assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002088995.1_ASM208899v1	NZ_CP019590	Staphylococcus aureus strain C2406 chromosome, complete genome	1	434238-434338	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|70aa|up_9|NZ_CP019590.1_425810_426020_-,NA|128aa|up_7|NZ_CP019590.1_426844_427228_-,NA|98aa|up_5|NZ_CP019590.1_428181_428475_-,NA|34aa|up_0|NZ_CP019590.1_433462_433564_+,NA|221aa|down_1|NZ_CP019590.1_435428_436091_-,NA|179aa|down_7|NZ_CP019590.1_442182_442719_-	NA|70aa|up_9|NZ_CP019590.1_425810_426020_-	NA	NA|194aa|up_8|NZ_CP019590.1_426197_426779_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_7|NZ_CP019590.1_426844_427228_-	NA	NA|209aa|up_6|NZ_CP019590.1_427482_428109_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|98aa|up_5|NZ_CP019590.1_428181_428475_-	NA	NA|508aa|up_4|NZ_CP019590.1_428553_430077_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NZ_CP019590.1_430092_430662_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NZ_CP019590.1_431153_431909_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NZ_CP019590.1_431989_433378_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_0|NZ_CP019590.1_433462_433564_+	NA	NA|319aa|down_0|NZ_CP019590.1_434354_435311_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|NZ_CP019590.1_435428_436091_-	NA	NA|136aa|down_2|NZ_CP019590.1_436233_436641_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP019590.1_437153_437732_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP019590.1_437731_439000_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP019590.1_439037_440504_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP019590.1_440528_442070_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP019590.1_442182_442719_-	NA	NA|235aa|down_8|NZ_CP019590.1_443111_443816_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP019590.1_444214_444487_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_002088995.1_ASM208899v1	NZ_CP019590	Staphylococcus aureus strain C2406 chromosome, complete genome	2	678577-678669	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|36aa|up_3|NZ_CP019590.1_675061_675169_+,NA|169aa|down_4|NZ_CP019590.1_682416_682923_+,NA|239aa|down_5|NZ_CP019590.1_683084_683801_+	NA|313aa|up_9|NZ_CP019590.1_669263_670202_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|NZ_CP019590.1_670412_670949_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|NZ_CP019590.1_671117_671594_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|NZ_CP019590.1_671633_672929_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_5|NZ_CP019590.1_672956_673478_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|NZ_CP019590.1_673976_674987_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|NZ_CP019590.1_675061_675169_+	NA	NA|128aa|up_2|NZ_CP019590.1_675294_675678_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NZ_CP019590.1_675674_677336_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NZ_CP019590.1_677723_678359_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|276aa|down_0|NZ_CP019590.1_678797_679625_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NZ_CP019590.1_679772_680723_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NZ_CP019590.1_680777_681497_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NZ_CP019590.1_681480_682281_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NZ_CP019590.1_682416_682923_+	NA	NA|239aa|down_5|NZ_CP019590.1_683084_683801_+	NA	NA|263aa|down_6|NZ_CP019590.1_683969_684758_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NZ_CP019590.1_685008_685383_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|179aa|down_8|NZ_CP019590.1_687098_687635_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|168aa|down_9|NZ_CP019590.1_687615_688119_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]
GCF_002088995.1_ASM208899v1	NZ_CP019590	Staphylococcus aureus strain C2406 chromosome, complete genome	3	854387-854472	3	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	5	854417-854442|854417-854442|854417-854442|854417-854442|854417-854442	NZ_CP019590.1_817379-817354|NZ_CP019590.1_2836293-2836318|NZ_CP019590.1_2836349-2836374|NZ_CP019590.1_817435-817410|NZ_CP019590.1_960408-960383	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|280aa|up_9|NZ_CP019590.1_841639_842479_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP019590.1_842652_843303_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP019590.1_843299_843536_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP019590.1_843804_845790_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP019590.1_845797_848644_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP019590.1_849305_850238_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP019590.1_850243_851083_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP019590.1_851090_851576_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP019590.1_851583_853023_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP019590.1_853089_854025_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP019590.1_854904_855816_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP019590.1_855812_856808_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP019590.1_856917_857862_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP019590.1_858435_859023_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_CP019590.1_859265_860168_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NZ_CP019590.1_860869_861499_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NZ_CP019590.1_862140_863154_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NZ_CP019590.1_863206_864217_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NZ_CP019590.1_864355_865546_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NZ_CP019590.1_865667_866429_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_002088995.1_ASM208899v1	NZ_CP019590	Staphylococcus aureus strain C2406 chromosome, complete genome	4	897598-897679	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	897622-897655|897622-897655	NZ_CP019590.1_1386615-1386582|NZ_CP019590.1_1475774-1475807	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|38aa|up_1|NZ_CP019590.1_896500_896614_+,NA	NA|206aa|up_9|NZ_CP019590.1_891355_891973_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|NZ_CP019590.1_892127_892622_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|NZ_CP019590.1_893020_893443_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|NZ_CP019590.1_893590_894307_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|NZ_CP019590.1_894389_894929_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|NZ_CP019590.1_895078_895399_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|NZ_CP019590.1_895542_895899_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|NZ_CP019590.1_896056_896437_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|NZ_CP019590.1_896500_896614_+	NA	NA|293aa|up_0|NZ_CP019590.1_896615_897494_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP019590.1_898235_898622_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP019590.1_898614_898911_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP019590.1_899160_900186_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP019590.1_900178_900874_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP019590.1_900891_901713_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|407aa|down_5|NZ_CP019590.1_901855_903076_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|243aa|down_6|NZ_CP019590.1_903163_903892_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|243aa|down_7|NZ_CP019590.1_903915_904644_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|153aa|down_8|NZ_CP019590.1_904660_905119_-	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|111aa|down_9|NZ_CP019590.1_905130_905463_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins
GCF_002088995.1_ASM208899v1	NZ_CP019590	Staphylococcus aureus strain C2406 chromosome, complete genome	5	960409-960691	1	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAAGNCAGCTNNNNANANNNTGCAAGTTGG	30	2	6	960439-960464|960439-960464|960439-960464|960439-960464|960553-960578|960553-960578	NZ_CP019590.1_960383-960408|NZ_CP019590.1_817354-817379|NZ_CP019590.1_2836318-2836293|NZ_CP019590.1_2836374-2836349|NZ_CP019590.1_854498-854473|NZ_CP019590.1_395571-395596	NA	4	4	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|499aa|up_9|NZ_CP019590.1_949297_950794_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|110aa|up_8|NZ_CP019590.1_950786_951116_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|NZ_CP019590.1_951127_951556_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|NZ_CP019590.1_951548_953954_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|NZ_CP019590.1_954084_954468_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|NZ_CP019590.1_954531_955125_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|NZ_CP019590.1_955540_955918_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|NZ_CP019590.1_956279_957407_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|NZ_CP019590.1_957714_958905_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|NZ_CP019590.1_959013_960258_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|NZ_CP019590.1_960760_961690_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|NZ_CP019590.1_961931_963311_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|NZ_CP019590.1_963300_964506_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|NZ_CP019590.1_964856_966188_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|NZ_CP019590.1_966512_967088_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|NZ_CP019590.1_967092_967617_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|NZ_CP019590.1_967632_968208_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|NZ_CP019590.1_968367_971844_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|NZ_CP019590.1_971844_975498_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|NZ_CP019590.1_975663_976566_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_002088995.1_ASM208899v1	NZ_CP019590	Staphylococcus aureus strain C2406 chromosome, complete genome	6	1094081-1094168	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCTAACAACTAAAAGTTGTAAGG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|40aa|up_0|NZ_CP019590.1_1093957_1094077_+,NA|45aa|down_0|NZ_CP019590.1_1094177_1094312_-,NA|432aa|down_1|NZ_CP019590.1_1094463_1095759_+	NA|730aa|up_9|NZ_CP019590.1_1082535_1084725_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_8|NZ_CP019590.1_1084703_1086188_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_7|NZ_CP019590.1_1086180_1087209_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_6|NZ_CP019590.1_1087211_1087778_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_5|NZ_CP019590.1_1087792_1089271_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_4|NZ_CP019590.1_1089292_1090540_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_3|NZ_CP019590.1_1090804_1091611_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_2|NZ_CP019590.1_1091603_1093004_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_1|NZ_CP019590.1_1093018_1093594_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|40aa|up_0|NZ_CP019590.1_1093957_1094077_+	NA	NA|45aa|down_0|NZ_CP019590.1_1094177_1094312_-	NA	NA|432aa|down_1|NZ_CP019590.1_1094463_1095759_+	NA	NA|391aa|down_2|NZ_CP019590.1_1096183_1097356_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_3|NZ_CP019590.1_1097409_1097952_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_4|NZ_CP019590.1_1098105_1098372_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_5|NZ_CP019590.1_1098374_1100093_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_6|NZ_CP019590.1_1100329_1100563_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_7|NZ_CP019590.1_1100760_1102122_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_8|NZ_CP019590.1_1102118_1103138_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|221aa|down_9|NZ_CP019590.1_1103270_1103933_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCF_002088995.1_ASM208899v1	NZ_CP019590	Staphylococcus aureus strain C2406 chromosome, complete genome	7	2036115-2036193	6	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,DinG,csa3,WYL	Unclear	TGTTGGGGCCCCGCCAACCTGCA	23	1	6	2036138-2036170|2036138-2036170|2036138-2036170|2036138-2036170|2036138-2036170|2036138-2036170	NZ_CP019590.1_854453-854485|NZ_CP019590.1_1178444-1178412|NZ_CP019590.1_1386569-1386537|NZ_CP019590.1_1701053-1701085|NZ_CP019590.1_2670943-2670975|NZ_CP019590.1_1475820-1475852	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|92aa|up_6|NZ_CP019590.1_2030309_2030585_+,NA|129aa|up_1|NZ_CP019590.1_2034570_2034957_-,NA|138aa|down_1|NZ_CP019590.1_2037935_2038349_-,NA|37aa|down_2|NZ_CP019590.1_2038377_2038488_-,NA|31aa|down_6|NZ_CP019590.1_2041493_2041586_-	NA|419aa|up_9|NZ_CP019590.1_2028232_2029489_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_8|NZ_CP019590.1_2029491_2029692_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|NZ_CP019590.1_2029838_2030303_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|NZ_CP019590.1_2030309_2030585_+	NA	NA|406aa|up_5|NZ_CP019590.1_2030862_2032080_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|NZ_CP019590.1_2032195_2032825_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|NZ_CP019590.1_2032814_2033858_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|NZ_CP019590.1_2033854_2034556_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|NZ_CP019590.1_2034570_2034957_-	NA	NA|253aa|up_0|NZ_CP019590.1_2035173_2035932_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|NZ_CP019590.1_2036459_2037446_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|NZ_CP019590.1_2037935_2038349_-	NA	NA|37aa|down_2|NZ_CP019590.1_2038377_2038488_-	NA	NA|244aa|down_3|NZ_CP019590.1_2038573_2039305_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_4|NZ_CP019590.1_2039306_2040620_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_5|NZ_CP019590.1_2040911_2041412_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|down_6|NZ_CP019590.1_2041493_2041586_-	NA	DEDDh|185aa|down_7|NZ_CP019590.1_2041800_2042355_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_8|NZ_CP019590.1_2042422_2043493_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_9|NZ_CP019590.1_2043739_2044270_-	pfam11667, DUF3267, Putative zincin peptidase
GCF_002088995.1_ASM208899v1	NZ_CP019590	Staphylococcus aureus strain C2406 chromosome, complete genome	8	2271065-2271215	7	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|NZ_CP019590.1_2265939_2266170_-,NA|364aa|up_0|NZ_CP019590.1_2269955_2271047_+,NA|35aa|down_0|NZ_CP019590.1_2271546_2271651_-,NA|31aa|down_2|NZ_CP019590.1_2273762_2273855_+	NA|237aa|up_9|NZ_CP019590.1_2261549_2262260_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP019590.1_2262380_2262824_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP019590.1_2263023_2263437_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP019590.1_2263894_2265268_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP019590.1_2265939_2266170_-	NA	NA|313aa|up_4|NZ_CP019590.1_2266200_2267139_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP019590.1_2267573_2268239_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP019590.1_2268390_2268711_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|326aa|up_1|NZ_CP019590.1_2268712_2269690_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP019590.1_2269955_2271047_+	NA	NA|35aa|down_0|NZ_CP019590.1_2271546_2271651_-	NA	NA|379aa|down_1|NZ_CP019590.1_2272337_2273474_-	pfam02037, SAP, SAP domain	NA|31aa|down_2|NZ_CP019590.1_2273762_2273855_+	NA	NA|286aa|down_3|NZ_CP019590.1_2274559_2275417_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_CP019590.1_2275484_2276267_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NZ_CP019590.1_2276498_2278304_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NZ_CP019590.1_2278984_2280523_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NZ_CP019590.1_2280557_2282690_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NZ_CP019590.1_2282701_2283136_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NZ_CP019590.1_2283135_2284242_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_002088995.1_ASM208899v1	NZ_CP019590	Staphylococcus aureus strain C2406 chromosome, complete genome	9	2394983-2395176	2	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	13	2395006-2395038|2395006-2395038|2395006-2395038|2395006-2395038|2395006-2395038|2395062-2395097|2395062-2395097|2395062-2395097|2395062-2395097|2395121-2395153|2395121-2395153|2395121-2395153|2395121-2395153	NZ_CP019590.1_854453-854485|NZ_CP019590.1_1178444-1178412|NZ_CP019590.1_1386569-1386537|NZ_CP019590.1_1475820-1475852|NZ_CP019590.1_2670943-2670975|NZ_CP019590.1_1178391-1178356|NZ_CP019590.1_1879540-1879505|NZ_CP019590.1_1700992-1701027|NZ_CP019590.1_2046941-2046976|NZ_CP019590.1_854453-854485|NZ_CP019590.1_1178444-1178412|NZ_CP019590.1_1386569-1386537|NZ_CP019590.1_2670943-2670975	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|55aa|up_9|NZ_CP019590.1_2385510_2385675_+,NA|106aa|up_8|NZ_CP019590.1_2385919_2386237_+,NA|84aa|up_5|NZ_CP019590.1_2391361_2391613_+,NA|57aa|up_0|NZ_CP019590.1_2394752_2394923_+,NA	NA|55aa|up_9|NZ_CP019590.1_2385510_2385675_+	NA	NA|106aa|up_8|NZ_CP019590.1_2385919_2386237_+	NA	NA|1056aa|up_7|NZ_CP019590.1_2386423_2389591_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP019590.1_2389707_2390973_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP019590.1_2391361_2391613_+	NA	NA|255aa|up_4|NZ_CP019590.1_2391604_2392369_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP019590.1_2392530_2392971_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP019590.1_2392963_2394175_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP019590.1_2394276_2394627_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP019590.1_2394752_2394923_+	NA	NA|341aa|down_0|NZ_CP019590.1_2395317_2396340_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP019590.1_2396359_2396959_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP019590.1_2396965_2397199_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP019590.1_2397204_2397651_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP019590.1_2397664_2398150_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP019590.1_2398146_2399406_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP019590.1_2399468_2399963_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP019590.1_2399964_2400471_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP019590.1_2400501_2401506_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP019590.1_2401675_2402281_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
