The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP020463	Staphylococcus epidermidis strain 1457 chromosome, complete genome	2454929	998722	1029331	2454929	integrase	Staphylococcus_phage(82.14%)	37	988851:988867	1029853:1029869
988851:988867	attL	TAAAGCAACCCCTATAT	NA	NA	NA	NA
WP_002456422.1|998722_999217_-|integrase	site-specific integrase	integrase	B7T092	Staphylococcus_virus	76.1	3.8e-67
WP_002456423.1|999375_999588_+	hypothetical protein	NA	A0A2H4JCA1	uncultured_Caudovirales_phage	72.9	7.3e-20
WP_002456424.1|999967_1000702_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002456425.1|1000783_1000939_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002456426.1|1001228_1001516_-	hypothetical protein	NA	A0A2H4JGN1	uncultured_Caudovirales_phage	50.0	5.5e-18
WP_002456427.1|1001677_1002343_-	hypothetical protein	NA	A0A2H4J5B8	uncultured_Caudovirales_phage	41.8	7.0e-08
WP_002456428.1|1002437_1002584_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002456429.1|1003593_1005018_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	63.9	6.6e-173
WP_001829851.1|1005007_1006009_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	50.2	6.9e-92
WP_001829824.1|1006005_1006257_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	81.9	1.9e-35
WP_080280822.1|1006315_1006792_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	58.1	5.6e-44
WP_002456431.1|1006778_1007564_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	71.3	2.0e-99
WP_001832979.1|1007794_1009387_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	83.2	2.7e-268
WP_001829830.1|1009756_1010956_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	85.4	4.1e-192
WP_002468818.1|1011058_1011967_+	hypothetical protein	NA	A0A2H4PQQ8	Staphylococcus_phage	80.6	1.8e-102
WP_002456435.1|1012146_1012983_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	68.6	6.1e-110
WP_002469577.1|1013267_1013423_+	hypothetical protein	NA	A0A146ICT8	Staphylococcus_phage	79.6	5.2e-15
WP_001830729.1|1013749_1014103_-	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	32.5	8.5e-05
WP_001830726.1|1014099_1014465_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	57.0	4.1e-34
WP_002493962.1|1014503_1014812_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001830731.1|1015088_1015802_+	transaldolase	NA	M1PR54	Cyanophage	37.4	4.1e-22
WP_001830728.1|1015941_1016385_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	42.9	3.1e-20
WP_001830734.1|1016371_1016815_-	competence protein ComK	NA	NA	NA	NA	NA
WP_001830724.1|1016820_1017300_-	sigma-70 family RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	42.3	2.7e-25
WP_010959195.1|1017355_1017475_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001830737.1|1017507_1017723_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001830727.1|1018100_1018952_+	autolysin	NA	A0A1J0MFB0	Staphylococcus_phage	35.6	1.0e-32
WP_080003818.1|1019290_1020784_+	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	65.6	2.5e-13
WP_002440254.1|1021220_1022264_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	66.5	3.4e-134
WP_001830723.1|1022270_1022903_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	77.1	5.5e-87
WP_002440250.1|1022915_1024097_+	GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	75.3	1.8e-176
WP_001830736.1|1024109_1024571_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	84.2	1.2e-59
WP_002468815.1|1024618_1025620_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	70.0	1.5e-131
WP_032606475.1|1025862_1026690_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001830809.1|1027179_1027581_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001830894.1|1027817_1028381_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	66.5	1.9e-67
WP_001830802.1|1028377_1029331_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	84.7	3.3e-67
1029853:1029869	attR	ATATAGGGGTTGCTTTA	NA	NA	NA	NA
>prophage 2
NZ_CP020463	Staphylococcus epidermidis strain 1457 chromosome, complete genome	2454929	1754336	1762806	2454929		Synechococcus_phage(33.33%)	9	NA	NA
WP_001831672.1|1754336_1754903_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.0	6.1e-29
WP_001831685.1|1754902_1755934_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.4	2.1e-64
WP_001831721.1|1755926_1757411_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.9	9.4e-45
WP_002470440.1|1757389_1759579_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	40.4	1.1e-139
WP_001831727.1|1759571_1760243_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_001831728.1|1760244_1760505_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_001831723.1|1760504_1761209_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	H8ZMN3	Synechococcus_phage	42.5	1.6e-47
WP_032606432.1|1761209_1762337_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_001831735.1|1762323_1762806_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	43.3	5.2e-21
>prophage 3
NZ_CP020463	Staphylococcus epidermidis strain 1457 chromosome, complete genome	2454929	1794045	1861504	2454929	transposase,head,integrase,plate,terminase,holin,capsid,portal,protease,tail	Staphylococcus_phage(57.63%)	79	1792482:1792498	1842816:1842832
1792482:1792498	attL	GTTTTTTGTTTATAACT	NA	NA	NA	NA
WP_032606340.1|1794045_1795509_-	CHAP domain-containing protein	NA	A0A2H4J3K5	uncultured_Caudovirales_phage	95.9	2.3e-290
WP_002502079.1|1795483_1795894_-|holin	phage holin	holin	A0A0N9SI57	Staphylococcus_phage	86.8	2.9e-57
WP_032606342.1|1795957_1796356_-	YxeA family protein	NA	A0A2H4J8T4	uncultured_Caudovirales_phage	100.0	5.7e-66
WP_002502077.1|1796513_1796921_-	hypothetical protein	NA	A0A2H4J3L4	uncultured_Caudovirales_phage	99.3	5.7e-69
WP_002502076.1|1796907_1797333_-	hypothetical protein	NA	A0A0N9S016	Staphylococcus_phage	99.3	6.7e-73
WP_032606043.1|1797329_1797953_-	poly-gamma-glutamate hydrolase family protein	NA	A0A0N9SKG5	Staphylococcus_phage	98.1	1.4e-114
WP_002502074.1|1797957_1799172_-|plate	BppU family phage baseplate upper protein	plate	A0A0N9RRU1	Staphylococcus_phage	100.0	1.3e-209
WP_002502073.1|1799171_1801034_-	DUF2817 domain-containing protein	NA	A0A0N9SJ39	Staphylococcus_phage	100.0	0.0e+00
WP_032606041.1|1801215_1802784_-	peptidase	NA	A0A0N9SH60	Staphylococcus_phage	99.8	6.4e-302
WP_002502070.1|1802784_1803618_-|tail	phage tail family protein	tail	A0A0N7GFH9	Staphylococcus_phage	100.0	2.8e-163
WP_002502068.1|1808359_1808512_-	hypothetical protein	NA	A0A0N9SKE8	Staphylococcus_phage	100.0	1.4e-20
WP_002502067.1|1808544_1808907_-	hypothetical protein	NA	A0A0N9SI62	Staphylococcus_phage	100.0	3.3e-60
WP_002502066.1|1808970_1809156_-	hypothetical protein	NA	A0A0N9STM6	Staphylococcus_phage	100.0	3.2e-27
WP_002502065.1|1809174_1809801_-|tail	phage tail protein	tail	A0A0N9S027	Staphylococcus_phage	100.0	2.0e-113
WP_002502064.1|1809813_1810218_-	hypothetical protein	NA	A0A0N9SKI2	Staphylococcus_phage	100.0	9.3e-72
WP_002502063.1|1810220_1810487_-	hypothetical protein	NA	A0A0N9RRU6	Staphylococcus_phage	98.9	1.2e-43
WP_002502062.1|1810621_1810951_-	hypothetical protein	NA	A0A0N7GFI0	Staphylococcus_phage	100.0	1.2e-58
WP_002502061.1|1810940_1811282_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A0N9SJ46	Staphylococcus_phage	100.0	1.4e-57
WP_002502060.1|1811300_1812626_-|capsid	phage major capsid protein	capsid	A0A0N9S8J3	Staphylococcus_phage	100.0	1.0e-180
WP_002497603.1|1812667_1813225_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JBY8	uncultured_Caudovirales_phage	100.0	4.1e-102
WP_002502059.1|1813214_1814447_-|portal	phage portal protein	portal	A0A2H4J5A4	uncultured_Caudovirales_phage	100.0	2.2e-233
WP_002502058.1|1814446_1814641_-	hypothetical protein	NA	A0A2H4JDZ0	uncultured_Caudovirales_phage	100.0	6.9e-25
WP_002502057.1|1814656_1816408_-|terminase	terminase large subunit	terminase	A0A0N9SI77	Staphylococcus_phage	100.0	0.0e+00
WP_002502056.1|1816400_1816886_-|terminase	phage terminase small subunit P27 family	terminase	A0A0N9STN1	Staphylococcus_phage	100.0	2.3e-85
WP_002502055.1|1817045_1817396_-	HNH endonuclease	NA	A0A2H4J3S4	uncultured_Caudovirales_phage	98.3	3.4e-62
WP_002502054.1|1817878_1818325_-	transcriptional regulator	NA	A0A0N7GFI1	Staphylococcus_phage	98.0	2.3e-79
WP_002502052.1|1818491_1818674_-	hypothetical protein	NA	H9A105	Staphylococcus_phage	90.0	1.1e-24
WP_002499245.1|1818778_1819081_+	hypothetical protein	NA	A0A2H4J741	uncultured_Caudovirales_phage	100.0	1.0e-46
WP_002502051.1|1819177_1819603_-	dUTP diphosphatase	NA	A0A2H4J3S0	uncultured_Caudovirales_phage	100.0	3.0e-73
WP_002502049.1|1819722_1820130_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A0N9SH85	Staphylococcus_phage	100.0	7.1e-72
WP_002502048.1|1820139_1820367_-	DUF3269 family protein	NA	A0A0N9RU83	Staphylococcus_phage	100.0	3.5e-36
WP_032606344.1|1820385_1821351_-	DnaD domain protein	NA	A0A0N7GFI2	Staphylococcus_phage	99.7	8.8e-161
WP_002502046.1|1821373_1821841_-	single-stranded DNA-binding protein	NA	A0A0N9SKG8	Staphylococcus_phage	99.4	3.7e-80
WP_080033657.1|1821841_1822459_-	MBL fold metallo-hydrolase	NA	A0A0N9SI86	Staphylococcus_phage	98.1	2.9e-85
WP_032606345.1|1822539_1823475_-	recombinase RecT	NA	A0A2H4JDY2	uncultured_Caudovirales_phage	98.5	8.5e-145
WP_002502043.1|1823476_1825426_-	AAA family ATPase	NA	A0A0N9SKM4	Staphylococcus_phage	99.1	0.0e+00
WP_002502042.1|1825428_1825692_-	hypothetical protein	NA	A0A0N9RRW1	Staphylococcus_phage	97.7	1.9e-41
WP_002502041.1|1825751_1825943_-	DUF1270 family protein	NA	A0A0N9SJ68	Staphylococcus_phage	85.7	2.6e-16
WP_002502040.1|1826032_1826314_+	hypothetical protein	NA	A0A2H4JEH2	uncultured_Caudovirales_phage	67.7	2.2e-35
WP_002502038.1|1826472_1826682_-	hypothetical protein	NA	A0A0N9SHA3	Staphylococcus_phage	98.6	4.8e-32
WP_002499261.1|1826739_1827078_+	hypothetical protein	NA	A0A2H4JGF0	uncultured_Caudovirales_phage	100.0	8.3e-58
WP_002499263.1|1827382_1827595_+	hypothetical protein	NA	A0A2H4J5G5	uncultured_Caudovirales_phage	100.0	8.9e-34
WP_002502037.1|1827728_1828475_-	oxidoreductase	NA	A0A0N9SI89	Staphylococcus_phage	97.2	2.4e-134
WP_002502036.1|1828525_1829080_+	hypothetical protein	NA	A0A2H4J3U5	uncultured_Caudovirales_phage	95.1	5.5e-83
WP_002499267.1|1829261_1829501_-	helix-turn-helix transcriptional regulator	NA	A0A1Q1PVY0	Staphylococcus_phage	91.1	6.5e-33
WP_002499268.1|1829641_1830262_+	helix-turn-helix domain-containing protein	NA	A0A1Q1PVX8	Staphylococcus_phage	86.4	4.4e-97
WP_080280816.1|1830495_1831635_+	CapA family protein	NA	A0A2H4JG01	uncultured_Caudovirales_phage	99.2	1.2e-220
WP_032606347.1|1831843_1832428_+	hypothetical protein	NA	A0A1W6JQH1	Staphylococcus_phage	83.9	1.4e-28
WP_032606348.1|1832496_1833387_+	hypothetical protein	NA	A0EX19	Staphylococcus_virus	30.7	9.9e-26
WP_032606349.1|1833397_1833577_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032606350.1|1833671_1834721_+|integrase	site-specific integrase	integrase	A0A2H4J492	uncultured_Caudovirales_phage	99.7	1.3e-197
WP_001829272.1|1835121_1835697_-	competence protein ComK	NA	NA	NA	NA	NA
WP_011082643.1|1835723_1835819_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001829292.1|1835911_1836130_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_001829269.1|1836207_1837194_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_001829339.1|1837398_1837584_+	DUF2187 domain-containing protein	NA	NA	NA	NA	NA
WP_001829312.1|1837589_1838192_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002439150.1|1838294_1839845_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_001829321.1|1839938_1841297_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_001829335.1|1841314_1843072_-	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	24.3	4.6e-06
1842816:1842832	attR	GTTTTTTGTTTATAACT	NA	NA	NA	NA
WP_002439148.1|1843282_1844089_-	TerC family protein	NA	S5MAL1	Bacillus_phage	37.7	3.9e-29
WP_002446117.1|1844397_1845960_-	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	26.9	1.7e-36
WP_002439147.1|1845963_1846209_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001829323.1|1846198_1847683_-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_002484726.1|1848203_1849379_+	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_002494345.1|1849356_1850550_+	MFS transporter	NA	NA	NA	NA	NA
WP_002468295.1|1850814_1851324_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001832657.1|1851477_1852233_-	esterase family protein	NA	NA	NA	NA	NA
WP_002456101.1|1852458_1853544_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_001829254.1|1853942_1854713_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_001829249.1|1854934_1855306_-|transposase	IS200/IS605 family transposase	transposase	NA	NA	NA	NA
WP_002494358.1|1855379_1855595_-	recombinase	NA	NA	NA	NA	NA
WP_002485412.1|1856924_1858937_-	ATP-binding cassette domain-containing protein	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	36.3	2.0e-106
WP_080009412.1|1859281_1860004_-	glucose-6-phosphate dehydrogenase	NA	E3SJC5	Synechococcus_phage	35.3	4.3e-27
WP_077431490.1|1860013_1860163_-	hypothetical protein	NA	M4SJ15	Cyanophage	51.0	3.5e-08
WP_102962077.1|1860169_1860673_-	glucose-6-phosphate dehydrogenase	NA	E3SKF6	Synechococcus_phage	32.7	2.2e-14
WP_002467880.1|1860764_1860968_+	hypothetical protein	NA	A0A0N7GFG6	Staphylococcus_phage	77.1	1.5e-09
WP_107362610.1|1861034_1861130_-	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_001829295.1|1861240_1861504_-	DUF4176 domain-containing protein	NA	A0A1X9I6T6	Streptococcus_phage	41.4	1.5e-09
>prophage 4
NZ_CP020463	Staphylococcus epidermidis strain 1457 chromosome, complete genome	2454929	2042515	2052949	2454929		uncultured_Caudovirales_phage(66.67%)	10	NA	NA
WP_001829596.1|2042515_2043295_-	ATP-binding cassette domain-containing protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	33.6	5.1e-18
WP_002438903.1|2043291_2044251_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	100.0	4.1e-17
WP_002487913.1|2044234_2045209_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	100.0	4.1e-166
WP_002501752.1|2045224_2045488_-	hypothetical protein	NA	A0A2H4IYB4	uncultured_Caudovirales_phage	96.7	1.2e-16
WP_001829597.1|2045462_2046431_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	100.0	3.9e-185
WP_001829582.1|2046549_2048655_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	100.0	0.0e+00
WP_001829589.1|2048617_2049016_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	100.0	2.0e-71
WP_001829684.1|2049770_2050646_+	DMT family transporter	NA	NA	NA	NA	NA
WP_001832596.1|2050659_2051160_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	70.1	1.1e-50
WP_002438897.1|2051443_2052949_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	34.0	5.5e-61
>prophage 5
NZ_CP020463	Staphylococcus epidermidis strain 1457 chromosome, complete genome	2454929	2072816	2080078	2454929		Pandoravirus(16.67%)	11	NA	NA
WP_001830323.1|2072816_2073968_-	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	39.6	7.5e-26
WP_001830349.1|2073957_2074545_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_001830328.1|2074841_2075513_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	55.7	4.1e-64
WP_001830341.1|2075517_2075937_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_001830330.1|2075937_2076651_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	44.8	1.6e-55
WP_001830331.1|2076752_2077352_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002485887.1|2077701_2077857_+	hypothetical protein	NA	A0A146ICT8	Staphylococcus_phage	77.6	4.4e-14
WP_010959136.1|2077948_2078047_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001830329.1|2078452_2078890_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001830332.1|2078940_2079414_+	DoxX family protein	NA	NA	NA	NA	NA
WP_001830352.1|2079388_2080078_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.2	3.4e-34
