The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP015906	Lactococcus lactis subsp. lactis strain UC77 chromosome, complete genome	2538130	35339	185194	2538130	terminase,transposase,tRNA,protease,bacteriocin,holin,integrase	Lactococcus_phage(57.69%)	156	34731:34758	49660:49687
34731:34758	attL	CATACGGCATTCAATCAGTGTTTTTTTG	NA	NA	NA	NA
WP_010905041.1|35339_35663_-	sigma-70 family RNA polymerase sigma factor	NA	Q9AZI1	Lactococcus_phage	100.0	3.8e-52
WP_010905042.1|35687_36098_-	hypothetical protein	NA	Q9AZI2	Lactococcus_phage	100.0	8.0e-71
WP_010905043.1|36094_36538_-|terminase	terminase small subunit	terminase	Q9AZI3	Lactococcus_phage	100.0	7.3e-62
WP_010905044.1|36670_37252_-	hypothetical protein	NA	Q9AZI4	Lactococcus_phage	100.0	2.0e-99
WP_010905045.1|37487_39116_-	DNA primase	NA	Q9AZI5	Lactococcus_phage	100.0	0.0e+00
WP_010905046.1|39126_39921_-	hypothetical protein	NA	Q9AZI6	Lactococcus_phage	100.0	5.4e-156
WP_010905047.1|39924_40254_-	hypothetical protein	NA	Q9AZI7	Lactococcus_phage	100.0	5.2e-57
WP_010905048.1|40240_40435_-	hypothetical protein	NA	Q9AZI8	Lactococcus_phage	100.0	2.3e-28
WP_010905049.1|40431_40686_-	hypothetical protein	NA	Q9AZI9	Lactococcus_phage	100.0	1.5e-40
WP_010905050.1|40682_40922_-	hypothetical protein	NA	Q9AZJ0	Lactococcus_phage	100.0	1.6e-39
WP_010905051.1|40964_41246_-	hypothetical protein	NA	Q9AZJ1	Lactococcus_phage	100.0	8.5e-48
WP_010905052.1|41242_41494_-	XRE family transcriptional regulator	NA	Q9AZJ2	Lactococcus_phage	100.0	1.7e-39
WP_010905053.1|41490_42012_-	hypothetical protein	NA	Q9AZJ3	Lactococcus_phage	100.0	1.5e-93
WP_010905054.1|42015_42210_-	hypothetical protein	NA	Q9AZJ4	Lactococcus_phage	100.0	7.9e-29
WP_010905055.1|42285_43026_-	hypothetical protein	NA	Q9AZJ5	Lactococcus_phage	100.0	4.1e-134
WP_010905056.1|43054_43231_-	hypothetical protein	NA	Q9AZJ6	Lactococcus_phage	100.0	2.2e-22
WP_003132198.1|43512_43899_+	XRE family transcriptional regulator	NA	Q9AZJ7	Lactococcus_phage	100.0	7.3e-66
WP_003132200.1|43908_44463_+	hypothetical protein	NA	Q9AZJ8	Lactococcus_phage	100.0	8.1e-111
WP_003132204.1|44573_44804_+	hypothetical protein	NA	Q9AZK0	Lactococcus_phage	100.0	3.7e-17
WP_003132205.1|44876_45071_+	hypothetical protein	NA	Q9AZK1	Lactococcus_phage	100.0	6.0e-29
WP_010905057.1|45222_45465_+	hypothetical protein	NA	Q9AZK2	Lactococcus_phage	100.0	4.6e-34
WP_010905058.1|45600_45825_+	hypothetical protein	NA	Q9AZK3	Lactococcus_phage	100.0	4.5e-36
WP_011834160.1|46291_46618_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015966788.1|46945_47203_+	hypothetical protein	NA	Q9AZK4	Lactococcus_phage	100.0	1.7e-42
WP_010905060.1|47193_47409_+	hypothetical protein	NA	Q9AZK5	Lactococcus_phage	100.0	5.5e-31
WP_010905061.1|47525_47690_+|bacteriocin	bacteriocin	bacteriocin	Q9AZK6	Lactococcus_phage	100.0	7.9e-22
WP_010905062.1|47811_48117_+|bacteriocin	bacteriocin immunity protein	bacteriocin	Q9AZK7	Lactococcus_phage	100.0	8.3e-49
WP_010905063.1|48366_49551_+|integrase	site-specific integrase	integrase	Q9AZK8	Lactococcus_phage	100.0	1.9e-226
WP_010905064.1|50003_50453_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
49660:49687	attR	CATACGGCATTCAATCAGTGTTTTTTTG	NA	NA	NA	NA
WP_010905065.1|50529_50772_+	NINE protein	NA	NA	NA	NA	NA
WP_021214948.1|50852_52235_-	SulP family inorganic anion transporter	NA	NA	NA	NA	NA
WP_010905072.1|55422_55944_+	N-acetyltransferase	NA	A0A1P8CWJ6	Bacillus_phage	42.9	6.0e-31
WP_010905073.1|56407_57583_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_003132217.1|57681_58437_+	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_010905074.1|58794_60213_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.0	3.0e-40
WP_010905075.1|60406_62005_-	dihydrolipoamide acetyltransferase	NA	NA	NA	NA	NA
WP_010905076.1|61997_62978_-	alpha-ketoacid dehydrogenase subunit beta	NA	NA	NA	NA	NA
WP_010905077.1|62980_64105_-	thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha	NA	NA	NA	NA	NA
WP_010905078.1|64193_65195_-	lipoate--protein ligase A	NA	NA	NA	NA	NA
WP_010905079.1|65394_66240_-	glycerophosphodiester phosphodiesterase	NA	A0A0S2MYI4	Enterococcus_phage	31.0	1.7e-11
WP_010905080.1|66320_66971_-	HD domain-containing protein	NA	A0A1S5XYU7	Kurlavirus	31.4	4.4e-15
WP_010905081.1|67087_68113_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010905082.1|68614_69052_+	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
WP_010905083.1|69212_70526_+	APC family permease	NA	NA	NA	NA	NA
WP_010905084.1|70585_70936_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010905085.1|70994_71990_-	phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010905086.1|72092_72905_-	HAD family hydrolase	NA	NA	NA	NA	NA
WP_010905087.1|73030_74668_-	ABC-F family ATPase	NA	A0A2K9L3Z8	Tupanvirus	25.9	5.3e-49
WP_010905088.1|75795_77076_-	O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase	NA	A0A2I2L687	Orpheovirus	26.9	1.4e-09
WP_010905089.1|77302_78136_-	short-chain dehydrogenase/reductase	NA	NA	NA	NA	NA
WP_010905090.1|78536_79004_+	universal stress protein	NA	NA	NA	NA	NA
WP_010905091.1|79132_79330_+	DUF4649 domain-containing protein	NA	NA	NA	NA	NA
WP_010905092.1|79360_79981_+	esterase	NA	NA	NA	NA	NA
WP_010905093.1|80031_81201_+	ring-cleaving dioxygenase	NA	NA	NA	NA	NA
WP_003132255.1|81211_81802_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010905094.1|82399_84547_+|bacteriocin	bacteriocin ABC transporter ATP-binding protein/permease	bacteriocin	W8CYL7	Bacillus_phage	26.5	7.2e-38
WP_010905095.1|84561_85983_+|bacteriocin	bacteriocin secretion accessory protein	bacteriocin	NA	NA	NA	NA
WP_021214955.1|86076_86202_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010905096.1|86443_86896_+	transporter	NA	NA	NA	NA	NA
WP_021214956.1|86934_87591_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010905098.1|87693_87975_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010905099.1|87984_88137_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076996931.1|88522_89842_+|transposase	IS4-like element IS1675 family transposase	transposase	NA	NA	NA	NA
WP_010905100.1|90089_90308_+	hypothetical protein	NA	NA	NA	NA	NA
WP_021214958.1|90401_90539_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
WP_010905101.1|90553_91264_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010905102.1|91689_92142_+	transporter	NA	NA	NA	NA	NA
WP_081172262.1|93240_94080_-	DDE domain-containing protein	NA	A0A1P8CWQ3	Bacillus_phage	41.4	9.3e-50
WP_010905105.1|94091_94352_-|transposase	IS3 family transposase	transposase	A0A1P8CWP5	Bacillus_phage	37.6	5.0e-10
WP_010905106.1|94462_94831_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003132256.1|95050_95353_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003132257.1|95354_95522_-|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
WP_003132258.1|96088_96238_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_010905107.1|96267_96441_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_010905108.1|96804_98586_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	29.1	3.8e-61
WP_010905109.1|98638_99424_-	chromosome partitioning protein ParB	NA	NA	NA	NA	NA
WP_010905110.1|99478_100738_-	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	45.4	3.5e-93
WP_010905111.1|100781_101270_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010905112.1|101421_101889_+	DUF3013 domain-containing protein	NA	NA	NA	NA	NA
WP_010905113.1|101918_103472_+	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	28.1	3.0e-46
WP_010905114.1|103602_103887_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010905115.1|103924_104413_+	DUF1905 domain-containing protein	NA	NA	NA	NA	NA
WP_010905116.1|104430_105384_+	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA	NA
WP_010905117.1|105483_106236_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010905118.1|106264_107221_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_010905119.1|107421_109644_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	U5J9N6	Bacillus_phage	28.3	2.9e-13
WP_003132278.1|109659_110595_-	glycosyltransferase	NA	V9QJB1	Oenococcus_phage	49.7	1.3e-76
WP_010905120.1|110785_111241_+|tRNA	D-aminoacyl-tRNA deacylase	tRNA	NA	NA	NA	NA
WP_010905121.1|111233_112229_+	DUF1211 domain-containing protein	NA	NA	NA	NA	NA
WP_010905122.1|112231_112855_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_010905123.1|112994_114404_+	amino acid permease	NA	NA	NA	NA	NA
WP_010905124.1|114552_115194_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010905125.1|115231_115723_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_023349128.1|115757_116402_-	FMN-dependent NADH-azoreductase 1	NA	NA	NA	NA	NA
WP_010905127.1|116575_119173_+	protein translocase subunit SecA	NA	NA	NA	NA	NA
WP_081172036.1|119301_120339_+	3-deoxy-7-phosphoheptulonate synthase	NA	S4W5F1	Pandoravirus	35.8	1.2e-46
WP_003132292.1|120589_120856_+	phosphocarrier protein HPr	NA	NA	NA	NA	NA
WP_010905129.1|120858_122586_+	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_010905130.1|122700_123015_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010905131.1|123055_123355_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010905132.1|123742_124678_-	alpha/beta hydrolase	NA	W5S4D8	Pithovirus	26.0	1.1e-06
WP_010905133.1|124886_125240_+	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA	NA
WP_010905134.1|125361_126525_+	MFS transporter	NA	NA	NA	NA	NA
WP_031296963.1|126966_128160_+	argininosuccinate synthase	NA	NA	NA	NA	NA
WP_010905136.1|128190_129570_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010905137.1|129585_130782_-	MFS transporter	NA	NA	NA	NA	NA
WP_010905138.1|130976_131552_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010905139.1|131703_132057_+	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_010905140.1|132053_132863_+	protein translocase component YidC	NA	NA	NA	NA	NA
WP_010905141.1|132951_133866_+	protein jag	NA	NA	NA	NA	NA
WP_003131818.1|133997_134132_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_081172038.1|134339_135251_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010905142.1|135319_135640_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010905143.1|135770_135998_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010905144.1|136175_136721_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010905145.1|136773_137454_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_003129559.1|137622_137913_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_011675779.1|137930_138770_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	41.0	1.6e-46
WP_003131820.1|141708_141975_+	IreB family regulatory phosphoprotein	NA	NA	NA	NA	NA
WP_021214669.1|141974_142406_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_003131822.1|142558_142882_+	DUF1292 domain-containing protein	NA	NA	NA	NA	NA
WP_003131824.1|142912_143464_-	DUF1211 domain-containing protein	NA	NA	NA	NA	NA
WP_010905150.1|143558_144344_-	carbonyl reductase	NA	NA	NA	NA	NA
WP_010905151.1|144363_144609_-	DUF2316 domain-containing protein	NA	NA	NA	NA	NA
WP_010905152.1|144618_145404_-	oxidoreductase	NA	NA	NA	NA	NA
WP_010905153.1|145515_146061_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_021214668.1|146142_148089_-	1,4-alpha-glucan-branching protein	NA	NA	NA	NA	NA
WP_010905154.1|148215_148536_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010905155.1|149007_154959_+	membrane protein	NA	NA	NA	NA	NA
WP_021214667.1|155734_156775_+	hypothetical protein	NA	NA	NA	NA	NA
WP_081172040.1|156829_157720_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_021037031.1|157873_159454_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011835457.1|159434_160199_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.4	4.5e-27
WP_021216425.1|160321_161221_-	EamA family transporter	NA	NA	NA	NA	NA
WP_023349191.1|161371_162262_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_021214757.1|162266_162596_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010890681.1|162621_163002_-	single-stranded DNA-binding protein	NA	NA	NA	NA	NA
WP_021214758.1|163015_163381_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010890679.1|163451_163718_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010890656.1|163731_164529_-	hypothetical protein	NA	E2ELL2	Clostridium_phage	38.3	1.8e-18
WP_058147809.1|165062_166049_+	UDP-glucose 4-epimerase GalE	NA	A0A2K9L5H6	Tupanvirus	36.0	3.4e-51
WP_021214774.1|166195_166492_-	recombinase family protein	NA	A0A0A8WIK3	Clostridium_phage	42.7	1.3e-11
WP_021214775.1|166698_167079_-	hypothetical protein	NA	A0A182BQ76	Lactococcus_phage	72.3	2.5e-10
WP_081172042.1|167038_168505_-	DNA polymerase	NA	Q6DMX4	Streptococcus_phage	51.5	7.7e-124
WP_081172044.1|168700_169813_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076996931.1|170066_171386_+|transposase	IS4-like element IS1675 family transposase	transposase	NA	NA	NA	NA
WP_076996931.1|171680_173000_+|transposase	IS4-like element IS1675 family transposase	transposase	NA	NA	NA	NA
WP_081172046.1|173250_174864_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_081172048.1|174866_176216_+	HNH endonuclease	NA	NA	NA	NA	NA
WP_076996931.1|176577_177897_+|transposase	IS4-like element IS1675 family transposase	transposase	NA	NA	NA	NA
WP_081172050.1|179070_179706_+	type II restriction endonuclease	NA	NA	NA	NA	NA
WP_081172052.1|180000_181113_+	hypothetical protein	NA	NA	NA	NA	NA
WP_081172053.1|181618_183790_+	DUF1906 domain-containing protein	NA	NA	NA	NA	NA
WP_081172055.1|183804_184401_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081172057.1|184650_184947_+	hypothetical protein	NA	A0A1P8BM62	Lactococcus_phage	35.8	1.8e-11
WP_081172059.1|184939_185194_+|holin	phage holin	holin	Q9AZR2	Lactococcus_phage	51.4	9.4e-14
>prophage 2
NZ_CP015906	Lactococcus lactis subsp. lactis strain UC77 chromosome, complete genome	2538130	294326	302433	2538130	transposase,holin	Catovirus(28.57%)	9	NA	NA
WP_010905211.1|294326_295163_+|holin	phosphorylcholine transferase LicD	holin	A0A1V0SAS8	Catovirus	31.6	1.3e-06
WP_010905212.1|295152_296154_+	sugar transferase	NA	A0A1V0SAH6	Catovirus	33.7	5.0e-10
WP_081172112.1|296155_297016_+	sugar transferase	NA	NA	NA	NA	NA
WP_010905103.1|297067_297907_-|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	41.4	9.3e-50
WP_003137511.1|297918_298179_-|transposase	IS3 family transposase	transposase	A0A1P8CWP5	Bacillus_phage	37.6	8.4e-10
WP_010905214.1|298266_299493_+	LPS biosynthesis protein	NA	A0A0S2MYI4	Enterococcus_phage	37.6	4.0e-33
WP_010905215.1|299503_299932_+	glycerol-3-phosphate cytidylyltransferase	NA	A0A221SAS8	Streptomyces_phage	39.3	4.2e-14
WP_010905216.1|300057_300570_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003129822.1|300951_302433_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	2.1e-97
>prophage 3
NZ_CP015906	Lactococcus lactis subsp. lactis strain UC77 chromosome, complete genome	2538130	475059	487190	2538130		Streptococcus_phage(40.0%)	14	NA	NA
WP_003131595.1|475059_475377_+	thioredoxin	NA	A0A0K2FIM3	Achromobacter_phage	30.4	4.5e-05
WP_081172122.1|475462_476083_+	DUF4479 domain-containing protein	NA	NA	NA	NA	NA
WP_021214845.1|476251_477592_+	NADH oxidase	NA	NA	NA	NA	NA
WP_010905314.1|477681_478071_+	single-stranded DNA-binding protein	NA	A0A0K0MWE1	Streptococcus_phage	45.0	1.4e-24
WP_003131589.1|478190_478475_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	44.1	3.1e-13
WP_003131585.1|478562_480191_+	molecular chaperone GroEL	NA	A0A219YK78	uncultured_virus	56.8	4.9e-156
WP_003131583.1|480236_481049_-	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	38.1	3.1e-34
WP_010905315.1|481219_482662_-	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	33.0	1.4e-32
WP_003131580.1|482654_483356_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	39.7	1.2e-42
WP_003131575.1|483533_484169_+	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	65.0	5.4e-74
WP_003131573.1|484301_485162_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	45.2	5.0e-67
WP_010905316.1|485213_485996_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010905317.1|485988_486315_+	DNA replication initiation control protein YabA	NA	NA	NA	NA	NA
WP_010905318.1|486314_487190_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	65.4	8.7e-99
>prophage 4
NZ_CP015906	Lactococcus lactis subsp. lactis strain UC77 chromosome, complete genome	2538130	524241	563219	2538130	terminase,tRNA,protease,capsid,head,portal,tail,holin,integrase	Lactococcus_phage(100.0%)	58	526810:526840	563731:563761
WP_010905335.1|524241_524667_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_003131525.1|524663_525182_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010905336.1|525285_526671_+	LytR family transcriptional regulator	NA	NA	NA	NA	NA
526810:526840	attL	TCCCCCTCGGATCATGGTGCCAAACCTCGCC	NA	NA	NA	NA
WP_010905337.1|526902_528036_-|integrase	site-specific integrase	integrase	Q9AZR0	Lactococcus_phage	100.0	2.8e-214
WP_010905338.1|528158_528737_-	SHOCT domain-containing protein	NA	Q9AZQ9	Lactococcus_phage	100.0	9.8e-99
WP_010905339.1|528820_529657_-	LexA family transcriptional repressor	NA	Q9AZQ8	Lactococcus_phage	100.0	6.0e-158
WP_010905340.1|529873_530056_+	hypothetical protein	NA	A0A1B1IMU6	Lactococcus_phage	96.6	5.0e-25
WP_010905341.1|530087_530321_+	hypothetical protein	NA	Q9AZQ6	Lactococcus_phage	100.0	5.0e-38
WP_010905342.1|530429_530579_+	hypothetical protein	NA	Q9AZQ5	Lactococcus_phage	100.0	9.1e-17
WP_010905343.1|530673_531081_+	transcriptional regulator	NA	Q77JL3	Lactococcus_phage	100.0	1.2e-37
WP_010905344.1|531092_531848_+	hypothetical protein	NA	Q9AZQ4	Lactococcus_phage	100.0	1.1e-139
WP_010905345.1|531860_532190_+	DUF771 domain-containing protein	NA	Q9AZQ3	Lactococcus_phage	100.0	8.1e-58
WP_010905346.1|532190_532361_+	hypothetical protein	NA	A0A1P8BME6	Lactococcus_phage	100.0	8.7e-24
WP_010905347.1|532404_532578_+	hypothetical protein	NA	Q9AZQ1	Lactococcus_phage	100.0	8.0e-25
WP_010905348.1|532676_533483_+	recombinase	NA	Q9AZQ0	Lactococcus_phage	100.0	6.2e-144
WP_010905349.1|533482_534259_+	hypothetical protein	NA	Q9AZP9	Lactococcus_phage	100.0	2.6e-147
WP_010905350.1|534486_535263_+	replisome organizer	NA	Q9AZP8	Lactococcus_phage	100.0	2.0e-131
WP_010905351.1|535272_536157_+	ATP-binding protein	NA	Q9AZP7	Lactococcus_phage	100.0	1.6e-164
WP_010905352.1|536153_536318_+	hypothetical protein	NA	Q9AZP6	Lactococcus_phage	100.0	2.5e-23
WP_010905353.1|536241_536718_+	hypothetical protein	NA	Q9AZP5	Lactococcus_phage	99.3	7.3e-76
WP_010905354.1|536825_536990_+	hypothetical protein	NA	Q9AZP4	Lactococcus_phage	100.0	4.9e-24
WP_010905355.1|536964_537327_+	hypothetical protein	NA	Q9AZP3	Lactococcus_phage	100.0	1.5e-60
WP_010905356.1|537520_537727_+	DUF1125 domain-containing protein	NA	Q9MC26	Lactococcus_phage	100.0	2.6e-30
WP_010905357.1|537719_537992_+	hypothetical protein	NA	Q9AYV0	Lactococcus_phage	100.0	5.3e-47
WP_010905358.1|537988_538543_+	hypothetical protein	NA	Q9AYU5	Lactococcus_phage	100.0	1.6e-103
WP_010905359.1|538539_538959_+	aminotransferase	NA	Q9AZP1	Lactococcus_phage	100.0	3.0e-73
WP_010905360.1|538958_539249_+	hypothetical protein	NA	Q9AZP0	Lactococcus_phage	100.0	2.5e-47
WP_010905361.1|539245_539410_+	hypothetical protein	NA	Q9AZN9	Lactococcus_phage	100.0	4.9e-24
WP_010905362.1|539458_539602_+	hypothetical protein	NA	Q9AZN8	Lactococcus_phage	100.0	2.1e-18
WP_010905363.1|539598_539781_+	hypothetical protein	NA	Q9AZN7	Lactococcus_phage	100.0	1.8e-30
WP_010905364.1|539847_539955_+	hypothetical protein	NA	Q8LTM0	Lactococcus_phage	94.3	1.7e-09
WP_010905365.1|539962_540148_+	hypothetical protein	NA	Q9AZN6	Lactococcus_phage	100.0	1.6e-26
WP_010905366.1|540200_540410_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010905367.1|540622_540916_+	hypothetical protein	NA	Q9AZN4	Lactococcus_phage	100.0	9.7e-47
WP_010905368.1|541027_541273_+	XRE family transcriptional regulator	NA	Q9AZN3	Lactococcus_phage	100.0	4.5e-37
WP_010905369.1|541317_541707_+	hypothetical protein	NA	Q9AZN2	Lactococcus_phage	100.0	5.8e-63
WP_010905370.1|541708_542107_+	hypothetical protein	NA	Q9AZN1	Lactococcus_phage	100.0	2.4e-64
WP_010905371.1|542103_542256_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010905372.1|542432_542855_+	hypothetical protein	NA	Q9AZM9	Lactococcus_phage	100.0	8.5e-52
WP_010905373.1|543092_543596_+	HNH endonuclease	NA	Q9AZM8	Lactococcus_phage	100.0	3.1e-93
WP_010905374.1|543712_544165_+|terminase	phage terminase small subunit P27 family	terminase	Q9AZM7	Lactococcus_phage	100.0	1.3e-82
WP_015966785.1|544164_545979_+|terminase	terminase large subunit	terminase	Q9AZM6	Lactococcus_phage	100.0	0.0e+00
WP_010905376.1|545987_546152_+	hypothetical protein	NA	Q9AZM5	Lactococcus_phage	100.0	1.9e-20
WP_010905377.1|546148_547228_+|portal	phage portal protein	portal	Q9AZM4	Lactococcus_phage	100.0	2.4e-199
WP_010905378.1|547227_547815_+|head,protease	HK97 family phage prohead protease	head,protease	Q9AZM3	Lactococcus_phage	100.0	4.4e-107
WP_010905379.1|547804_549118_+|capsid	phage major capsid protein	capsid	Q9AZM2	Lactococcus_phage	100.0	2.0e-200
WP_010905380.1|549128_549434_+	hypothetical protein	NA	Q9AZM1	Lactococcus_phage	100.0	4.4e-50
WP_010905381.1|549420_549756_+|head,tail	head-tail adaptor protein	head,tail	Q9AZM0	Lactococcus_phage	100.0	5.9e-56
WP_010905382.1|549752_550238_+	hypothetical protein	NA	Q9AZL9	Lactococcus_phage	100.0	8.8e-85
WP_010905384.1|550630_551236_+	small major structural protein	NA	Q9AZL7	Lactococcus_phage	100.0	4.9e-109
WP_010905385.1|551295_551640_+	hypothetical protein	NA	Q9AZL6	Lactococcus_phage	100.0	1.2e-27
WP_010905386.1|551809_555649_+	hypothetical protein	NA	Q9AZL5	Lactococcus_phage	100.0	0.0e+00
WP_010905387.1|555651_557187_+	hypothetical protein	NA	Q9AZL3	Lactococcus_phage	100.0	4.8e-294
WP_010905388.1|557186_561512_+	hypothetical protein	NA	Q9AZL2	Lactococcus_phage	100.0	0.0e+00
WP_010905389.1|561531_561858_+	hypothetical protein	NA	Q9AZL1	Lactococcus_phage	100.0	3.9e-52
WP_010905390.1|561844_562132_+|holin	phage holin	holin	Q9AZL0	Lactococcus_phage	100.0	5.6e-47
WP_010905391.1|562131_562911_+	muramidase	NA	Q9AZK9	Lactococcus_phage	100.0	2.1e-128
WP_010905392.1|563015_563219_-	hypothetical protein	NA	A5GYL5	Lactococcus_phage	89.6	4.5e-27
563731:563761	attR	TCCCCCTCGGATCATGGTGCCAAACCTCGCC	NA	NA	NA	NA
>prophage 5
NZ_CP015906	Lactococcus lactis subsp. lactis strain UC77 chromosome, complete genome	2538130	582004	600152	2538130	integrase,head,protease	Lactococcus_phage(89.66%)	32	582262:582290	597412:597440
WP_010905402.1|582004_582280_+	DNA-binding protein HU	NA	A7KV42	Bacillus_phage	67.4	1.6e-22
582262:582290	attL	GAAAGACGCAGTTAAATAATTATAGCTAT	NA	NA	NA	NA
WP_010905403.1|582389_583538_-|integrase	integrase	integrase	Q9AZF9	Lactococcus_phage	100.0	1.4e-210
WP_010905404.1|583661_584153_-	hypothetical protein	NA	Q9AZF8	Lactococcus_phage	100.0	3.7e-83
WP_003131491.1|584206_584503_-	hypothetical protein	NA	Q9AZF7	Lactococcus_phage	100.0	3.3e-50
WP_003131490.1|584549_585137_-	hypothetical protein	NA	Q9AZF6	Lactococcus_phage	100.0	3.6e-109
WP_003131489.1|585148_585517_-	XRE family transcriptional regulator	NA	Q9AZF5	Lactococcus_phage	100.0	1.8e-66
WP_082231502.1|585810_586002_+	hypothetical protein	NA	Q9AZF4	Lactococcus_phage	98.4	3.3e-27
WP_010905405.1|586017_586278_+	excisionase	NA	Q9AZF3	Lactococcus_phage	100.0	8.6e-47
WP_010905406.1|586436_586631_+	hypothetical protein	NA	Q9AZF2	Lactococcus_phage	100.0	1.0e-28
WP_010905407.1|586635_587061_+	hypothetical protein	NA	Q9AZF1	Lactococcus_phage	100.0	2.6e-77
WP_082231503.1|587095_587335_+	hypothetical protein	NA	Q9AZF0	Lactococcus_phage	98.7	3.0e-38
WP_010905409.1|587331_587586_+	hypothetical protein	NA	Q9AZE9	Lactococcus_phage	100.0	3.7e-42
WP_003131482.1|587582_587777_+	hypothetical protein	NA	Q9AZE8	Lactococcus_phage	100.0	2.3e-28
WP_010905410.1|587763_588090_+	hypothetical protein	NA	Q9AZE7	Lactococcus_phage	100.0	1.1e-54
WP_010905411.1|588097_588676_+	hypothetical protein	NA	Q9AZE6	Lactococcus_phage	100.0	1.2e-91
WP_010905412.1|588668_590111_+	hypothetical protein	NA	Q9AZE5	Lactococcus_phage	100.0	1.6e-278
WP_010905413.1|590262_590847_+	hypothetical protein	NA	Q9AZE4	Lactococcus_phage	100.0	2.9e-106
WP_010905414.1|591023_591209_+	hypothetical protein	NA	Q9AZE3	Lactococcus_phage	100.0	7.0e-27
WP_010905415.1|591235_591844_+	hypothetical protein	NA	Q9AZE2	Lactococcus_phage	100.0	1.2e-102
WP_021214769.1|591852_592443_+|head,protease	HK97 family phage prohead protease	head,protease	Q9AZE1	Lactococcus_phage	99.5	2.6e-107
WP_010905417.1|592658_592988_+	hypothetical protein	NA	Q9AZE0	Lactococcus_phage	100.0	9.3e-54
WP_010905418.1|593088_593409_+	sigma-70 family RNA polymerase sigma factor	NA	Q9AZD9	Lactococcus_phage	100.0	3.8e-52
WP_010905419.1|593732_594005_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010905420.1|594121_594343_+	hypothetical protein	NA	Q9AZD7	Lactococcus_phage	100.0	3.0e-32
WP_010905421.1|594511_595000_+	DUF4065 domain-containing protein	NA	Q9AZD6	Lactococcus_phage	100.0	5.0e-88
WP_010905422.1|594965_595532_+	hypothetical protein	NA	Q9AZD5	Lactococcus_phage	100.0	4.6e-101
WP_010905423.1|595850_596033_+	hypothetical protein	NA	Q9AZD4	Lactococcus_phage	100.0	5.0e-25
WP_010905424.1|596780_596981_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	100.0	6.7e-31
WP_003131761.1|597521_598019_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
597412:597440	attR	GAAAGACGCAGTTAAATAATTATAGCTAT	NA	NA	NA	NA
WP_010905425.1|598165_598675_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	42.1	4.3e-26
WP_003131759.1|598688_599249_+	methylphosphotriester-DNA alkyltransferase	NA	NA	NA	NA	NA
WP_010905426.1|599342_600152_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	36.7	2.2e-19
>prophage 6
NZ_CP015906	Lactococcus lactis subsp. lactis strain UC77 chromosome, complete genome	2538130	695890	754872	2538130	integrase,transposase,tRNA,protease	Bacillus_phage(25.0%)	45	715214:715273	732682:732793
WP_003129541.1|695890_696775_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_003129542.1|696857_697526_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003129543.1|697696_698593_+	SPFH domain-containing protein	NA	A0A1V0SL90	Klosneuvirus	34.8	1.8e-35
WP_003129544.1|698967_699228_+	membrane protein	NA	NA	NA	NA	NA
WP_003129545.1|699585_700509_+	ribonuclease Z	NA	NA	NA	NA	NA
WP_010905467.1|700501_701203_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010905468.1|701369_703598_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	30.4	1.3e-79
WP_003129549.1|703675_704233_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.4	2.6e-32
WP_003129551.1|704448_705012_+	DNA-directed RNA polymerase subunit delta	NA	NA	NA	NA	NA
WP_010905469.1|705148_706801_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_003129554.1|706863_707334_+	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_010905471.1|710245_710701_+	CtsR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010905472.1|710690_713141_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A223W0B1	Agrobacterium_phage	34.0	5.7e-124
WP_003129564.1|713275_713833_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_010905473.1|714017_715319_+	enolase	NA	A0A1X9I5Z8	Streptococcus_phage	87.6	4.0e-217
715214:715273	attL	TACAGACCGTATGGCTAAATACAACCAATTGCTTCGTATCGAAGACCAATTGGCTGAAGT	NA	NA	NA	NA
WP_010905474.1|715403_716342_+|integrase	integrase	integrase	A0A142F1N9	Bacillus_phage	27.5	5.2e-25
WP_010905475.1|716614_717382_+	hypothetical protein	NA	NA	NA	NA	NA
WP_021213686.1|717918_718110_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010905477.1|718425_718608_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010905478.1|718629_719799_+	hypothetical protein	NA	V9VGE4	Lactococcus_phage	40.4	1.1e-37
WP_010905479.1|721671_724659_+	type I restriction endonuclease subunit R	NA	A0A220A398	Liberibacter_phage	26.4	5.5e-20
WP_010905480.1|724698_726246_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	39.1	1.4e-99
WP_010905481.1|726242_727466_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	30.7	1.6e-34
WP_010905483.1|727589_728669_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010905484.1|728830_729100_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010905485.1|729434_729602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010905486.1|729867_730638_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010905487.1|731048_731888_-|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	41.1	3.2e-50
WP_031297090.1|731899_732160_-|transposase	IS3 family transposase	transposase	A0A1P8CWP5	Bacillus_phage	36.5	1.1e-09
WP_010905490.1|732691_732787_+	hypothetical protein	NA	W6LP63	Streptococcus_phage	83.9	1.8e-07
WP_010905491.1|732901_733573_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.0	1.6e-28
732682:732793	attR	TACAGACCGTATGGCTAAATACAACCAATTGCTTCGTATCGAAGACCAATTGGCTGAAGTGGCTCAATACAAAGGTCTTAAAGCATTCTACAACCTTAAAAAATAAGGTTTA	NA	NA	NA	NA
WP_003129569.1|733575_734649_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010905492.1|734660_735230_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010905493.1|735417_736941_-	long-chain acyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010905494.1|737186_738050_+	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
WP_003129579.1|738310_740674_+	formate acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	32.0	9.5e-108
WP_010905495.1|740805_741465_+	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010905496.1|741467_742685_+	multidrug resistance efflux pump PmrA	NA	NA	NA	NA	NA
WP_003129585.1|742681_742828_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023349185.1|742956_743847_+|transposase	IS4/IS5 family transposase	transposase	NA	NA	NA	NA
WP_014570401.1|744175_745438_+	FtsW/RodA/SpoVE family cell cycle protein	NA	NA	NA	NA	NA
WP_010905498.1|745543_748957_+	pyruvate carboxylase	NA	NA	NA	NA	NA
WP_003129590.1|749080_750406_+	citrate/2-methylcitrate synthase	NA	NA	NA	NA	NA
WP_010905501.1|752968_754207_+	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_003129593.1|754272_754872_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	52.0	2.1e-51
>prophage 7
NZ_CP015906	Lactococcus lactis subsp. lactis strain UC77 chromosome, complete genome	2538130	1082821	1096605	2538130		Enterococcus_phage(25.0%)	13	NA	NA
WP_081172146.1|1082821_1083514_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	34.4	3.6e-31
WP_010905664.1|1083506_1084442_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003130966.1|1084543_1085521_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	66.2	2.4e-118
WP_003130967.1|1085870_1088039_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	61.1	3.0e-257
WP_003130968.1|1088174_1088597_-	protein NrdI	NA	A0A142F1R4	Bacillus_phage	37.3	2.3e-12
WP_012897612.1|1088598_1088817_-	NrdH-redoxin	NA	C3U2K9	Lactococcus_phage	47.6	7.6e-12
WP_010905665.1|1088990_1089632_-	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_003130974.1|1089906_1091841_+	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	43.4	5.4e-125
WP_010905667.1|1092045_1092252_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010905668.1|1092248_1092584_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003130976.1|1092576_1093410_+	3'-5' exonuclease	NA	A0A0K2SUJ2	Clostridium_phage	39.4	3.1e-21
WP_003130977.1|1093406_1093856_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003130980.1|1094130_1096605_+	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	32.2	4.2e-98
>prophage 8
NZ_CP015906	Lactococcus lactis subsp. lactis strain UC77 chromosome, complete genome	2538130	1105263	1113531	2538130		Staphylococcus_phage(50.0%)	9	NA	NA
WP_021214550.1|1105263_1106352_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	39.1	2.9e-51
WP_003130990.1|1106351_1107002_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	43.6	1.2e-41
WP_010905673.1|1107010_1108207_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	51.0	1.3e-110
WP_010905674.1|1108234_1108699_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	53.0	5.3e-39
WP_003130994.1|1108801_1109254_+	signal peptidase II	NA	NA	NA	NA	NA
WP_003130995.1|1109314_1110220_+	RluA family pseudouridine synthase	NA	A0A2H4UV25	Bodo_saltans_virus	28.2	5.4e-11
WP_003130996.1|1110366_1110810_+	acid phosphatase	NA	NA	NA	NA	NA
WP_031296488.1|1110949_1112572_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010905676.1|1112574_1113531_+	glycosyltransferase	NA	I1TED8	Salmonella_phage	37.5	3.1e-49
>prophage 9
NZ_CP015906	Lactococcus lactis subsp. lactis strain UC77 chromosome, complete genome	2538130	1116861	1159657	2538130	terminase,transposase,protease,capsid,head,portal,tail,holin,integrase	Lactococcus_phage(95.24%)	68	1110873:1110889	1157070:1157086
1110873:1110889	attL	GTAAAAAATGAGAAATT	NA	NA	NA	NA
WP_081172142.1|1116861_1117752_-|transposase	IS982-like element ISLll1 family transposase	transposase	NA	NA	NA	NA
WP_081172149.1|1118058_1119876_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	M1HVL7	Paramecium_bursaria_Chlorella_virus	36.9	6.0e-94
WP_003131898.1|1120006_1120687_+	DNA repair protein RadC	NA	NA	NA	NA	NA
WP_010905679.1|1120885_1122010_-|integrase	site-specific integrase	integrase	Q9B016	Lactococcus_phage	100.0	1.0e-213
WP_023349242.1|1122132_1122678_-	hypothetical protein	NA	Q9B015	Lactococcus_phage	99.4	2.6e-93
WP_010905681.1|1122734_1123172_-	hypothetical protein	NA	Q9B014	Lactococcus_phage	100.0	1.1e-81
WP_010905682.1|1123168_1123711_-	transcriptional regulator	NA	Q9B013	Lactococcus_phage	100.0	3.1e-91
WP_010905683.1|1123879_1124098_+	hypothetical protein	NA	O48504	Lactococcus_phage	100.0	2.9e-35
WP_010905684.1|1124134_1124878_+	hypothetical protein	NA	Q9B012	Lactococcus_phage	100.0	2.1e-138
WP_003131910.1|1124890_1125226_+	DUF771 domain-containing protein	NA	Q38331	Lactococcus_phage	100.0	1.3e-58
WP_010905685.1|1125363_1125558_+	hypothetical protein	NA	Q77JL6	Lactococcus_phage	100.0	3.0e-28
WP_023349243.1|1125554_1125830_-	hypothetical protein	NA	Q9AYU7	Lactococcus_phage	98.9	3.5e-46
WP_015966756.1|1125932_1126148_+	hypothetical protein	NA	Q9XJE1	Lactococcus_phage	100.0	3.1e-34
WP_010905688.1|1126263_1126782_+	hypothetical protein	NA	Q9XJE3	Lactococcus_phage	100.0	6.3e-89
WP_010905689.1|1126790_1127414_+	DUF1071 domain-containing protein	NA	Q9B009	Lactococcus_phage	100.0	1.9e-116
WP_010905690.1|1127413_1127866_+	Single-stranded DNA-binding protein 1	NA	Q9B008	Lactococcus_phage	100.0	4.6e-80
WP_010905691.1|1128005_1128773_+	replisome organizer	NA	A5GYR3	Lactococcus_phage	100.0	1.7e-122
WP_015966759.1|1128772_1129498_+	hypothetical protein	NA	Q9XJE7	Lactococcus_phage	100.0	1.8e-134
WP_002819817.1|1129494_1129884_+	hypothetical protein	NA	R9QLL1	Lactococcus_phage	100.0	3.2e-69
WP_010905693.1|1129886_1130081_+	hypothetical protein	NA	Q9B005	Lactococcus_phage	100.0	6.7e-28
WP_010905694.1|1130061_1130313_+	DUF1031 domain-containing protein	NA	Q9B004	Lactococcus_phage	98.8	1.3e-39
WP_010905695.1|1130424_1130691_+	hypothetical protein	NA	Q9B003	Lactococcus_phage	100.0	6.3e-45
WP_010905696.1|1130712_1130892_+	hypothetical protein	NA	Q9AYU3	Lactococcus_phage	100.0	9.2e-24
WP_010905697.1|1130881_1131451_+	hypothetical protein	NA	Q9B002	Lactococcus_phage	100.0	2.8e-90
WP_010905356.1|1131644_1131851_+	DUF1125 domain-containing protein	NA	Q9MC26	Lactococcus_phage	100.0	2.6e-30
WP_010905357.1|1131843_1132116_+	hypothetical protein	NA	Q9AYV0	Lactococcus_phage	100.0	5.3e-47
WP_010905358.1|1132112_1132667_+	hypothetical protein	NA	Q9AYU5	Lactococcus_phage	100.0	1.6e-103
WP_010905698.1|1132663_1133083_+	aminotransferase	NA	Q9B001	Lactococcus_phage	100.0	5.1e-73
WP_010905699.1|1133085_1133583_+	hypothetical protein	NA	Q9B000	Lactococcus_phage	100.0	2.2e-91
WP_010905700.1|1133572_1133920_+	hypothetical protein	NA	Q9AZZ9	Lactococcus_phage	100.0	4.5e-59
WP_010905701.1|1133941_1134106_+	hypothetical protein	NA	Q9AZZ8	Lactococcus_phage	100.0	4.9e-24
WP_010905702.1|1134152_1134338_+	hypothetical protein	NA	Q9AZZ7	Lactococcus_phage	100.0	2.4e-27
WP_010905703.1|1134379_1134553_+	hypothetical protein	NA	Q9AZZ6	Lactococcus_phage	100.0	1.9e-29
WP_010905704.1|1134553_1134853_+	hypothetical protein	NA	Q9AZZ5	Lactococcus_phage	100.0	4.8e-49
WP_010905705.1|1134849_1135032_+	hypothetical protein	NA	Q9AZZ4	Lactococcus_phage	100.0	4.3e-29
WP_010905706.1|1134969_1135233_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010905707.1|1135395_1135689_+	hypothetical protein	NA	Q9AZZ2	Lactococcus_phage	100.0	4.4e-47
WP_010905708.1|1135766_1136168_+	hypothetical protein	NA	Q9AZZ1	Lactococcus_phage	100.0	5.6e-69
WP_023349146.1|1136431_1136731_+	HNH endonuclease	NA	Q9AZZ0	Lactococcus_phage	100.0	9.6e-58
WP_010905710.1|1136822_1137191_+	hypothetical protein	NA	Q9AZY9	Lactococcus_phage	100.0	1.8e-61
WP_010905711.1|1137174_1138953_+|terminase	terminase large subunit	terminase	Q9AZY8	Lactococcus_phage	100.0	0.0e+00
WP_010905712.1|1138966_1140172_+|portal	phage portal protein	portal	Q9AZY7	Lactococcus_phage	99.8	3.6e-228
WP_010905713.1|1140186_1140783_+|head,protease	HK97 family phage prohead protease	head,protease	Q9AZY6	Lactococcus_phage	100.0	5.5e-105
WP_010905714.1|1140754_1141948_+|capsid	phage major capsid protein	capsid	Q9AZY5	Lactococcus_phage	100.0	3.6e-172
WP_010905715.1|1142002_1142860_+	hypothetical protein	NA	Q9AZY4	Lactococcus_phage	100.0	1.1e-167
WP_010905716.1|1142852_1143134_+	hypothetical protein	NA	Q9AZY3	Lactococcus_phage	100.0	6.7e-45
WP_010905717.1|1143120_1143438_+	hypothetical protein	NA	Q9AZY2	Lactococcus_phage	99.0	4.6e-50
WP_010905718.1|1143427_1143799_+	hypothetical protein	NA	Q9AZY1	Lactococcus_phage	100.0	2.5e-63
WP_010905719.1|1143795_1144113_+	hypothetical protein	NA	Q9AZY0	Lactococcus_phage	100.0	7.5e-53
WP_010905720.1|1144130_1144739_+|tail	phage tail protein	tail	Q9AZX9	Lactococcus_phage	100.0	3.3e-105
WP_010905721.1|1144748_1145108_+	hypothetical protein	NA	Q9AZX8	Lactococcus_phage	100.0	2.7e-62
WP_010905722.1|1145134_1145311_+	hypothetical protein	NA	A0A2H4JHE4	uncultured_Caudovirales_phage	53.8	1.8e-08
WP_010905723.1|1145324_1147586_+|tail	phage tail tape measure protein	tail	Q9AZX7	Lactococcus_phage	100.0	0.0e+00
WP_010905724.1|1147586_1148336_+	hypothetical protein	NA	Q9AZX6	Lactococcus_phage	99.6	1.5e-144
WP_023349144.1|1148332_1151017_+	peptidase M23	NA	Q9AZX5	Lactococcus_phage	99.9	0.0e+00
WP_010905726.1|1151029_1152631_+	DUF2479 domain-containing protein	NA	Q9AZX4	Lactococcus_phage	100.0	0.0e+00
WP_010905727.1|1152623_1153454_+	hypothetical protein	NA	Q9AZX3	Lactococcus_phage	100.0	3.1e-154
WP_010905728.1|1153512_1153920_+	hypothetical protein	NA	Q9AZX2	Lactococcus_phage	100.0	2.3e-70
WP_010905729.1|1153906_1154245_+	hypothetical protein	NA	Q9AZX1	Lactococcus_phage	100.0	1.3e-55
WP_010905730.1|1154246_1154474_+	hypothetical protein	NA	Q9AZX0	Lactococcus_phage	100.0	1.6e-33
WP_010905731.1|1154499_1154724_+|holin	holin	holin	Q9AZW9	Lactococcus_phage	100.0	1.0e-32
WP_010905732.1|1154736_1155024_+|holin	phage holin	holin	Q9AZW8	Lactococcus_phage	100.0	9.5e-47
WP_010905733.1|1155023_1155803_+	muramidase	NA	Q9AZW7	Lactococcus_phage	100.0	5.5e-129
WP_080671886.1|1155836_1156040_-	hypothetical protein	NA	A5GYL5	Lactococcus_phage	92.5	3.4e-30
WP_076996893.1|1156009_1156195_+	hypothetical protein	NA	Q77RZ6	Lactococcus_phage	80.3	4.1e-19
WP_023349143.1|1156304_1156955_-	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
WP_003132739.1|1157179_1157572_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
1157070:1157086	attR	GTAAAAAATGAGAAATT	NA	NA	NA	NA
WP_021214548.1|1157749_1159657_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	28.9	1.6e-49
>prophage 10
NZ_CP015906	Lactococcus lactis subsp. lactis strain UC77 chromosome, complete genome	2538130	1602507	1612808	2538130		Synechococcus_phage(33.33%)	8	NA	NA
WP_003130058.1|1602507_1604064_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	45.6	2.3e-70
WP_003130055.1|1604239_1604782_-	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	29.9	1.8e-09
WP_010906016.1|1604918_1605956_-	oxidoreductase	NA	NA	NA	NA	NA
WP_003130052.1|1606086_1606617_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010906017.1|1606667_1608257_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	22.2	3.0e-09
WP_003130044.1|1608423_1608972_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	31.1	2.8e-18
WP_010906018.1|1608999_1610016_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A0E3FGG1	Synechococcus_phage	40.4	6.4e-61
WP_003130040.1|1610204_1612808_-	chaperone protein ClpB	NA	K4FB40	Cronobacter_phage	32.8	9.4e-125
>prophage 11
NZ_CP015906	Lactococcus lactis subsp. lactis strain UC77 chromosome, complete genome	2538130	1649925	1727896	2538130	terminase,tRNA,portal,head,tail,holin,integrase	Lactococcus_phage(87.27%)	90	1645637:1645653	1727974:1727990
1645637:1645653	attL	AAAATTTCTGTCAGTAA	NA	NA	NA	NA
WP_003130706.1|1649925_1650669_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_003130707.1|1650673_1651189_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010906034.1|1651360_1652188_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003130709.1|1652328_1653273_-	ferrochelatase	NA	NA	NA	NA	NA
WP_003130710.1|1653534_1653774_-	KH domain-containing protein	NA	NA	NA	NA	NA
WP_003130711.1|1653869_1654142_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010906035.1|1654230_1655463_-	hydroxymethylglutaryl-CoA reductase, degradative	NA	NA	NA	NA	NA
WP_010906036.1|1655542_1656682_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_021214458.1|1656990_1658145_+	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA	NA
WP_003130716.1|1658205_1658913_-	glucosamine-6-phosphate deaminase	NA	NA	NA	NA	NA
WP_003130718.1|1659064_1660027_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003130719.1|1660323_1661361_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003130721.1|1661437_1661749_-	XRE family transcriptional regulator	NA	A0A1S5SAD3	Streptococcus_phage	40.8	3.3e-08
WP_021214457.1|1663125_1668075_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010906039.1|1668111_1668867_-	WxL domain-containing protein	NA	NA	NA	NA	NA
WP_010906040.1|1668904_1669663_-	WxL domain-containing protein	NA	NA	NA	NA	NA
WP_076996895.1|1669700_1670342_-	WxL domain-containing protein	NA	NA	NA	NA	NA
WP_003130736.1|1670519_1671365_-	WxL domain-containing protein	NA	NA	NA	NA	NA
WP_003130737.1|1671425_1671611_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010906043.1|1672337_1672955_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003130741.1|1672968_1673139_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010906045.1|1673166_1674474_-	GTPase ObgE	NA	NA	NA	NA	NA
WP_003130744.1|1674629_1675808_-	cell division protein DivIB	NA	NA	NA	NA	NA
WP_003130746.1|1675808_1676882_-	undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase	NA	NA	NA	NA	NA
WP_003130748.1|1677091_1678444_-	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA	NA
WP_010906046.1|1678934_1679276_-	nitrogen regulatory protein P-II	NA	NA	NA	NA	NA
WP_003130753.1|1679407_1680649_-	ammonium transporter	NA	NA	NA	NA	NA
WP_010906048.1|1680831_1682307_-	sensor histidine kinase	NA	W8CYF6	Bacillus_phage	33.1	1.5e-26
WP_003130756.1|1682314_1683007_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	34.1	5.3e-35
WP_003130758.1|1683162_1683693_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_003130760.1|1683823_1684069_-	50S ribosomal protein L31 type B	NA	NA	NA	NA	NA
WP_010906049.1|1684224_1684656_-	hypothetical protein	NA	A0A1P8BMT7	Lactococcus_phage	34.3	7.4e-11
WP_010906050.1|1684770_1685133_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010906051.1|1685617_1686139_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003130766.1|1686208_1687045_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_023164022.1|1688200_1688380_-	hypothetical protein	NA	Q9AZG2	Lactococcus_phage	94.9	2.3e-22
WP_043994592.1|1688376_1688580_-	hypothetical protein	NA	A0A059NTA2	Lactococcus_phage	84.3	4.0e-15
WP_023164020.1|1689928_1690153_-|holin	holin	holin	A0A059NT58	Lactococcus_phage	86.5	2.7e-28
WP_023164019.1|1690139_1690445_-	hypothetical protein	NA	A0A1P8BKN8	Lactococcus_phage	96.0	8.9e-51
WP_023164018.1|1690572_1691724_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023164016.1|1692636_1695390_-	peptidase M23	NA	A0A1P8BMA1	Lactococcus_phage	96.4	0.0e+00
WP_023164015.1|1695389_1696151_-	hypothetical protein	NA	Q9AYV7	Lactococcus_phage	98.0	8.8e-140
WP_023164355.1|1696164_1698978_-|tail	phage tail tape measure protein	tail	Q9G097	Lactococcus_phage	95.9	3.0e-286
WP_043994770.1|1698992_1699256_-	hypothetical protein	NA	Q9AZ59	Lactococcus_phage	100.0	5.0e-42
WP_014570725.1|1699351_1699687_-	hypothetical protein	NA	Q77RZ7	Lactococcus_phage	99.1	4.2e-54
WP_023164013.1|1699802_1700300_-|tail	phage major tail protein, TP901-1 family	tail	A0A1P8BKV6	Lactococcus_phage	97.0	2.4e-85
WP_023164012.1|1700310_1700700_-	hypothetical protein	NA	A0A1P8BKT6	Lactococcus_phage	99.2	5.6e-66
WP_014570728.1|1700696_1701035_-	hypothetical protein	NA	Q77K21	Lactococcus_phage	97.3	7.3e-54
WP_023164011.1|1701031_1701343_-	hypothetical protein	NA	A0A1P8BLP2	Lactococcus_phage	95.1	1.5e-53
WP_023164010.1|1701339_1701672_-	hypothetical protein	NA	A0A1P8BMC5	Lactococcus_phage	99.1	9.3e-54
WP_080681443.1|1701693_1701960_-	hypothetical protein	NA	A0A1P8BLK6	Lactococcus_phage	88.7	4.9e-21
WP_023164008.1|1701959_1702823_-	hypothetical protein	NA	A0A1P8BKP7	Lactococcus_phage	97.9	4.2e-154
WP_023164007.1|1702841_1703471_-	DUF4355 domain-containing protein	NA	Q9AYW7	Lactococcus_phage	82.7	1.9e-63
WP_023164006.1|1703655_1704003_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023164005.1|1704100_1705141_-|head	phage head morphogenesis protein	head	A0A1P8BM04	Lactococcus_phage	97.7	4.8e-189
WP_023164004.1|1705144_1706521_-|portal	phage portal protein	portal	Q9AZ65	Lactococcus_phage	93.0	8.8e-239
WP_023164003.1|1706541_1707924_-|terminase	terminase	terminase	Q8LTR4	Lactococcus_phage	98.5	3.4e-267
WP_023164002.1|1707916_1708327_-|terminase	terminase	terminase	Q9AZ67	Lactococcus_phage	98.5	1.6e-66
WP_023164000.1|1708498_1709092_-	hypothetical protein	NA	D2IYV7	Enterococcus_phage	27.6	4.9e-13
WP_014573151.1|1709275_1709698_-	DUF722 domain-containing protein	NA	Q9AYX5	Lactococcus_phage	100.0	5.5e-75
WP_023164356.1|1709778_1709991_-	XRE family transcriptional regulator	NA	Q9AZN3	Lactococcus_phage	92.9	4.7e-27
WP_023163998.1|1710105_1710348_-	hypothetical protein	NA	Q8LTL7	Lactococcus_phage	71.2	1.4e-27
WP_023164358.1|1710772_1710937_-	hypothetical protein	NA	Q94M83	Lactococcus_phage	48.4	9.4e-07
WP_023164359.1|1710933_1711077_-	hypothetical protein	NA	A0A1P8BMD9	Lactococcus_phage	97.9	4.6e-18
WP_023164360.1|1711123_1711804_-	hypothetical protein	NA	A5GYP2	Lactococcus_phage	97.3	1.7e-126
WP_023164361.1|1711800_1712040_-	hypothetical protein	NA	A0A1W6JL86	Lactococcus_phage	49.3	7.5e-13
WP_080681475.1|1712029_1712254_-	hypothetical protein	NA	A0A1P8BL37	Lactococcus_phage	58.4	2.4e-21
WP_023164363.1|1712659_1712935_-	hypothetical protein	NA	A0A1P8BLI3	Lactococcus_phage	92.0	5.5e-44
WP_023164364.1|1712937_1713357_-	aminotransferase	NA	A0A1P8BMQ4	Lactococcus_phage	97.1	4.3e-72
WP_023164365.1|1713353_1713593_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023164366.1|1713589_1713910_-	hypothetical protein	NA	V9VEU7	Lactococcus_phage	83.7	6.9e-46
WP_023164367.1|1713906_1714599_-	DUF1642 domain-containing protein	NA	Q9AZU5	Lactococcus_phage	49.8	1.2e-42
WP_043994640.1|1714614_1714863_-	hypothetical protein	NA	A0A1P8BLV4	Lactococcus_phage	59.8	2.2e-15
WP_014570535.1|1714871_1715078_-	hypothetical protein	NA	Q9MC28	Lactococcus_phage	100.0	4.8e-32
WP_023164370.1|1715410_1715575_-	hypothetical protein	NA	A0A1P8BKY2	Lactococcus_phage	98.1	5.5e-23
WP_023164371.1|1715583_1716474_-	prepilin peptidase	NA	Q38098	Lactococcus_phage	99.7	1.0e-163
WP_023164372.1|1716483_1717290_-	replication protein	NA	A0A1P8BL25	Lactococcus_phage	98.1	4.4e-57
WP_023164373.1|1717517_1718294_-	hypothetical protein	NA	Q9AZP9	Lactococcus_phage	97.7	6.0e-144
WP_023164374.1|1718293_1719100_-	hypothetical protein	NA	Q9AZQ0	Lactococcus_phage	94.8	4.3e-137
WP_023164375.1|1719199_1719442_-	hypothetical protein	NA	A0A1B1IMF7	Lactococcus_phage	93.8	7.1e-35
WP_023164376.1|1719444_1719714_-	hypothetical protein	NA	A0A059NT46	Lactococcus_phage	96.1	5.1e-34
WP_021214422.1|1719793_1720132_-	hypothetical protein	NA	A0A1B1IMQ1	Lactococcus_phage	100.0	2.6e-59
WP_023164377.1|1720145_1720883_-	AntA/AntB antirepressor	NA	A0A1P8BKE3	Lactococcus_phage	99.2	2.5e-139
WP_003129906.1|1720894_1721137_-	hypothetical protein	NA	Q77JL3	Lactococcus_phage	97.5	2.0e-37
WP_023164378.1|1721290_1721761_+	hypothetical protein	NA	NA	NA	NA	NA
WP_082231505.1|1722221_1723058_+	helix-turn-helix domain-containing protein	NA	Q9AZQ8	Lactococcus_phage	97.8	6.2e-155
WP_081172255.1|1723107_1724247_+|integrase	site-specific integrase	integrase	A0A1B1IMP1	Lactococcus_phage	97.9	9.2e-210
WP_010906052.1|1724351_1725425_-	carbamoyl-phosphate synthase small chain	NA	R4TGJ8	Halovirus	35.3	1.5e-60
WP_003129382.1|1725487_1726420_-	aspartate carbamoyltransferase	NA	M1HWF9	Paramecium_bursaria_Chlorella_virus	30.5	3.7e-23
WP_010906053.1|1726603_1727896_-	uracil permease	NA	Q9KX94	Enterobacteria_phage	35.9	1.6e-61
1727974:1727990	attR	TTACTGACAGAAATTTT	NA	NA	NA	NA
>prophage 12
NZ_CP015906	Lactococcus lactis subsp. lactis strain UC77 chromosome, complete genome	2538130	1851364	1861223	2538130	tRNA	Prochlorococcus_phage(33.33%)	9	NA	NA
WP_003130886.1|1851364_1852126_-	phosphate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.0	1.5e-17
WP_003130885.1|1852291_1853101_-	phosphate ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.5	7.0e-10
WP_003130884.1|1853134_1854028_-	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA	NA
WP_081172219.1|1854027_1854951_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003130881.1|1855071_1855923_-	phosphate ABC transporter substrate-binding protein	NA	E3SNT9	Prochlorococcus_phage	27.3	4.2e-05
WP_003130880.1|1856269_1857166_-	phosphate ABC transporter substrate-binding protein	NA	E3SM63	Prochlorococcus_phage	32.4	7.2e-08
WP_003130878.1|1857443_1857911_-	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	56.6	2.7e-43
WP_010906106.1|1857942_1858518_-	esterase	NA	NA	NA	NA	NA
WP_003130876.1|1858604_1861223_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	33.7	7.1e-64
>prophage 13
NZ_CP015906	Lactococcus lactis subsp. lactis strain UC77 chromosome, complete genome	2538130	2033790	2129229	2538130	terminase,transposase,tRNA,protease,capsid,head,portal,tail,holin	Lactococcus_phage(83.05%)	99	NA	NA
WP_081172226.1|2033790_2034738_-|transposase	IS30 family transposase	transposase	H7BVY4	unidentified_phage	33.0	7.6e-32
WP_010906184.1|2034874_2035144_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003130801.1|2035325_2037209_-	serine/threonine protein kinase	NA	A0A1V0SDC3	Indivirus	31.6	3.1e-21
WP_003130802.1|2037208_2037985_-	serine/threonine-protein phosphatase	NA	NA	NA	NA	NA
WP_010906185.1|2038065_2039340_-	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA	NA
WP_003131479.1|2039538_2040045_-	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
WP_012898445.1|2040065_2040254_-	DUF2273 domain-containing protein	NA	NA	NA	NA	NA
WP_010906186.1|2040264_2040825_-	alkaline shock response membrane anchor protein AmaP	NA	NA	NA	NA	NA
WP_003131476.1|2040852_2041095_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_017865027.1|2041091_2041280_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010906187.1|2041269_2042229_-|tRNA	methionyl-tRNA formyltransferase	tRNA	NA	NA	NA	NA
WP_003131474.1|2042225_2042690_-	VOC family protein	NA	NA	NA	NA	NA
WP_003131472.1|2042655_2043177_-	NUDIX domain-containing protein	NA	NA	NA	NA	NA
WP_010906188.1|2043189_2043564_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_003131470.1|2043622_2045962_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_010906189.1|2046100_2046454_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_003131468.1|2046633_2047251_-	guanylate kinase	NA	NA	NA	NA	NA
WP_003131467.1|2047398_2048994_-	ribonuclease Y	NA	NA	NA	NA	NA
WP_003131466.1|2049224_2049938_-	glucosamine-6-phosphate deaminase	NA	NA	NA	NA	NA
WP_010906190.1|2050042_2050177_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017865032.1|2050213_2051413_-	S-adenosylmethionine synthase	NA	A0A2H4PQS6	Staphylococcus_phage	66.5	3.0e-142
WP_021214466.1|2051738_2052932_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010906192.1|2053184_2053937_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_003131461.1|2054043_2054508_-	PspC domain-containing protein	NA	NA	NA	NA	NA
WP_003131460.1|2054536_2054740_-	PspC domain-containing protein	NA	NA	NA	NA	NA
WP_003131459.1|2054801_2055917_-	DUF4097 domain-containing protein	NA	NA	NA	NA	NA
WP_010906193.1|2056130_2057558_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A0A7RUS8	Clostridium_phage	33.2	1.8e-16
WP_003130410.1|2058163_2059111_-|transposase	IS30 family transposase	transposase	H7BVY4	unidentified_phage	33.0	3.4e-32
WP_003131457.1|2059638_2060535_-	fructose-1,6-bisphosphate aldolase, class II	NA	NA	NA	NA	NA
WP_081172138.1|2066334_2066994_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081172136.1|2067071_2067851_-|holin	phage holin	holin	Q9AZW7	Lactococcus_phage	98.1	1.9e-126
WP_023164507.1|2067850_2068138_-|holin	phage holin	holin	Q9AZL0	Lactococcus_phage	98.9	1.6e-46
WP_081172134.1|2068163_2069726_-	DUF2479 domain-containing protein	NA	Q9AZR3	Lactococcus_phage	94.0	1.9e-237
WP_081172132.1|2069737_2069962_-|holin	holin	holin	A0A1B1IN04	Lactococcus_phage	97.3	2.3e-32
WP_081172167.1|2069981_2072006_-	hypothetical protein	NA	Q9AZR5	Lactococcus_phage	54.8	3.7e-209
WP_081172169.1|2071983_2072157_-	hypothetical protein	NA	A0A1W6JLD0	Lactococcus_phage	93.0	2.6e-23
WP_081172171.1|2072156_2073278_-	hypothetical protein	NA	A0A1B1IN38	Lactococcus_phage	87.7	7.5e-180
WP_081172173.1|2073293_2075081_-	hypothetical protein	NA	Q9AZR8	Lactococcus_phage	93.9	0.0e+00
WP_081172175.1|2075080_2076616_-|tail	phage tail protein	tail	Q9AZR9	Lactococcus_phage	98.2	7.1e-290
WP_081172177.1|2076618_2081748_-|tail	phage tail tape measure protein	tail	Q8LTK2	Lactococcus_phage	89.3	0.0e+00
WP_021214451.1|2081972_2082389_-	hypothetical protein	NA	Q8LTK3	Lactococcus_phage	99.3	4.6e-66
WP_010905928.1|2082533_2083127_-|tail	tail protein	tail	Q9AZS2	Lactococcus_phage	100.0	3.8e-106
WP_063280625.1|2083157_2083553_-	DUF806 domain-containing protein	NA	Q8LTK5	Lactococcus_phage	98.5	2.6e-66
WP_081172179.1|2083549_2084056_-	hypothetical protein	NA	Q9AZS4	Lactococcus_phage	96.4	1.5e-87
WP_002819792.1|2084057_2084408_-|head,tail	head-tail joining protein	head,tail	Q8LTK7	Lactococcus_phage	99.1	7.3e-57
WP_010905932.1|2084382_2084706_-|head,tail	phage gp6-like head-tail connector protein	head,tail	Q9AZS6	Lactococcus_phage	100.0	6.3e-55
WP_010905933.1|2084721_2085948_-|capsid	phage major capsid protein	capsid	Q9AZS7	Lactococcus_phage	99.8	4.6e-223
WP_010905934.1|2085959_2086667_-|protease	Clp protease ClpP	protease	Q9AZS8	Lactococcus_phage	100.0	1.4e-120
WP_010905935.1|2086709_2087888_-|portal	phage portal protein	portal	Q77P35	Lactococcus_phage	100.0	3.1e-224
WP_010905936.1|2087884_2088094_-	DUF1056 domain-containing protein	NA	Q9AZT0	Lactococcus_phage	100.0	3.8e-29
WP_081172181.1|2088062_2090036_-|terminase	terminase large subunit	terminase	Q9AZT1	Lactococcus_phage	99.7	0.0e+00
WP_010905938.1|2090022_2090496_-|terminase	phage terminase small subunit P27 family	terminase	Q9AZT2	Lactococcus_phage	100.0	5.9e-86
WP_010905939.1|2090624_2091140_-	HNH endonuclease	NA	Q9AZT3	Lactococcus_phage	100.0	2.3e-99
WP_081172264.1|2091141_2091447_-	hypothetical protein	NA	Q9AZT4	Lactococcus_phage	100.0	1.1e-35
WP_011835815.1|2091626_2092028_-	hypothetical protein	NA	Q9AZZ1	Lactococcus_phage	99.2	1.2e-68
WP_081172183.1|2092393_2092735_-	hypothetical protein	NA	M1NRW0	Streptococcus_phage	54.1	1.3e-26
WP_081172185.1|2092743_2092926_-	hypothetical protein	NA	A0A1P8BKU8	Lactococcus_phage	93.3	9.7e-29
WP_081172187.1|2092922_2093162_-	hypothetical protein	NA	A0A1W6JL28	Lactococcus_phage	71.8	2.9e-25
WP_082231506.1|2093180_2093507_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081172191.1|2093572_2094265_-	hypothetical protein	NA	A0A1P8BKX7	Lactococcus_phage	97.4	2.4e-128
WP_081172193.1|2094251_2094614_-	hypothetical protein	NA	Q9MBV6	Lactococcus_phage	98.3	3.6e-67
WP_021214439.1|2094606_2094801_-	hypothetical protein	NA	Q9MBW9	Lactococcus_phage	100.0	2.4e-33
WP_081172195.1|2094790_2095042_-	hypothetical protein	NA	A0A1P8BL80	Lactococcus_phage	53.5	2.8e-26
WP_081172266.1|2095038_2095335_-	hypothetical protein	NA	A0A1P8BKA8	Lactococcus_phage	91.4	2.2e-30
WP_081172197.1|2095396_2095816_-	aminotransferase	NA	Q9AZP1	Lactococcus_phage	97.8	7.4e-72
WP_081172199.1|2095812_2096475_-	DUF1642 domain-containing protein	NA	Q9AYU5	Lactococcus_phage	82.5	1.6e-76
WP_081172201.1|2096498_2096831_-	hypothetical protein	NA	Q9G0E0	Lactococcus_phage	91.2	1.5e-11
WP_014570535.1|2096839_2097046_-	hypothetical protein	NA	Q9MC28	Lactococcus_phage	100.0	4.8e-32
WP_081172203.1|2097153_2097564_-	hypothetical protein	NA	A5GZ50	Lactococcus_phage	98.5	1.1e-75
WP_014570811.1|2097576_2097819_-	hypothetical protein	NA	A5GZ49	Lactococcus_phage	100.0	7.8e-42
WP_081172205.1|2097811_2098744_-	DnaD domain protein	NA	A5GZ47	Lactococcus_phage	89.7	4.8e-132
WP_081172207.1|2099007_2099934_-	hypothetical protein	NA	A0A1P8BKY8	Lactococcus_phage	97.4	2.8e-156
WP_081172209.1|2099930_2100764_-	hypothetical protein	NA	A0A1P8BKZ1	Lactococcus_phage	94.9	2.3e-125
WP_081172211.1|2100865_2101108_-	hypothetical protein	NA	A0A1B1IMF7	Lactococcus_phage	92.5	1.6e-34
WP_003130605.1|2101239_2101422_-	hypothetical protein	NA	A5GZ68	Lactococcus_phage	100.0	2.4e-27
WP_081172213.1|2101437_2102127_-	phage regulatory protein	NA	A5GZ67	Lactococcus_phage	98.3	2.8e-121
WP_014570819.1|2102185_2102419_-	transcriptional regulator	NA	A5GZ66	Lactococcus_phage	100.0	5.0e-38
WP_023189013.1|2102595_2103003_+	XRE family transcriptional regulator	NA	A5GZ65	Lactococcus_phage	100.0	5.1e-70
WP_023349179.1|2103013_2103598_+	hypothetical protein	NA	A5GZ64	Lactococcus_phage	98.5	8.6e-111
WP_023189015.1|2103653_2104193_+	hypothetical protein	NA	A5GZ63	Lactococcus_phage	100.0	5.7e-93
WP_081172268.1|2104318_2105776_+	recombinase family protein	NA	A0A1B1IM01	Lactococcus_phage	99.2	2.0e-273
WP_010906319.1|2105926_2107000_-	type II secretion system F family protein	NA	NA	NA	NA	NA
WP_010906320.1|2106893_2107832_-	type II/IV secretion system protein	NA	NA	NA	NA	NA
WP_010906321.1|2107951_2112928_-	PolC-type DNA polymerase III	NA	A0A0K2SUJ2	Clostridium_phage	37.8	3.2e-20
WP_010906322.1|2113040_2113577_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010906323.1|2113582_2114914_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010906324.1|2114929_2116780_-|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010906325.1|2116849_2118136_-|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_003130590.1|2118154_2118958_-	CDP-archaeol synthase	NA	NA	NA	NA	NA
WP_010906326.1|2118957_2119692_-	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	37.0	5.9e-16
WP_003130588.1|2120063_2120396_-	preprotein translocase subunit YajC	NA	NA	NA	NA	NA
WP_003130585.1|2121206_2121686_-	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_003130410.1|2121724_2122672_-|transposase	IS30 family transposase	transposase	H7BVY4	unidentified_phage	33.0	3.4e-32
WP_010906329.1|2123141_2124368_+|protease	serine protease HtrA	protease	A0A1B1IRD3	uncultured_Mediterranean_phage	26.3	4.9e-07
WP_010906330.1|2124493_2125492_+	glycosyl transferase	NA	NA	NA	NA	NA
WP_010906331.1|2125617_2126958_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003130579.1|2127065_2127290_+	DUF1797 domain-containing protein	NA	NA	NA	NA	NA
WP_010906332.1|2127431_2128436_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010906333.1|2128476_2129229_-|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	tRNA	NA	NA	NA	NA
>prophage 14
NZ_CP015906	Lactococcus lactis subsp. lactis strain UC77 chromosome, complete genome	2538130	2167709	2184990	2538130	integrase,transposase	Lactococcus_phage(85.71%)	25	2167531:2167551	2182021:2182041
2167531:2167551	attL	ATATAATAGAATAGACAGTTT	NA	NA	NA	NA
WP_003130410.1|2167709_2168657_+|transposase	IS30 family transposase	transposase	H7BVY4	unidentified_phage	33.0	3.4e-32
WP_010906204.1|2169968_2170889_-	hypothetical protein	NA	Q9AZG0	Lactococcus_phage	99.7	1.6e-172
WP_010906205.1|2170900_2171197_-	hypothetical protein	NA	Q9AZG1	Lactococcus_phage	100.0	1.6e-49
WP_023349381.1|2171385_2171607_-	hypothetical protein	NA	Q9AZD7	Lactococcus_phage	97.3	2.5e-31
WP_010906207.1|2171756_2171987_-	hypothetical protein	NA	Q9AZG3	Lactococcus_phage	100.0	1.5e-39
WP_010906208.1|2172129_2172636_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	100.0	4.2e-90
WP_010906209.1|2172794_2172932_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003130410.1|2173234_2174182_+|transposase	IS30 family transposase	transposase	H7BVY4	unidentified_phage	33.0	3.4e-32
WP_010906210.1|2174269_2174632_-	hypothetical protein	NA	Q9AZG6	Lactococcus_phage	100.0	3.4e-57
WP_010906211.1|2174648_2175221_-	hypothetical protein	NA	Q9AZG7	Lactococcus_phage	100.0	2.1e-98
WP_010906212.1|2175382_2175589_-	hypothetical protein	NA	Q9AZG9	Lactococcus_phage	100.0	1.6e-32
WP_010906213.1|2175607_2175790_-	hypothetical protein	NA	Q9AZH0	Lactococcus_phage	100.0	1.4e-27
WP_010906214.1|2176158_2176473_-	hypothetical protein	NA	Q9AZH1	Lactococcus_phage	100.0	3.4e-53
WP_010906216.1|2177866_2178136_-	hypothetical protein	NA	Q9AZH3	Lactococcus_phage	100.0	1.3e-40
WP_010906217.1|2178132_2178285_-	hypothetical protein	NA	Q9AZH4	Lactococcus_phage	100.0	1.4e-20
WP_010906218.1|2178372_2178537_-	hypothetical protein	NA	Q9AZH5	Lactococcus_phage	100.0	2.1e-22
WP_010906219.1|2178538_2178709_-	hypothetical protein	NA	Q9AZH6	Lactococcus_phage	100.0	4.6e-25
WP_010906220.1|2178788_2178914_-	hypothetical protein	NA	Q9AZH7	Lactococcus_phage	100.0	2.1e-14
WP_010906221.1|2178947_2179463_-	hypothetical protein	NA	Q9AZH8	Lactococcus_phage	100.0	4.2e-93
WP_010906222.1|2179577_2179784_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010906223.1|2179932_2180640_+	XRE family transcriptional regulator	NA	Q9AZH9	Lactococcus_phage	100.0	1.8e-123
WP_010906224.1|2180720_2181920_+|integrase	site-specific integrase	integrase	Q9AZI0	Lactococcus_phage	100.0	1.4e-224
WP_004254847.1|2182123_2182663_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
2182021:2182041	attR	ATATAATAGAATAGACAGTTT	NA	NA	NA	NA
WP_010906225.1|2182829_2184308_+	chitinase	NA	NA	NA	NA	NA
WP_010906226.1|2184327_2184990_+	chitin-binding protein	NA	A0A0K1Y848	Apis_mellifera_filamentous_virus	31.2	1.2e-15
>prophage 15
NZ_CP015906	Lactococcus lactis subsp. lactis strain UC77 chromosome, complete genome	2538130	2344825	2376368	2538130	terminase,protease,capsid,head,portal,tail,integrase	Lactococcus_phage(83.72%)	46	2358169:2358183	2379050:2379064
WP_023164511.1|2344825_2346361_-	hypothetical protein	NA	Q9AZL3	Lactococcus_phage	43.3	1.5e-101
WP_043994676.1|2346360_2350494_-	hypothetical protein	NA	Q9AZL4	Lactococcus_phage	89.2	7.0e-199
WP_023164513.1|2350663_2351014_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023164514.1|2351073_2351679_-|tail	tail protein	tail	Q9AZL7	Lactococcus_phage	97.5	1.3e-106
WP_010905383.1|2351680_2352076_-	hypothetical protein	NA	Q9AZL8	Lactococcus_phage	100.0	1.4e-67
WP_043994677.1|2352072_2352558_-	hypothetical protein	NA	Q9AZL9	Lactococcus_phage	99.4	2.0e-84
WP_010905381.1|2352554_2352890_-|head,tail	head-tail adaptor protein	head,tail	Q9AZM0	Lactococcus_phage	100.0	5.9e-56
WP_010905380.1|2352876_2353182_-	hypothetical protein	NA	Q9AZM1	Lactococcus_phage	100.0	4.4e-50
WP_023164516.1|2353192_2354506_-|capsid	phage major capsid protein	capsid	Q9AZM2	Lactococcus_phage	90.8	1.1e-187
WP_023164517.1|2354495_2355083_-|head,protease	HK97 family phage prohead protease	head,protease	Q9AZM3	Lactococcus_phage	98.5	2.4e-105
WP_023164518.1|2355082_2356162_-|portal	phage portal protein	portal	Q9AZM4	Lactococcus_phage	99.7	1.2e-198
WP_023164519.1|2356158_2356323_-	hypothetical protein	NA	Q9AZM5	Lactococcus_phage	96.3	5.7e-20
WP_023164520.1|2356331_2358146_-|terminase	terminase large subunit	terminase	Q9AZM6	Lactococcus_phage	99.8	0.0e+00
WP_023164521.1|2358145_2358538_-|terminase	phage terminase small subunit P27 family	terminase	Q9AZM7	Lactococcus_phage	38.9	6.8e-19
2358169:2358183	attL	AATCAATTTCTTCTT	NA	NA	NA	NA
WP_014573150.1|2358734_2359238_-	HNH endonuclease	NA	Q9AZM8	Lactococcus_phage	99.4	1.2e-92
WP_015966900.1|2359521_2359944_-	DUF722 domain-containing protein	NA	Q9AZ68	Lactococcus_phage	100.0	5.0e-52
WP_023164523.1|2360024_2360237_-	XRE family transcriptional regulator	NA	Q9AZN3	Lactococcus_phage	97.1	1.1e-28
WP_023164524.1|2360208_2360529_-	DUF1359 domain-containing protein	NA	Q9AZZ2	Lactococcus_phage	91.7	5.5e-43
WP_023164172.1|2361548_2362337_+	peptide transporter	NA	Q7M293	Enterobacteria_phage	27.3	5.2e-10
WP_023164358.1|2362953_2363118_-	hypothetical protein	NA	Q94M83	Lactococcus_phage	48.4	9.4e-07
WP_023164359.1|2363114_2363258_-	hypothetical protein	NA	A0A1P8BMD9	Lactococcus_phage	97.9	4.6e-18
WP_082231508.1|2363304_2363985_-	hypothetical protein	NA	A0A1P8BK99	Lactococcus_phage	97.3	1.0e-126
WP_082231509.1|2363971_2364220_-	hypothetical protein	NA	A0A1W6JL86	Lactococcus_phage	48.0	3.9e-12
WP_082231510.1|2364209_2364470_-	hypothetical protein	NA	Q77MW5	Lactococcus_phage	91.3	4.2e-17
WP_082231511.1|2364466_2364790_-	hypothetical protein	NA	A0A0D3MSP5	Lactococcus_phage	73.4	3.6e-42
WP_082231512.1|2364786_2365320_-	DUF1642 domain-containing protein	NA	A0A1B1IMR1	Lactococcus_phage	50.8	1.8e-38
WP_021166247.1|2365457_2365664_-	hypothetical protein	NA	Q9MC26	Lactococcus_phage	98.5	3.4e-30
WP_082231513.1|2365660_2365867_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014570535.1|2365875_2366082_-	hypothetical protein	NA	Q9MC28	Lactococcus_phage	100.0	4.8e-32
WP_082231514.1|2366455_2367748_-	helicase	NA	X2KU14	Streptococcus_phage	51.4	1.7e-127
WP_082231515.1|2367772_2368564_-	DNA primase	NA	A0A1S5SCM4	Streptococcus_phage	63.8	1.6e-91
WP_082231516.1|2368581_2369100_-	DUF669 domain-containing protein	NA	B3GVY6	Streptococcus_phage	58.7	3.3e-53
WP_082231517.1|2369111_2369831_-	NTP-binding protein	NA	B3GVY5	Streptococcus_phage	62.3	5.1e-81
WP_082231518.1|2369842_2371042_-	type III restriction endonuclease subunit R	NA	A0A126GGP4	Streptococcus_phage	67.8	5.4e-160
WP_082231519.1|2371007_2371463_-	hypothetical protein	NA	A0A1S5SAX0	Streptococcus_phage	63.8	3.9e-50
WP_082231520.1|2371443_2371797_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010905688.1|2371807_2372326_-	hypothetical protein	NA	Q9XJE3	Lactococcus_phage	100.0	6.3e-89
WP_042747963.1|2372394_2372565_-	hypothetical protein	NA	A0A1P8BMC4	Lactococcus_phage	100.0	3.5e-25
WP_021211865.1|2372564_2372735_-	hypothetical protein	NA	Q9T1Y5	Lactococcus_phage	100.0	6.7e-24
WP_082231521.1|2372731_2372962_-	hypothetical protein	NA	A0A1P8BME4	Lactococcus_phage	98.7	5.9e-39
WP_042747965.1|2372974_2373193_-	hypothetical protein	NA	A0A1P8BMT4	Lactococcus_phage	100.0	1.7e-32
WP_032398537.1|2373489_2373834_+	XRE family transcriptional regulator	NA	A0A1P8BMR9	Lactococcus_phage	100.0	5.3e-60
WP_082231522.1|2373846_2374410_+	hypothetical protein	NA	A0A1P8BMG8	Lactococcus_phage	100.0	1.5e-104
WP_082231523.1|2374421_2374622_+	hypothetical protein	NA	A0A1P8BMQ1	Lactococcus_phage	93.9	6.9e-28
WP_082231524.1|2374680_2375172_+	hypothetical protein	NA	A0A1B1IMF9	Lactococcus_phage	98.2	1.3e-48
WP_082231528.1|2375300_2376368_+|integrase	site-specific integrase	integrase	Q9T1Z2	Lactococcus_phage	96.6	1.3e-194
2379050:2379064	attR	AATCAATTTCTTCTT	NA	NA	NA	NA
