The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP019595	Staphylococcus aureus strain GD1677 chromosome, complete genome	2790204	254088	365308	2790204	transposase,holin,protease	Streptococcus_phage(25.81%)	98	NA	NA
WP_074347669.1|254088_255231_+|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_084567883.1|255546_256959_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000215221.1|257219_257576_-	DUF488 domain-containing protein	NA	NA	NA	NA	NA
WP_000773985.1|257732_257906_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000954803.1|257930_259076_-	nitric oxide dioxygenase	NA	NA	NA	NA	NA
WP_001031880.1|259648_260602_+	L-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_000838197.1|260922_262452_-	PTS transporter subunit EIIC	NA	A0A2I7SAJ6	Vibrio_phage	53.3	1.8e-11
WP_000823219.1|262813_263749_+	nucleoside hydrolase	NA	NA	NA	NA	NA
WP_001012740.1|264086_266183_+	transcription antiterminator	NA	NA	NA	NA	NA
WP_000531475.1|266167_266635_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_000815795.1|266657_266936_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_000120115.1|267162_268422_+	PTS galactitol transporter subunit IIC	NA	NA	NA	NA	NA
WP_000646193.1|268439_269495_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_000230358.1|269496_269643_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000645612.1|269666_270710_+	galactitol-1-phosphate 5-dehydrogenase	NA	E3SJ82	Synechococcus_phage	24.6	1.0e-13
WP_000638469.1|271237_271954_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000610172.1|271946_272972_+	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA	NA
WP_000167994.1|272993_274688_+	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA	NA
WP_000598270.1|275473_276643_+	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA	NA
WP_000872486.1|276918_277635_+	D-ribitol-5-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000610203.1|277627_278653_+	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA	NA
WP_000240920.1|278674_280363_+	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA	NA
WP_000975356.1|280395_282117_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	37.4	2.1e-11
WP_000608834.1|282260_282935_+	iron-sulfur cluster repair di-iron protein ScdA	NA	NA	NA	NA	NA
WP_000925394.1|283196_284936_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	31.5	1.5e-62
WP_000645457.1|284938_285679_+	DNA-binding response regulator	NA	NA	NA	NA	NA
WP_001792906.1|285791_286235_+|holin	antiholin-like murein hydrolase modulator LrgA	holin	NA	NA	NA	NA
WP_000607067.1|286227_286929_+|holin	antiholin-like protein LrgB	holin	NA	NA	NA	NA
WP_084567844.1|287269_289561_+	nitric-oxide reductase large subunit	NA	NA	NA	NA	NA
WP_000922329.1|289786_290491_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000066924.1|290639_291431_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000164008.1|291446_292883_+	6-phospho-beta-glucosidase	NA	A0A0B5JD41	Pandoravirus	25.8	2.2e-30
WP_000333331.1|293001_293199_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000031255.1|293458_294220_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000182750.1|294471_295386_-	ribokinase	NA	NA	NA	NA	NA
WP_000750483.1|295413_295818_-	D-ribose pyranase	NA	NA	NA	NA	NA
WP_000029208.1|295832_296714_-	ribose transporter RbsU	NA	NA	NA	NA	NA
WP_000757874.1|296945_297944_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_001159764.1|298324_298717_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001105987.1|299100_299775_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.6	6.8e-128
WP_078099726.1|299790_300210_+	RepB family plasmid replication initiator protein	NA	NA	NA	NA	NA
WP_113525237.1|300355_300451_-	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_012655891.1|300847_301555_-	FAD-dependent thymidylate synthase	NA	M1IEJ2	Bacillus_phage	60.6	8.0e-79
WP_025906304.1|301551_302043_-	dihydrofolate reductase	NA	A0A076GDN3	Bacillus_phage	40.9	2.9e-27
WP_012655889.1|302126_302702_-	recombinase family protein	NA	A0A1V0E035	Clostridioides_phage	30.1	1.9e-14
WP_012655888.1|303028_303640_+	recombinase family protein	NA	A0A219YA40	Aeromonas_phage	36.6	1.8e-18
WP_012655887.1|303667_303973_-	hypothetical protein	NA	NA	NA	NA	NA
WP_025906309.1|303994_304267_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001015311.1|304350_305031_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	1.5e-127
WP_012655884.1|305343_306819_+	bifunctional aminoglycoside N-acetyltransferase AAC(6')-Ie/aminoglycoside O-phosphotransferase APH(2'')-Ia	NA	A0A1X9I6C2	Streptococcus_phage	99.8	3.3e-284
WP_001814874.1|307191_307275_+	23S rRNA methyltransferase attenuation leader peptide	NA	NA	NA	NA	NA
WP_002292226.1|307399_308137_+	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	NA	E4ZFQ0	Streptococcus_phage	99.6	1.4e-134
WP_001255866.1|308441_309350_+	aminoglycoside nucleotidyltransferase ANT(6)-Ia	NA	E4ZFP8	Streptococcus_phage	100.0	2.8e-177
WP_002343777.1|309346_309637_+	hypothetical protein	NA	A0A1B0RXL7	Streptococcus_phage	100.0	5.3e-37
WP_031886480.1|309689_310328_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_002343779.1|310431_312060_+|transposase	IS1182 family transposase	transposase	A0A146ICT8	Staphylococcus_phage	30.7	2.9e-55
WP_002368882.1|312304_312574_+	peptide-binding protein	NA	A0A1X9I6D5	Streptococcus_phage	81.5	7.6e-22
WP_001814874.1|312594_312678_+	23S rRNA methyltransferase attenuation leader peptide	NA	NA	NA	NA	NA
WP_002292226.1|312802_313540_+	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	NA	E4ZFQ0	Streptococcus_phage	99.6	1.4e-134
WP_000576156.1|313894_314449_+	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	52.1	2.3e-36
WP_001240982.1|314452_317371_+|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	36.1	1.1e-169
WP_031886868.1|317677_320641_+|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	40.0	3.0e-212
WP_031886474.1|320918_322415_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_084567845.1|322680_323331_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.5	7.5e-124
WP_031886458.1|323698_325060_-	SLC45 family MFS transporter	NA	NA	NA	NA	NA
WP_031886459.1|325443_326052_-	recombinase family protein	NA	M9Q1K0	Clostridium_phage	33.5	6.8e-18
WP_031886460.1|326180_326759_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.1	4.2e-41
WP_031886461.1|326929_328264_-	persulfide dioxygenase-sulfurtransferase CstB	NA	NA	NA	NA	NA
WP_031886462.1|328291_329359_-	persulfide response sulfurtransferase CstA	NA	NA	NA	NA	NA
WP_019468539.1|329496_329757_+	persulfide-sensing transcriptional repressor CstR	NA	NA	NA	NA	NA
WP_031886463.1|329756_330512_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_049949216.1|330790_332530_+|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	77.9	1.8e-241
WP_049949217.1|332735_333905_+	DUF262 domain-containing protein	NA	NA	NA	NA	NA
WP_001791613.1|334097_334190_-	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_031886465.1|334356_334704_-	helix-turn-helix transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	40.0	1.6e-16
WP_031886466.1|334721_335339_-	CadD family cadmium resistance transporter	NA	NA	NA	NA	NA
WP_031886467.1|335450_335981_-	N-acetyltransferase	NA	A0A1P8CWJ6	Bacillus_phage	58.8	4.8e-52
WP_031886468.1|336945_337071_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031886469.1|338483_339350_-	replication initiator protein A	NA	NA	NA	NA	NA
WP_031886470.1|339789_340557_+	DUF536 domain-containing protein	NA	NA	NA	NA	NA
WP_031886471.1|341057_342530_-	MFS transporter	NA	NA	NA	NA	NA
WP_001105987.1|342824_343499_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.6	6.8e-128
WP_000337367.1|344977_345970_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000736798.1|346295_347246_+	glycine-glycine endopeptidase LytM	NA	V5R8R0	Arthrobacter_phage	42.7	1.5e-16
WP_000570073.1|347297_347957_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	32.5	2.0e-23
WP_000806128.1|347970_348891_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_031886308.1|348887_350054_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000038540.1|350121_351645_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000751205.1|351975_352869_-	CHAP domain-containing protein	NA	NA	NA	NA	NA
WP_001240826.1|353116_353410_+	WXG100 family type VII secretion effector EsxA	NA	NA	NA	NA	NA
WP_000728967.1|353492_356522_+	type VII secretion protein EsaA	NA	NA	NA	NA	NA
WP_000928933.1|356521_356980_+	type VII secretion protein EssA	NA	NA	NA	NA	NA
WP_162782990.1|356951_357194_+	type VII secretion protein EsaB	NA	NA	NA	NA	NA
WP_000240342.1|357206_358541_+	type VII secretion protein EssB	NA	NA	NA	NA	NA
WP_000549290.1|358562_363008_+	type VII secretion protein EssC	NA	V5UPA0	Mycobacterium_phage	23.6	2.2e-28
WP_000503899.1|363019_363316_+	TIGR04197 family type VII secretion effector	NA	NA	NA	NA	NA
WP_000182268.1|363333_363729_+	DUF5082 family protein	NA	NA	NA	NA	NA
WP_000527012.1|363754_365308_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP019595	Staphylococcus aureus strain GD1677 chromosome, complete genome	2790204	392683	436992	2790204	terminase,integrase,tail,holin,plate,protease,portal,capsid,head	Staphylococcus_phage(92.06%)	64	392573:392590	437526:437543
392573:392590	attL	ATCTTACAAGGGTGGGAT	NA	NA	NA	NA
WP_031883891.1|392683_393889_-|integrase	site-specific integrase	integrase	A0A1X9H094	Staphylococcus_phage	99.8	1.1e-221
WP_001166482.1|393998_394622_+	hypothetical protein	NA	B7T0F3	Staphylococcus_virus	99.5	9.8e-105
WP_000449655.1|394819_395215_-	hypothetical protein	NA	A0A2I6PEJ7	Staphylococcus_phage	100.0	3.8e-70
WP_000755721.1|395243_395678_-	hypothetical protein	NA	A0A2I6PEM0	Staphylococcus_phage	100.0	1.2e-24
WP_031886309.1|395695_396157_-	toxin	NA	A0A2I6PEK4	Staphylococcus_phage	98.0	1.4e-84
WP_000429766.1|396169_396499_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PEN2	Staphylococcus_phage	100.0	3.2e-54
WP_001115060.1|396659_396851_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PEL6	Staphylococcus_phage	100.0	2.3e-28
WP_001025401.1|396939_397185_+	DUF2829 domain-containing protein	NA	A0A2I6PF15	Staphylococcus_phage	100.0	5.1e-41
WP_001128433.1|397153_397519_-	hypothetical protein	NA	A0A2I6PF07	Staphylococcus_phage	100.0	2.4e-63
WP_001036302.1|397573_397789_+	hypothetical protein	NA	A0A2I6PDN5	Staphylococcus_phage	100.0	1.3e-32
WP_001124190.1|397813_398077_+	helix-turn-helix domain-containing protein	NA	A0A2I6PDM6	Staphylococcus_phage	100.0	1.1e-44
WP_001285963.1|398089_398251_+	DUF1270 family protein	NA	A0A2I6PEZ9	Staphylococcus_phage	100.0	5.0e-21
WP_000175000.1|398329_398653_+	hypothetical protein	NA	A0A2I6PDL5	Staphylococcus_phage	100.0	1.3e-52
WP_000279445.1|398667_399030_+	hypothetical protein	NA	A0A2K9VBV1	Staphylococcus_phage	100.0	6.4e-56
WP_000762532.1|399026_400193_+	DUF2800 domain-containing protein	NA	A0A2I6PDL4	Staphylococcus_phage	100.0	8.3e-222
WP_000645042.1|400218_400776_+	DUF2815 family protein	NA	A0A2I6PF05	Staphylococcus_phage	100.0	1.8e-97
WP_001796208.1|400844_402797_+	DNA polymerase	NA	A0A2I6PF18	Staphylococcus_phage	100.0	0.0e+00
WP_001164628.1|402809_402995_+	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	98.4	2.1e-26
WP_000113981.1|402994_403396_+	PVL family protein	NA	A0A2I6PF14	Staphylococcus_phage	100.0	1.2e-68
WP_000111488.1|403395_403653_+	DUF3310 domain-containing protein	NA	A0A2I6PF10	Staphylococcus_phage	100.0	5.7e-43
WP_031796775.1|403655_403856_+	hypothetical protein	NA	A0A2I6PF32	Staphylococcus_phage	98.5	3.7e-29
WP_000178883.1|403864_404113_+	hypothetical protein	NA	A0A2I6PF06	Staphylococcus_phage	100.0	3.6e-42
WP_000693993.1|404127_404334_+	hypothetical protein	NA	A0A0N9BAW9	Staphylococcus_phage	97.1	8.7e-34
WP_000695771.1|404336_404744_+	hypothetical protein	NA	M9NST1	Staphylococcus_phage	98.5	2.6e-74
WP_031794818.1|404740_404935_+	hypothetical protein	NA	A0A0U2A067	Staphylococcus_phage	98.4	6.3e-26
WP_031796778.1|404931_405369_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031886310.1|405365_405650_+	hypothetical protein	NA	Q9G014	Staphylococcus_virus	95.7	3.7e-43
WP_031886311.1|405642_405894_+	DUF1024 family protein	NA	M9NRI5	Staphylococcus_phage	97.6	7.1e-38
WP_001061834.1|406233_406740_+	hypothetical protein	NA	G4KNP5	Staphylococcus_phage	100.0	1.0e-91
WP_031886312.1|406776_406983_+	DUF1381 domain-containing protein	NA	S4V684	Staphylococcus_phage	98.5	4.9e-29
WP_000141184.1|406979_407174_+	hypothetical protein	NA	A0A2I6PDC3	Staphylococcus_phage	100.0	1.3e-28
WP_001072795.1|407170_407374_+	hypothetical protein	NA	A0A0N9BAX5	Staphylococcus_phage	100.0	5.2e-31
WP_031767608.1|407366_407519_+	transcriptional regulator	NA	Q4ZCN4	Staphylococcus_virus	98.0	3.4e-19
WP_031886313.1|407586_407787_+	DUF1514 family protein	NA	A0A2I6PF41	Staphylococcus_phage	98.5	1.1e-25
WP_031886314.1|407838_410286_+	phage-like protein	NA	A0A2I6PDP5	Staphylococcus_phage	98.8	0.0e+00
WP_078098968.1|410387_410492_-	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	94.1	1.8e-11
WP_000665205.1|410625_410916_+	VRR-NUC domain-containing protein	NA	U5U7A3	Staphylococcus_phage	100.0	4.9e-51
WP_078098969.1|410896_412264_+	DEAD/DEAH box helicase	NA	A0A2I6PE95	Staphylococcus_phage	99.8	6.6e-263
WP_031883903.1|412276_412714_+	transcriptional regulator	NA	A0A2I6PEB8	Staphylococcus_phage	100.0	1.0e-76
WP_015978060.1|412870_413185_+	HNH endonuclease	NA	Q4ZCU3	Staphylococcus_virus	100.0	2.5e-56
WP_000778933.1|413312_413618_+|terminase	terminase	terminase	A0A2I6PEQ6	Staphylococcus_phage	100.0	2.9e-49
WP_031886315.1|413607_415299_+|terminase	terminase large subunit	terminase	A0A2I6PE99	Staphylococcus_phage	99.6	0.0e+00
WP_001100669.1|415303_416542_+|portal	phage portal protein	portal	A0A2K9VBP0	Staphylococcus_phage	100.0	6.9e-235
WP_031886316.1|416525_417299_+|protease	Clp protease ClpP	protease	A0A2I6PE26	Staphylococcus_phage	97.3	4.3e-134
WP_031886317.1|417310_418474_+|capsid	phage major capsid protein	capsid	A0A0K1LKB5	Staphylococcus_phage	99.5	6.8e-216
WP_031883908.1|418542_418821_+|head,tail	phage gp6-like head-tail connector protein	head,tail	R4WAL3	Staphylococcus_phage	98.9	3.9e-45
WP_000395498.1|418832_419165_+	hypothetical protein	NA	A0A2I6PES3	Staphylococcus_phage	100.0	4.1e-57
WP_000110015.1|419161_419563_+	hypothetical protein	NA	A0A0K1LL98	Staphylococcus_phage	99.2	4.0e-67
WP_001028464.1|419563_419959_+	DUF3168 domain-containing protein	NA	A0A0K1LKC0	Staphylococcus_phage	96.2	1.7e-65
WP_031886318.1|419993_420635_+|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	97.7	8.0e-118
WP_031886319.1|420726_421182_+	Ig domain-containing protein	NA	A0A2I6PF45	Staphylococcus_phage	99.3	1.1e-76
WP_000589165.1|421239_421590_+	hypothetical protein	NA	A0A2I6PDE6	Staphylococcus_phage	100.0	1.1e-55
WP_000438833.1|421631_421790_+	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_031902437.1|421803_428004_+|tail	phage tail tape measure protein	tail	A0A2K9VBQ5	Staphylococcus_phage	98.7	0.0e+00
WP_031886321.1|428003_428828_+|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	98.9	7.8e-158
WP_031886322.1|428836_430420_+	peptidase	NA	Q8SDP1	Staphylococcus_virus	99.8	1.0e-307
WP_000179860.1|430419_430710_+	hypothetical protein	NA	A0A2I6PF46	Staphylococcus_phage	100.0	2.1e-49
WP_000429551.1|430725_432636_+	minor structural protein	NA	A0A2I6PF35	Staphylococcus_phage	100.0	0.0e+00
WP_031886323.1|432635_434102_+|plate	BppU family phage baseplate upper protein	plate	A0A2I6PEI6	Staphylococcus_phage	93.2	4.2e-255
WP_001166599.1|434101_434491_+	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_000916020.1|434483_434648_+	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_000466784.1|434693_434993_+	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_031883911.1|435128_435566_+|holin	phage holin	holin	B2ZZ05	Staphylococcus_phage	99.3	1.2e-72
WP_031883912.1|435546_436992_+	CHAP domain-containing protein	NA	A0A0H4ITZ3	Staphylococcus_phage	96.3	5.5e-284
437526:437543	attR	ATCTTACAAGGGTGGGAT	NA	NA	NA	NA
>prophage 3
NZ_CP019595	Staphylococcus aureus strain GD1677 chromosome, complete genome	2790204	828273	836093	2790204		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|828273_829329_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|829328_830015_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037805.1|829989_830463_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093557.1|830803_831244_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637685.1|831524_832109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062968.1|832207_832921_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|832924_833344_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|833345_834014_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604516.1|834364_834958_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	3.1e-39
WP_001217786.1|834941_836093_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
>prophage 4
NZ_CP019595	Staphylococcus aureus strain GD1677 chromosome, complete genome	2790204	848063	862325	2790204		uncultured_Caudovirales_phage(50.0%)	13	NA	NA
WP_000663034.1|848063_849122_+	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	26.9	1.5e-20
WP_000197271.1|849280_849823_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429003.1|850504_851422_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.8e-07
WP_014936998.1|851512_851620_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193750.1|851691_853197_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930016.1|853537_854038_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	66.2	2.7e-52
WP_001068490.1|854057_854924_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|855725_856124_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|856086_858192_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|858311_859283_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000876311.1|859652_860624_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	80.2	7.8e-141
WP_001245567.1|860610_861567_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.6e-05
WP_000616865.1|861563_862325_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.1	7.2e-17
>prophage 5
NZ_CP019595	Staphylococcus aureus strain GD1677 chromosome, complete genome	2790204	1034182	1086197	2790204	tRNA,holin,protease,bacteriocin	Streptococcus_phage(40.0%)	53	NA	NA
WP_000448934.1|1034182_1035172_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000258003.1|1035466_1035862_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_001217731.1|1036232_1036952_+	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000959279.1|1037072_1038059_+	competence protein CoiA	NA	NA	NA	NA	NA
WP_000082727.1|1038106_1039915_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.4	1.2e-46
WP_000896697.1|1040374_1041181_-	DsbA family protein	NA	NA	NA	NA	NA
WP_000214070.1|1041203_1041569_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000224612.1|1041672_1042266_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_001242104.1|1042451_1042799_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001077683.1|1042815_1043451_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001270834.1|1043467_1044277_+	NAD kinase	NA	NA	NA	NA	NA
WP_000669942.1|1044273_1045128_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000062407.1|1045148_1046534_+	magnesium transporter	NA	NA	NA	NA	NA
WP_000395153.1|1046543_1048388_+	sodium:proton antiporter	NA	NA	NA	NA	NA
WP_000933200.1|1048665_1049436_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000933105.1|1049632_1050718_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000570705.1|1051059_1052628_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_000889181.1|1052769_1053528_+	esterase family protein	NA	NA	NA	NA	NA
WP_000600387.1|1053721_1054231_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001794241.1|1054343_1055552_-	MFS transporter	NA	NA	NA	NA	NA
WP_000258650.1|1055511_1056687_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_031886269.1|1057117_1058602_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_072434963.1|1058582_1058843_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001049947.1|1058842_1060405_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.0	3.8e-36
WP_000928413.1|1060706_1061510_+	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_014937014.1|1061728_1064053_+|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.1e-11
WP_000021872.1|1064069_1065428_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000414168.1|1065566_1067078_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000287265.1|1067566_1068136_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000876826.1|1068345_1068564_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000668814.1|1068644_1069631_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000214898.1|1069829_1070006_+	YkvS family protein	NA	NA	NA	NA	NA
WP_001033867.1|1070020_1070623_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_099119695.1|1070922_1071000_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
WP_000790905.1|1071634_1071919_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000870811.1|1071962_1073927_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000668623.1|1073929_1074250_+	YxeA family protein	NA	NA	NA	NA	NA
WP_000571192.1|1074246_1074888_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	1.0e-19
WP_001796515.1|1074975_1075266_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157958947.1|1075355_1075544_+	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA	NA
WP_000766009.1|1075632_1075989_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001081332.1|1076480_1077440_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001794249.1|1077488_1077620_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001825521.1|1077683_1077974_-	TM2 domain-containing protein	NA	NA	NA	NA	NA
WP_000620945.1|1078063_1078615_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000070966.1|1078665_1079604_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_072357920.1|1079754_1079832_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001807807.1|1079935_1081147_+	isochorismate synthase	NA	NA	NA	NA	NA
WP_000526673.1|1081133_1082807_+	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
WP_000150215.1|1082793_1083597_+	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
WP_000184947.1|1083589_1084411_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
WP_000284455.1|1084648_1084978_-	staphostatin B	NA	NA	NA	NA	NA
WP_001088778.1|1085015_1086197_-|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
>prophage 6
NZ_CP019595	Staphylococcus aureus strain GD1677 chromosome, complete genome	2790204	1105980	1114453	2790204		Synechococcus_phage(33.33%)	9	NA	NA
WP_001807816.1|1105980_1106463_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010409.1|1106449_1107574_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174055.1|1107577_1108282_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	2.1e-47
WP_000848351.1|1108281_1108545_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666799.1|1108546_1109218_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_031886271.1|1109210_1111400_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.9	1.3e-140
WP_000483707.1|1111378_1112863_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	8.5e-46
WP_000030815.1|1112855_1113884_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.1	2.9e-61
WP_000238668.1|1113886_1114453_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	2.7e-29
>prophage 7
NZ_CP019595	Staphylococcus aureus strain GD1677 chromosome, complete genome	2790204	1370638	1377398	2790204	capsid	Staphylococcus_phage(71.43%)	11	NA	NA
WP_001807853.1|1370638_1370836_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	50.0	9.9e-11
WP_074347689.1|1371522_1371750_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	72.1	1.9e-18
WP_001002341.1|1372050_1372257_+	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	55.2	5.5e-12
WP_001788716.1|1372957_1373068_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000006110.1|1373460_1373646_+	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
WP_000477489.1|1374156_1374573_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033855983.1|1374696_1374960_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000974166.1|1375004_1375589_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	42.6	4.4e-30
WP_001215406.1|1375652_1375826_-	hypothetical protein	NA	A0A059NT83	Lactococcus_phage	51.9	3.6e-09
WP_000585092.1|1376237_1376489_+	hypothetical protein	NA	NA	NA	NA	NA
WP_074347678.1|1376558_1377398_+|capsid	minor capsid protein	capsid	A0A1J0MFV1	Staphylococcus_phage	50.7	1.1e-29
>prophage 8
NZ_CP019595	Staphylococcus aureus strain GD1677 chromosome, complete genome	2790204	1649571	1657883	2790204	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1649571_1650357_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924214.1|1650482_1651373_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062171.1|1651382_1652729_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
WP_000683941.1|1652842_1653943_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	1.0e-08
WP_000624563.1|1653945_1654623_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1654753_1655860_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217255.1|1656083_1657883_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.5e-54
>prophage 9
NZ_CP019595	Staphylococcus aureus strain GD1677 chromosome, complete genome	2790204	1727308	1736351	2790204	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1727308_1727827_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000595008.1|1727848_1730122_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	2.1e-64
WP_000749801.1|1730324_1732604_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1732878_1733139_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1733157_1734297_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019177.1|1734319_1735345_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005766.1|1735346_1736351_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 10
NZ_CP019595	Staphylococcus aureus strain GD1677 chromosome, complete genome	2790204	1860086	1907931	2790204	tRNA,protease,transposase	Staphylococcus_phage(91.89%)	47	NA	NA
WP_031886264.1|1860086_1866635_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	95.1	5.7e-296
WP_000836471.1|1866958_1867270_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	95.1	1.3e-49
WP_001108715.1|1867291_1869706_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.1	0.0e+00
WP_001025064.1|1869996_1871178_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	9.6e-218
WP_000526541.1|1871287_1872241_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	99.3	6.4e-79
WP_000764426.1|1872237_1872801_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	95.7	7.3e-99
WP_000757543.1|1872919_1873321_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1873893_1874721_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_014937042.1|1874723_1874843_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|1874954_1875956_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008555.1|1876083_1876542_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	97.4	4.1e-68
WP_001159034.1|1876554_1877736_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	1.9e-226
WP_000493892.1|1877746_1878379_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_000384182.1|1878385_1879417_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.1	3.1e-196
WP_001261673.1|1879909_1881412_-	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	5.0e-30
WP_000221190.1|1882054_1882369_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	1.3e-52
WP_000989103.1|1882368_1883661_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	94.7	7.5e-216
WP_001032832.1|1883747_1884602_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1884877_1885102_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671058.1|1885300_1885771_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	84.6	5.0e-69
WP_031886265.1|1885883_1886327_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030475.1|1886313_1886757_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	78.6	6.4e-50
WP_001168915.1|1887054_1887690_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000492903.1|1887856_1888477_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001096494.1|1889039_1889753_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091443.1|1890011_1890314_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200546.1|1890568_1890934_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	98.3	6.9e-58
WP_000623484.1|1890930_1891284_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	82.1	2.3e-18
WP_000453302.1|1891533_1892367_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.9	1.7e-157
WP_000366160.1|1892578_1893487_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.3	1.3e-137
WP_000933822.1|1893611_1894805_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109913.1|1895176_1896769_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.6	0.0e+00
WP_016187361.1|1897065_1897812_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.0	7.8e-141
WP_000672013.1|1897816_1898290_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_000718107.1|1898355_1898613_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778553.1|1898609_1899611_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	86.5	3.3e-163
WP_000348381.1|1899615_1901094_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	95.5	6.7e-277
WP_016187363.1|1901252_1901708_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	96.6	8.3e-77
WP_001825423.1|1902010_1902673_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	87.7	2.8e-49
WP_000070644.1|1902753_1903749_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	94.8	1.3e-69
WP_000669036.1|1903824_1904451_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	84.1	9.9e-81
WP_000627549.1|1904491_1904836_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	96.5	5.1e-55
WP_000414230.1|1904933_1905506_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	3.5e-24
WP_000864133.1|1905703_1906261_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	98.1	1.1e-78
WP_000375476.1|1906630_1906807_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000070813.1|1906817_1907201_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000196442.1|1907649_1907931_-|transposase	IS3 family transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	63.4	3.2e-23
