZ_CP019595.2_1888775-1888745|NZ_CP019595.2_2304155-2304185|NZ_CP019595.2_2349279-2349249|NZ_CP019595.2_905352-905382|NZ_CP019595.2_945523-945493|NZ_CP019595.2_1413596-1413626|NZ_CP019595.2_1459686-1459716|NZ_CP019595.2_2314903-2314933|NZ_CP019595.2_2314958-2314988|NZ_CP019595.2_2750150-2750180	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG,TnsE_C	NA,NA	NA|280aa|up_9|NZ_CP019595.2_883594_884434_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP019595.2_884607_885258_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP019595.2_885254_885491_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP019595.2_885759_887745_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP019595.2_887752_890599_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP019595.2_891208_892141_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP019595.2_892146_892986_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP019595.2_892993_893479_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP019595.2_893486_894926_+	sd00006, TPR, Tetratricopeptide repeat	NA|312aa|up_0|NZ_CP019595.2_894992_895928_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP019595.2_896695_897607_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP019595.2_897603_898599_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP019595.2_898707_899652_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP019595.2_900221_900809_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|545aa|down_4|NZ_CP019595.2_900991_902626_+	PRK13529, PRK13529, oxaloacetate-decarboxylating malate dehydrogenase	NA|301aa|down_5|NZ_CP019595.2_902832_903735_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_6|NZ_CP019595.2_904437_905067_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_7|NZ_CP019595.2_905841_906855_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_8|NZ_CP019595.2_906907_907918_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_9|NZ_CP019595.2_908056_909247_+	PRK00073, pgk, phosphoglycerate kinase; Provisional
GCF_002089095.2_ASM208909v2	NZ_CP019595	Staphylococcus aureus strain GD1677 chromosome, complete genome	3	945792-945872	3	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG,TnsE_C	Orphan	TCTTTATCATTTCTGTCCCACTCCC	25	1	1	945817-945847	NZ_CP019595.2_890798-890768	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG,TnsE_C	NA|38aa|up_7|NZ_CP019595.2_940034_940148_+,NA|53aa|up_5|NZ_CP019595.2_941214_941373_-,NA|105aa|down_7|NZ_CP019595.2_953478_953793_-	NA|119aa|up_9|NZ_CP019595.2_939075_939432_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_8|NZ_CP019595.2_939589_939970_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_7|NZ_CP019595.2_940034_940148_+	NA	NA|293aa|up_6|NZ_CP019595.2_940149_941028_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|53aa|up_5|NZ_CP019595.2_941214_941373_-	NA	NA|129aa|up_4|NZ_CP019595.2_941729_942116_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|up_3|NZ_CP019595.2_942108_942405_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|up_2|NZ_CP019595.2_942654_943680_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|up_1|NZ_CP019595.2_943672_944368_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|up_0|NZ_CP019595.2_944385_945207_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_0|NZ_CP019595.2_946014_946209_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_1|NZ_CP019595.2_946442_947294_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_2|NZ_CP019595.2_947621_948383_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_3|NZ_CP019595.2_948481_949789_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|417aa|down_4|NZ_CP019595.2_949894_951145_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|155aa|down_5|NZ_CP019595.2_951134_951599_+	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family	NA|466aa|down_6|NZ_CP019595.2_951749_953147_+	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|105aa|down_7|NZ_CP019595.2_953478_953793_-	NA	NA|347aa|down_8|NZ_CP019595.2_954161_955202_+	COG4536, CorB, Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]	NA|356aa|down_9|NZ_CP019595.2_955215_956283_+	COG2070, COG2070, Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
GCF_002089095.2_ASM208909v2	NZ_CP019595	Staphylococcus aureus strain GD1677 chromosome, complete genome	4	1798010-1798096	4	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG,TnsE_C	Orphan	TGCAAGTTGGGGTGGGGCCCCAACATAGA	29	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG,TnsE_C	NA,NA	NA|423aa|up_9|NZ_CP019595.2_1782477_1783746_-	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed	NA|374aa|up_8|NZ_CP019595.2_1783794_1784916_-	PRK14035, PRK14035, citrate synthase; Provisional	NA|454aa|up_7|NZ_CP019595.2_1785263_1786625_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|586aa|up_6|NZ_CP019595.2_1786968_1788726_-	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|323aa|up_5|NZ_CP019595.2_1788747_1789716_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|315aa|up_4|NZ_CP019595.2_1789984_1790929_-	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|286aa|up_3|NZ_CP019595.2_1790928_1791786_-	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|410aa|up_2|NZ_CP019595.2_1791980_1793210_-	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|1066aa|up_1|NZ_CP019595.2_1793658_1796856_-	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|314aa|up_0|NZ_CP019595.2_1796876_1797818_-	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|433aa|down_0|NZ_CP019595.2_1798187_1799486_-	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|138aa|down_1|NZ_CP019595.2_1799690_1800104_+	pfam00582, Usp, Universal stress protein family	NA|230aa|down_2|NZ_CP019595.2_1800609_1801299_-	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|352aa|down_3|NZ_CP019595.2_1801473_1802529_+	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|373aa|down_4|NZ_CP019595.2_1802844_1803963_-	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|167aa|down_5|NZ_CP019595.2_1804103_1804604_+	pfam00582, Usp, Universal stress protein family	NA|401aa|down_6|NZ_CP019595.2_1804850_1806053_-	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|316aa|down_7|NZ_CP019595.2_1806140_1807088_-	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|165aa|down_8|NZ_CP019595.2_1807210_1807705_-	PRK00522, tpx, thiol peroxidase	NA|257aa|down_9|NZ_CP019595.2_1807802_1808573_-	PRK10621, PRK10621, hypothetical protein; Provisional
GCF_002089095.2_ASM208909v2	NZ_CP019595	Staphylococcus aureus strain GD1677 chromosome, complete genome	5	1800430-1800512	5	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG,TnsE_C	Orphan	GAAGCTGACGAAAAAGTCAGCTTAC	25	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG,TnsE_C	NA,NA	NA|454aa|up_9|NZ_CP019595.2_1785263_1786625_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|586aa|up_8|NZ_CP019595.2_1786968_1788726_-	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|323aa|up_7|NZ_CP019595.2_1788747_1789716_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|315aa|up_6|NZ_CP019595.2_1789984_1790929_-	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|286aa|up_5|NZ_CP019595.2_1790928_1791786_-	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|410aa|up_4|NZ_CP019595.2_1791980_1793210_-	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|1066aa|up_3|NZ_CP019595.2_1793658_1796856_-	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|314aa|up_2|NZ_CP019595.2_1796876_1797818_-	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|433aa|up_1|NZ_CP019595.2_1798187_1799486_-	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|138aa|up_0|NZ_CP019595.2_1799690_1800104_+	pfam00582, Usp, Universal stress protein family	NA|230aa|down_0|NZ_CP019595.2_1800609_1801299_-	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|352aa|down_1|NZ_CP019595.2_1801473_1802529_+	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|373aa|down_2|NZ_CP019595.2_1802844_1803963_-	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|167aa|down_3|NZ_CP019595.2_1804103_1804604_+	pfam00582, Usp, Universal stress protein family	NA|401aa|down_4|NZ_CP019595.2_1804850_1806053_-	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|316aa|down_5|NZ_CP019595.2_1806140_1807088_-	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|165aa|down_6|NZ_CP019595.2_1807210_1807705_-	PRK00522, tpx, thiol peroxidase	NA|257aa|down_7|NZ_CP019595.2_1807802_1808573_-	PRK10621, PRK10621, hypothetical protein; Provisional	NA|408aa|down_8|NZ_CP019595.2_1808616_1809840_-	PRK01565, PRK01565, thiamine biosynthesis protein ThiI; Provisional	NA|383aa|down_9|NZ_CP019595.2_1809839_1810988_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
GCF_002089095.2_ASM208909v2	NZ_CP019595	Staphylococcus aureus strain GD1677 chromosome, complete genome	6	1888784-1888877	6	CRISPRCasFinder	no	csa3	csa3,WYL,cas3,DEDDh,DinG,TnsE_C	Type I-A	GCAATGCGCGTTGGGGTGTGGGGCCCCAACATAG	34	1	1	1888818-1888843	NZ_CP019595.2_1986620-1986595	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG,TnsE_C	NA|75aa|up_5|NZ_CP019595.2_1884877_1885102_-,NA|148aa|up_2|NZ_CP019595.2_1886313_1886757_-,NA|101aa|down_1|NZ_CP019595.2_1890011_1890314_+	NA|501aa|up_9|NZ_CP019595.2_1879909_1881412_-	COG4529, COG4529, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|105aa|up_8|NZ_CP019595.2_1882054_1882369_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|431aa|up_7|NZ_CP019595.2_1882368_1883661_+	PRK15445, PRK15445, arsenical efflux pump membrane protein ArsB	NA|285aa|up_6|NZ_CP019595.2_1883747_1884602_-	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism]	NA|75aa|up_5|NZ_CP019595.2_1884877_1885102_-	NA	NA|157aa|up_4|NZ_CP019595.2_1885300_1885771_+	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|148aa|up_3|NZ_CP019595.2_1885883_1886327_+	pfam06338, ComK, ComK protein	NA|148aa|up_2|NZ_CP019595.2_1886313_1886757_-	NA	NA|212aa|up_1|NZ_CP019595.2_1887054_1887690_+	pfam02517, Abi, CAAX protease self-immunity	NA|207aa|up_0|NZ_CP019595.2_1887856_1888477_+	pfam02517, Abi, CAAX protease self-immunity	NA|238aa|down_0|NZ_CP019595.2_1889039_1889753_-	PRK12376, PRK12376, putative translaldolase; Provisional	NA|101aa|down_1|NZ_CP019595.2_1890011_1890314_+	NA	NA|122aa|down_2|NZ_CP019595.2_1890568_1890934_+	PRK14201, PRK14201, fluoride efflux transporter CrcB	NA|118aa|down_3|NZ_CP019595.2_1890930_1891284_+	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning]	NA|278aa|down_4|NZ_CP019595.2_1891533_1892367_-	COG0656, ARA1, Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]	NA|303aa|down_5|NZ_CP019595.2_1892578_1893487_-	pfam08378, NERD, Nuclease-related domain	NA|398aa|down_6|NZ_CP019595.2_1893611_1894805_-	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|531aa|down_7|NZ_CP019595.2_1895176_1896769_+	cd00484, PEPCK_ATP, Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis	NA|249aa|down_8|NZ_CP019595.2_1897065_1897812_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|158aa|down_9|NZ_CP019595.2_1897816_1898290_-	TIGR02705, conserved_hypothetical_protein, nucleoside triphosphatase YtkD
GCF_002089095.2_ASM208909v2	NZ_CP019595	Staphylococcus aureus strain GD1677 chromosome, complete genome	7	2129662-2129874	7	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG,TnsE_C	Orphan	TGATGTGCTGTTGTGGAAGCTTGGTGTCGTGCCATGCTACTTTGATG	47	0	0	NA	NA	NA	2	2	Orphan	csa3,WYL,cas3,DEDDh,DinG,TnsE_C	NA|46aa|up_4|NZ_CP019595.2_2126523_2126661_-,NA|107aa|down_0|NZ_CP019595.2_2129907_2130228_+	NA|232aa|up_9|NZ_CP019595.2_2119215_2119911_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|507aa|up_8|NZ_CP019595.2_2120263_2121784_-	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	NA|452aa|up_7|NZ_CP019595.2_2122299_2123655_-	COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]	NA|357aa|up_6|NZ_CP019595.2_2123669_2124740_-	PRK01966, ddl, D-alanine--D-alanine ligase	NA|401aa|up_5|NZ_CP019595.2_2125057_2126260_+	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|46aa|up_4|NZ_CP019595.2_2126523_2126661_-	NA	NA|70aa|up_3|NZ_CP019595.2_2126788_2126998_-	cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones	NA|98aa|up_2|NZ_CP019595.2_2127009_2127303_-	cd10152, SaCsoR-like_DUF156, Staphylococcus aureus copper-sensitive operon repressor (CsoR), and related domains; this family was previously known as part of DUF156	NA|495aa|up_1|NZ_CP019595.2_2127468_2128953_+	TIGR04265, bac_cardiolipin, cardiolipin synthase	NA|216aa|up_0|NZ_CP019595.2_2128980_2129628_+	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only]	NA|107aa|down_0|NZ_CP019595.2_2129907_2130228_+	NA	NA|291aa|down_1|NZ_CP019595.2_2131869_2132742_-	PRK02463, PRK02463, OxaA-like protein precursor; Provisional	NA|214aa|down_2|NZ_CP019595.2_2132827_2133469_-	PRK00043, thiE, thiamine phosphate synthase	NA|264aa|down_3|NZ_CP019595.2_2133470_2134262_-	PRK09355, PRK09355, hydroxyethylthiazole kinase; Validated	NA|277aa|down_4|NZ_CP019595.2_2134245_2135076_-	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed	NA|230aa|down_5|NZ_CP019595.2_2135068_2135758_-	TIGR04306, salvage_TenA, thiaminase II	NA|232aa|down_6|NZ_CP019595.2_2136144_2136840_-	pfam06737, Transglycosylas, Transglycosylase-like domain	NA|132aa|down_7|NZ_CP019595.2_2137228_2137624_-	pfam00436, SSB, Single-strand binding protein family	NA|168aa|down_8|NZ_CP019595.2_2137754_2138258_+	pfam14183, YwpF, YwpF-like protein	NA|147aa|down_9|NZ_CP019595.2_2138314_2138755_-	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ
GCF_002089095.2_ASM208909v2	NZ_CP019595	Staphylococcus aureus strain GD1677 chromosome, complete genome	8	2185293-2185443	8	CRISPRCasFinder	no	csa3,TnsE_C	csa3,WYL,cas3,DEDDh,DinG,TnsE_C	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	csa3,WYL,cas3,DEDDh,DinG,TnsE_C	NA|77aa|up_5|NZ_CP019595.2_2180165_2180396_-,NA|364aa|up_0|NZ_CP019595.2_2184183_2185275_+,NA|35aa|down_0|NZ_CP019595.2_2185772_2185877_-,NA|53aa|down_1|NZ_CP019595.2_2186556_2186715_+,NA|31aa|down_2|NZ_CP019595.2_2187150_2187243_+	NA|237aa|up_9|NZ_CP019595.2_2175775_2176486_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP019595.2_2176606_2177050_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP019595.2_2177249_2177663_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP019595.2_2178120_2179494_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP019595.2_2180165_2180396_-	NA	NA|313aa|up_4|NZ_CP019595.2_2180426_2181365_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP019595.2_2181798_2182464_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP019595.2_2182615_2182936_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP019595.2_2182937_2183918_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP019595.2_2184183_2185275_+	NA	NA|35aa|down_0|NZ_CP019595.2_2185772_2185877_-	NA	NA|53aa|down_1|NZ_CP019595.2_2186556_2186715_+	NA	NA|31aa|down_2|NZ_CP019595.2_2187150_2187243_+	NA	NA|286aa|down_3|NZ_CP019595.2_2187372_2188230_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_CP019595.2_2188297_2189080_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|203aa|down_5|NZ_CP019595.2_2189369_2189978_-	pfam08937, DUF1863, MTH538 TIR-like domain (DUF1863)	NA|345aa|down_6|NZ_CP019595.2_2190005_2191040_-	pfam13676, TIR_2, TIR domain	NA|490aa|down_7|NZ_CP019595.2_2191133_2192603_-	pfam18185, STALD, Sir2- and TIR-associating SLOG family	NA|97aa|down_8|NZ_CP019595.2_2192662_2192953_-	pfam11867, DUF3387, Domain of unknown function (DUF3387)	TnsE_C|135aa|down_9|NZ_CP019595.2_2193077_2193482_-	pfam18623, TnsE_C, TnsE C-terminal domain
GCF_002089095.2_ASM208909v2	NZ_CP019595	Staphylococcus aureus strain GD1677 chromosome, complete genome	9	2349331-2349416	9	CRISPRCasFinder	no	WYL	csa3,WYL,cas3,DEDDh,DinG,TnsE_C	Unclear	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	7	2349361-2349386|2349361-2349386|2349361-2349386|2349361-2349386|2349361-2349386|2349361-2349386|2349361-2349386	NZ_CP019595.2_1677998-1677973|NZ_CP019595.2_941474-941449|NZ_CP019595.2_945594-945619|NZ_CP019595.2_990530-990555|NZ_CP019595.2_1409267-1409292|NZ_CP019595.2_2140774-2140799|NZ_CP019595.2_2481229-2481204	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG,TnsE_C	NA|65aa|up_6|NZ_CP019595.2_2342075_2342270_-,NA|78aa|down_1|NZ_CP019595.2_2350366_2350600_-,NA|110aa|down_8|NZ_CP019595.2_2358688_2359018_+	NA|248aa|up_9|NZ_CP019595.2_2337863_2338607_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|652aa|up_8|NZ_CP019595.2_2338632_2340588_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|270aa|up_7|NZ_CP019595.2_2341197_2342007_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|65aa|up_6|NZ_CP019595.2_2342075_2342270_-	NA	NA|467aa|up_5|NZ_CP019595.2_2342443_2343844_-	TIGR00931, Uncharacterized_Na+/H+_antiporter_HI_1107, Na+/H+ antiporter NhaC	NA|361aa|up_4|NZ_CP019595.2_2343938_2345021_-	pfam02317, Octopine_DH, NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain	NA|141aa|up_3|NZ_CP019595.2_2345268_2345691_+	COG3296, COG3296, Uncharacterized protein conserved in bacteria [Function unknown]	NA|167aa|up_2|NZ_CP019595.2_2345927_2346428_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|318aa|up_1|NZ_CP019595.2_2346790_2347744_+	cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains	NA|375aa|up_0|NZ_CP019595.2_2347835_2348960_-	PRK06753, PRK06753, hypothetical protein; Provisional	NA|213aa|down_0|NZ_CP019595.2_2349568_2350207_-	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism]	NA|78aa|down_1|NZ_CP019595.2_2350366_2350600_-	NA	NA|158aa|down_2|NZ_CP019595.2_2350894_2351368_-	COG2427, COG2427, Uncharacterized conserved protein [Function unknown]	NA|985aa|down_3|NZ_CP019595.2_2351367_2354322_-	COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only]	NA|308aa|down_4|NZ_CP019595.2_2354923_2355847_-	PRK09379, PRK09379, LytR family transcriptional regulator	NA|266aa|down_5|NZ_CP019595.2_2356003_2356801_-	COG0483, SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family [Carbohydrate transport and metabolism]	WYL|231aa|down_6|NZ_CP019595.2_2357185_2357878_+	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|246aa|down_7|NZ_CP019595.2_2357902_2358640_-	pfam02517, Abi, CAAX protease self-immunity	NA|110aa|down_8|NZ_CP019595.2_2358688_2359018_+	NA	NA|291aa|down_9|NZ_CP019595.2_2359462_2360335_+	COG1737, RpiR, Transcriptional regulators [Transcription]
GCF_002089095.2_ASM208909v2	NZ_CP019595	Staphylococcus aureus strain GD1677 chromosome, complete genome	10	2525492-2525586	10	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG,TnsE_C	Orphan	AGGCTCTTATGCAGTTGGTGCGAAGCAA	28	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG,TnsE_C	NA|249aa|up_9|NZ_CP019595.2_2515077_2515824_+,NA|121aa|down_0|NZ_CP019595.2_2526254_2526617_-,NA|105aa|down_8|NZ_CP019595.2_2533429_2533744_+	NA|249aa|up_9|NZ_CP019595.2_2515077_2515824_+	NA	NA|398aa|up_8|NZ_CP019595.2_2516047_2517241_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|250aa|up_7|NZ_CP019595.2_2517252_2518002_-	COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|272aa|up_6|NZ_CP019595.2_2517994_2518810_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|290aa|up_5|NZ_CP019595.2_2518806_2519676_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|312aa|up_4|NZ_CP019595.2_2519672_2520608_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|533aa|up_3|NZ_CP019595.2_2520620_2522219_-	TIGR02294, Nickel-binding_periplasmic_protein, nickel ABC transporter, nickel/metallophore periplasmic binding protein	NA|434aa|up_2|NZ_CP019595.2_2522361_2523663_-	COG4408, COG4408, Uncharacterized protein conserved in bacteria [Function unknown]	NA|273aa|up_1|NZ_CP019595.2_2523655_2524474_-	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family	NA|274aa|up_0|NZ_CP019595.2_2524484_2525306_-	COG0253, DapF, Diaminopimelate epimerase [Amino acid transport and metabolism]	NA|121aa|down_0|NZ_CP019595.2_2526254_2526617_-	NA	NA|273aa|down_1|NZ_CP019595.2_2526879_2527698_-	PRK08589, PRK08589, SDR family oxidoreductase	NA|513aa|down_2|NZ_CP019595.2_2527931_2529470_+	pfam03806, ABG_transport, AbgT putative transporter family	NA|141aa|down_3|NZ_CP019595.2_2529581_2530004_-	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|133aa|down_4|NZ_CP019595.2_2530475_2530874_-	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|137aa|down_5|NZ_CP019595.2_2530900_2531311_-	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|128aa|down_6|NZ_CP019595.2_2531765_2532149_-	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|403aa|down_7|NZ_CP019595.2_2532215_2533424_+	cd07657, F-BAR_Fes_Fer, The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases	NA|105aa|down_8|NZ_CP019595.2_2533429_2533744_+	NA	NA|140aa|down_9|NZ_CP019595.2_2535620_2536040_-	pfam07252, DUF1433, Protein of unknown function (DUF1433)
GCF_002089095.2_ASM208909v2	NZ_CP019595	Staphylococcus aureus strain GD1677 chromosome, complete genome	11	2553209-2553319	11	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG,TnsE_C	Orphan	GGTACTTCTGGTGTCGGTGGCGTTGGT	27	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG,TnsE_C	NA|89aa|up_3|NZ_CP019595.2_2547740_2548007_+,NA|103aa|up_2|NZ_CP019595.2_2548150_2548459_+,NA|98aa|down_0|NZ_CP019595.2_2556125_2556419_-	NA|262aa|up_9|NZ_CP019595.2_2540486_2541272_-	pfam04507, DUF576, Csa1 family	NA|255aa|up_8|NZ_CP019595.2_2541519_2542284_-	pfam04507, DUF576, Csa1 family	NA|258aa|up_7|NZ_CP019595.2_2542395_2543169_-	pfam04507, DUF576, Csa1 family	NA|310aa|up_6|NZ_CP019595.2_2543411_2544341_-	pfam09019, EcoRII-C, EcoRII C terminal	NA|398aa|up_5|NZ_CP019595.2_2544436_2545630_+	TIGR00675, Modification_methylase, DNA-methyltransferase (dcm)	NA|584aa|up_4|NZ_CP019595.2_2545705_2547457_+	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|89aa|up_3|NZ_CP019595.2_2547740_2548007_+	NA	NA|103aa|up_2|NZ_CP019595.2_2548150_2548459_+	NA	NA|289aa|up_1|NZ_CP019595.2_2548584_2549451_-	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|876aa|up_0|NZ_CP019595.2_2549630_2552258_-	pfam10425, SdrG_C_C, C-terminus of bacterial fibrinogen-binding adhesin	NA|98aa|down_0|NZ_CP019595.2_2556125_2556419_-	NA	NA|453aa|down_1|NZ_CP019595.2_2556459_2557818_-	TIGR00791, Gluconate_permease, gluconate transporter	NA|518aa|down_2|NZ_CP019595.2_2557934_2559488_-	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|226aa|down_3|NZ_CP019595.2_2559512_2560190_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|255aa|down_4|NZ_CP019595.2_2560346_2561111_-	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|231aa|down_5|NZ_CP019595.2_2561275_2561968_-	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|139aa|down_6|NZ_CP019595.2_2562198_2562615_-	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|608aa|down_7|NZ_CP019595.2_2562753_2564577_-	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|426aa|down_8|NZ_CP019595.2_2565488_2566766_-	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|204aa|down_9|NZ_CP019595.2_2567312_2567924_+	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]
