assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002079285.1_ASM207928v1	NZ_CP014985	Lacticaseibacillus paracasei strain IIA chromosome, complete genome	1	1138809-1138939	1	CRISPRCasFinder	no		DEDDh,DinG,csa3,cas3,WYL,cas9,cas1,cas2,csn2,RT	Orphan	GACCAAAGCCCTGTCTGATATTGCTGAACTCCGAAACGCGCAAACCG	47	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,csa3,cas3,WYL,cas9,cas1,cas2,csn2,RT	NA|354aa|up_9|NZ_CP014985.1_1130776_1131838_+,NA|175aa|up_6|NZ_CP014985.1_1133770_1134295_-,NA|60aa|up_5|NZ_CP014985.1_1134372_1134552_-,NA|78aa|up_1|NZ_CP014985.1_1137648_1137882_+,NA|48aa|down_0|NZ_CP014985.1_1139099_1139243_-	NA|354aa|up_9|NZ_CP014985.1_1130776_1131838_+	NA	NA|274aa|up_8|NZ_CP014985.1_1132011_1132833_+	cd01169, HMPP_kinase, 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1	NA|211aa|up_7|NZ_CP014985.1_1132904_1133537_-	COG4832, COG4832, Uncharacterized conserved protein [Function unknown]	NA|175aa|up_6|NZ_CP014985.1_1133770_1134295_-	NA	NA|60aa|up_5|NZ_CP014985.1_1134372_1134552_-	NA	NA|223aa|up_4|NZ_CP014985.1_1134548_1135217_-	pfam02525, Flavodoxin_2, Flavodoxin-like fold	NA|262aa|up_3|NZ_CP014985.1_1135219_1136005_-	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|368aa|up_2|NZ_CP014985.1_1136215_1137319_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|78aa|up_1|NZ_CP014985.1_1137648_1137882_+	NA	NA|159aa|up_0|NZ_CP014985.1_1137875_1138352_-	cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18	NA|48aa|down_0|NZ_CP014985.1_1139099_1139243_-	NA	NA|1042aa|down_1|NZ_CP014985.1_1139341_1142467_-	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|374aa|down_2|NZ_CP014985.1_1142466_1143588_-	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair]	NA|209aa|down_3|NZ_CP014985.1_1143648_1144275_+	pfam13419, HAD_2, Haloacid dehalogenase-like hydrolase	NA|259aa|down_4|NZ_CP014985.1_1144719_1145496_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|143aa|down_5|NZ_CP014985.1_1145500_1145929_+	PRK08621, PRK08621, galactose-6-phosphate isomerase subunit LacA; Reviewed	NA|173aa|down_6|NZ_CP014985.1_1145973_1146492_+	PRK08622, PRK08622, galactose-6-phosphate isomerase subunit LacB; Reviewed	NA|334aa|down_7|NZ_CP014985.1_1146530_1147532_+	PRK12399, PRK12399, tagatose 1,6-diphosphate aldolase; Reviewed	NA|313aa|down_8|NZ_CP014985.1_1147646_1148585_+	PRK13508, PRK13508, tagatose-6-phosphate kinase; Provisional	NA|227aa|down_9|NZ_CP014985.1_1148606_1149287_+	pfam16161, DUF4867, Domain of unknown function (DUF4867)
GCF_002079285.1_ASM207928v1	NZ_CP014985	Lacticaseibacillus paracasei strain IIA chromosome, complete genome	2	2637446-2639792	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas9,cas1,cas2,csn2	DEDDh,DinG,csa3,cas3,WYL,cas9,cas1,cas2,csn2,RT	Type II-B,Type II-A,Type II-C	GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC,GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC,GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	36,36,36	0	0	NA	NA	NA:NA:NA	34,35,35	35	TypeII-B,TypeII-A,TypeII-C	DEDDh,DinG,csa3,cas3,WYL,cas9,cas1,cas2,csn2,RT	NA|108aa|up_7|NZ_CP014985.1_2628180_2628504_-,NA|389aa|up_5|NZ_CP014985.1_2629170_2630337_+,NA|265aa|up_4|NZ_CP014985.1_2630337_2631132_+,NA|367aa|down_0|NZ_CP014985.1_2640072_2641173_+	NA|581aa|up_9|NZ_CP014985.1_2624658_2626401_+	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|576aa|up_8|NZ_CP014985.1_2626381_2628109_+	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|108aa|up_7|NZ_CP014985.1_2628180_2628504_-	NA	NA|125aa|up_6|NZ_CP014985.1_2628572_2628947_-	pfam06486, DUF1093, Protein of unknown function (DUF1093)	NA|389aa|up_5|NZ_CP014985.1_2629170_2630337_+	NA	NA|265aa|up_4|NZ_CP014985.1_2630337_2631132_+	NA	cas9|1361aa|up_3|NZ_CP014985.1_2631280_2635363_+	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	cas1|302aa|up_2|NZ_CP014985.1_2635557_2636463_+	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas2|102aa|up_1|NZ_CP014985.1_2636440_2636746_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|226aa|up_0|NZ_CP014985.1_2636742_2637420_+	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	NA|367aa|down_0|NZ_CP014985.1_2640072_2641173_+	NA	NA|142aa|down_1|NZ_CP014985.1_2641324_2641750_+	COG5341, COG5341, Uncharacterized protein conserved in bacteria [Function unknown]	NA|564aa|down_2|NZ_CP014985.1_2641946_2643638_+	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|544aa|down_3|NZ_CP014985.1_2643634_2645266_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|286aa|down_4|NZ_CP014985.1_2645403_2646261_+	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|613aa|down_5|NZ_CP014985.1_2646712_2648551_+	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|483aa|down_6|NZ_CP014985.1_2648721_2650170_+	PRK09593, arb, 6-phospho-beta-glucosidase; Reviewed	NA|189aa|down_7|NZ_CP014985.1_2650296_2650863_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|473aa|down_8|NZ_CP014985.1_2651153_2652572_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|476aa|down_9|NZ_CP014985.1_2654209_2655637_-	pfam03577, Peptidase_C69, Peptidase family C69
GCF_002079285.1_ASM207928v1	NZ_CP014985	Lacticaseibacillus paracasei strain IIA chromosome, complete genome	3	3019841-3019961	3	CRISPRCasFinder	no		DEDDh,DinG,csa3,cas3,WYL,cas9,cas1,cas2,csn2,RT	Orphan	GGTTTCTGGGGTGGCGAACGCGTTTAGAAACCG	33	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,csa3,cas3,WYL,cas9,cas1,cas2,csn2,RT	NA|146aa|up_5|NZ_CP014985.1_3014844_3015282_+,NA|100aa|down_5|NZ_CP014985.1_3024537_3024837_-	NA|398aa|up_9|NZ_CP014985.1_3008339_3009533_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|276aa|up_8|NZ_CP014985.1_3009535_3010363_+	PRK00768, nadE, ammonia-dependent NAD(+) synthetase	NA|386aa|up_7|NZ_CP014985.1_3010582_3011740_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|887aa|up_6|NZ_CP014985.1_3012047_3014708_+	cd02089, P-type_ATPase_Ca_prok, prokaryotic P-type Ca(2+)-ATPase similar to Synechococcus elongatus sp	NA|146aa|up_5|NZ_CP014985.1_3014844_3015282_+	NA	NA|332aa|up_4|NZ_CP014985.1_3015767_3016763_+	cd06325, PBP1_ABC_unchar_transporter, type 1 periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions	NA|300aa|up_3|NZ_CP014985.1_3016759_3017659_+	COG4120, COG4120, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|251aa|up_2|NZ_CP014985.1_3017651_3018404_+	COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	NA|151aa|up_1|NZ_CP014985.1_3018545_3018998_+	PRK04351, PRK04351, SprT family protein	NA|155aa|up_0|NZ_CP014985.1_3018990_3019455_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|202aa|down_0|NZ_CP014985.1_3020181_3020787_+	COG4684, COG4684, Predicted membrane protein [Function unknown]	NA|380aa|down_1|NZ_CP014985.1_3020865_3022005_+	cd08659, M20_ArgE_DapE-like, Peptidase M20 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE)-like	NA|273aa|down_2|NZ_CP014985.1_3022064_3022883_-	cd09019, galactose_mutarotase_like, galactose mutarotase_like	NA|188aa|down_3|NZ_CP014985.1_3022995_3023559_+	pfam04471, Mrr_cat, Restriction endonuclease	NA|277aa|down_4|NZ_CP014985.1_3023706_3024537_+	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|100aa|down_5|NZ_CP014985.1_3024537_3024837_-	NA	NA|394aa|down_6|NZ_CP014985.1_3025181_3026363_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|427aa|down_7|NZ_CP014985.1_3026374_3027655_+	cd00644, HMG-CoA_reductase_classII, Class II hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR)	NA|389aa|down_8|NZ_CP014985.1_3027638_3028805_+	TIGR01835, 3-hydroxy-3-methylglutaryl_CoA_synthase, 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade	NA|585aa|down_9|NZ_CP014985.1_3029128_3030883_+	TIGR02720, Pyruvate_oxidase, pyruvate oxidase
GCF_002079285.1_ASM207928v1	NZ_CP014986	Lacticaseibacillus paracasei strain IIA plasmid unnamed1, complete sequence	1	9057-9134	1	CRISPRCasFinder	no			Orphan	AAATGTGTAAATGTGTAAATGTG	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,csa3,cas3,WYL,cas9,cas1,cas2,csn2,RT	NA|276aa|up_6|NZ_CP014986.1_3524_4352_+,NA|304aa|up_2|NZ_CP014986.1_6590_7502_-,NA|129aa|up_1|NZ_CP014986.1_7637_8024_-,NA|169aa|down_2|NZ_CP014986.1_12679_13186_+,NA|93aa|down_3|NZ_CP014986.1_13175_13454_-,NA|70aa|down_4|NZ_CP014986.1_13476_13686_-	NA|314aa|up_9|NZ_CP014986.1_715_1657_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|110aa|up_8|NZ_CP014986.1_1666_1996_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|361aa|up_7|NZ_CP014986.1_2213_3296_+	cd03820, GT4_AmsD-like, amylovoran biosynthesis glycosyltransferase AmsD and similar proteins	NA|276aa|up_6|NZ_CP014986.1_3524_4352_+	NA	NA|307aa|up_5|NZ_CP014986.1_4584_5505_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|73aa|up_4|NZ_CP014986.1_5586_5805_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|228aa|up_3|NZ_CP014986.1_5893_6576_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|304aa|up_2|NZ_CP014986.1_6590_7502_-	NA	NA|129aa|up_1|NZ_CP014986.1_7637_8024_-	NA	NA|294aa|up_0|NZ_CP014986.1_8016_8898_-	pfam13614, AAA_31, AAA domain	NA|492aa|down_0|NZ_CP014986.1_9611_11087_+	pfam08708, PriCT_1, Primase C terminal 1 (PriCT-1)	NA|94aa|down_1|NZ_CP014986.1_12408_12690_+	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family	NA|169aa|down_2|NZ_CP014986.1_12679_13186_+	NA	NA|93aa|down_3|NZ_CP014986.1_13175_13454_-	NA	NA|70aa|down_4|NZ_CP014986.1_13476_13686_-	NA	NA|688aa|down_5|NZ_CP014986.1_13957_16021_+	pfam03389, MobA_MobL, MobA/MobL family	NA|388aa|down_6|NZ_CP014986.1_16165_17328_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|199aa|down_7|NZ_CP014986.1_17299_17896_+	PRK09852, PRK09852, cryptic 6-phospho-beta-glucosidase; Provisional	NA|286aa|down_8|NZ_CP014986.1_17915_18773_+	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|240aa|down_9|NZ_CP014986.1_19092_19812_+	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional
GCF_002079285.1_ASM207928v1	NZ_CP014988	Lacticaseibacillus paracasei strain IIA plasmid unnamed3, complete sequence	1	46881-47039	1	CRISPRCasFinder	no			Orphan	CTCAATCCCTTGATACACACGGAAGTGTAAAATCTACAC	39	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,csa3,cas3,WYL,cas9,cas1,cas2,csn2,RT	NA|106aa|up_5|NZ_CP014988.1_42691_43009_-,NA|128aa|up_4|NZ_CP014988.1_43200_43584_+,NA|119aa|up_2|NZ_CP014988.1_44865_45222_+,NA|78aa|up_1|NZ_CP014988.1_45214_45448_-,NA|246aa|down_0|NZ_CP014988.1_47513_48251_+,NA|79aa|down_2|NZ_CP014988.1_49493_49730_+,NA|73aa|down_3|NZ_CP014988.1_49737_49956_+,NA|77aa|down_4|NZ_CP014988.1_49948_50179_+,NA|93aa|down_5|NZ_CP014988.1_50165_50444_+,NA|93aa|down_6|NZ_CP014988.1_52137_52416_+,NA|89aa|down_7|NZ_CP014988.1_52427_52694_+,NA|59aa|down_8|NZ_CP014988.1_52712_52889_+,NA|76aa|down_9|NZ_CP014988.1_52890_53118_+	NA|545aa|up_9|NZ_CP014988.1_38208_39843_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|229aa|up_8|NZ_CP014988.1_40021_40707_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|150aa|up_7|NZ_CP014988.1_40828_41278_+	cd02223, cupin_Bh2720-like, Bacillus halodurans Bh2720 and related proteins, cupin domain	NA|307aa|up_6|NZ_CP014988.1_41554_42475_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|106aa|up_5|NZ_CP014988.1_42691_43009_-	NA	NA|128aa|up_4|NZ_CP014988.1_43200_43584_+	NA	NA|431aa|up_3|NZ_CP014988.1_43580_44873_+	cd01700, PolY_Pol_V_umuC, umuC subunit of DNA Polymerase V	NA|119aa|up_2|NZ_CP014988.1_44865_45222_+	NA	NA|78aa|up_1|NZ_CP014988.1_45214_45448_-	NA	NA|263aa|up_0|NZ_CP014988.1_45452_46241_-	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|246aa|down_0|NZ_CP014988.1_47513_48251_+	NA	NA|76aa|down_1|NZ_CP014988.1_48739_48967_+	pfam17362, pXO2-34, Family of unknown function	NA|79aa|down_2|NZ_CP014988.1_49493_49730_+	NA	NA|73aa|down_3|NZ_CP014988.1_49737_49956_+	NA	NA|77aa|down_4|NZ_CP014988.1_49948_50179_+	NA	NA|93aa|down_5|NZ_CP014988.1_50165_50444_+	NA	NA|93aa|down_6|NZ_CP014988.1_52137_52416_+	NA	NA|89aa|down_7|NZ_CP014988.1_52427_52694_+	NA	NA|59aa|down_8|NZ_CP014988.1_52712_52889_+	NA	NA|76aa|down_9|NZ_CP014988.1_52890_53118_+	NA
