The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP015896	Lactococcus lactis subsp. lactis strain 229 chromosome, complete genome	2468447	12923	54690	2468447	terminase,integrase,transposase,bacteriocin,tRNA	Lactococcus_phage(82.76%)	44	NA	NA
WP_010905029.1|12923_14915_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_010905030.1|14916_15552_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.0	3.9e-24
WP_010905031.1|15752_16223_+	AAA family ATPase	NA	A0A097BYE2	Leuconostoc_phage	30.1	4.0e-10
WP_010905032.1|16240_16807_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010905033.1|16807_20293_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_003132169.1|20452_20923_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003132170.1|21041_21311_+	RNA-binding S4 domain-containing protein	NA	NA	NA	NA	NA
WP_010905035.1|21339_21714_+	septum formation initiator family protein	NA	NA	NA	NA	NA
WP_003132172.1|21713_22037_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010905036.1|22174_23524_+	serine hydrolase	NA	NA	NA	NA	NA
WP_010905037.1|23520_24792_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
WP_010905038.1|24772_25324_+	hypoxanthine phosphoribosyltransferase	NA	A0A1V0SEQ1	Hokovirus	29.7	1.8e-09
WP_003132177.1|25529_27617_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	G8DDJ2	Micromonas_pusilla_virus	49.2	5.4e-107
WP_010905039.1|30564_32502_+	transcription antiterminator	NA	NA	NA	NA	NA
WP_003132182.1|32549_32981_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_003132184.1|33118_34276_+	mannitol-1-phosphate 5-dehydrogenase	NA	NA	NA	NA	NA
WP_010905041.1|35158_35482_-	sigma-70 family RNA polymerase sigma factor	NA	Q9AZI1	Lactococcus_phage	100.0	3.8e-52
WP_010905042.1|35506_35917_-	RinA family protein	NA	Q9AZI2	Lactococcus_phage	100.0	8.0e-71
WP_010905043.1|35913_36357_-|terminase	terminase small subunit	terminase	Q9AZI3	Lactococcus_phage	100.0	7.3e-62
WP_010905044.1|36489_37071_-	hypothetical protein	NA	Q9AZI4	Lactococcus_phage	100.0	2.0e-99
WP_010905045.1|37306_38935_-	DNA primase	NA	Q9AZI5	Lactococcus_phage	100.0	0.0e+00
WP_010905046.1|38945_39740_-	hypothetical protein	NA	Q9AZI6	Lactococcus_phage	100.0	5.4e-156
WP_010905047.1|39743_40073_-	hypothetical protein	NA	Q9AZI7	Lactococcus_phage	100.0	5.2e-57
WP_010905048.1|40059_40254_-	hypothetical protein	NA	Q9AZI8	Lactococcus_phage	100.0	2.3e-28
WP_010905050.1|40501_40741_-	hypothetical protein	NA	Q9AZJ0	Lactococcus_phage	100.0	1.6e-39
WP_010905051.1|40783_41065_-	hypothetical protein	NA	Q9AZJ1	Lactococcus_phage	100.0	8.5e-48
WP_010905052.1|41061_41313_-	helix-turn-helix transcriptional regulator	NA	Q9AZJ2	Lactococcus_phage	100.0	1.7e-39
WP_010905053.1|41309_41831_-	hypothetical protein	NA	Q9AZJ3	Lactococcus_phage	100.0	1.5e-93
WP_010905054.1|41834_42029_-	DUF1655 domain-containing protein	NA	Q9AZJ4	Lactococcus_phage	100.0	7.9e-29
WP_010905055.1|42104_42845_-	Rha family transcriptional regulator	NA	Q9AZJ5	Lactococcus_phage	100.0	4.1e-134
WP_015966790.1|42873_43071_-	hypothetical protein	NA	Q9AZJ6	Lactococcus_phage	100.0	1.3e-26
WP_003132198.1|43331_43718_+	helix-turn-helix transcriptional regulator	NA	Q9AZJ7	Lactococcus_phage	100.0	7.3e-66
WP_003132200.1|43727_44282_+	hypothetical protein	NA	Q9AZJ8	Lactococcus_phage	100.0	8.1e-111
WP_003132204.1|44392_44623_+	hypothetical protein	NA	Q9AZK0	Lactococcus_phage	100.0	3.7e-17
WP_003132205.1|44695_44890_+	hypothetical protein	NA	Q9AZK1	Lactococcus_phage	100.0	6.0e-29
WP_010905057.1|45041_45284_+	hypothetical protein	NA	Q9AZK2	Lactococcus_phage	100.0	4.6e-34
WP_010905058.1|45419_45644_+	hypothetical protein	NA	Q9AZK3	Lactococcus_phage	100.0	4.5e-36
WP_011834160.1|46110_46437_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010905061.1|47344_47509_+|bacteriocin	bacteriocin	bacteriocin	Q9AZK6	Lactococcus_phage	100.0	7.9e-22
WP_010905062.1|47630_47936_+|bacteriocin	bacteriocin immunity protein	bacteriocin	Q9AZK7	Lactococcus_phage	100.0	8.3e-49
WP_010905063.1|48185_49370_+|integrase	site-specific integrase	integrase	Q9AZK8	Lactococcus_phage	100.0	1.9e-226
WP_010905064.1|49822_50272_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010905065.1|50348_50591_+	TM2 domain-containing protein	NA	NA	NA	NA	NA
WP_095559415.1|53542_54690_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	41.0	2.3e-46
>prophage 2
NZ_CP015896	Lactococcus lactis subsp. lactis strain 229 chromosome, complete genome	2468447	66906	111059	2468447	bacteriocin,transposase,protease,tRNA	Bacillus_phage(44.44%)	46	NA	NA
WP_010905081.1|66906_67932_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010905082.1|68433_68871_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010905083.1|69031_70345_+	APC family permease	NA	NA	NA	NA	NA
WP_010905084.1|70404_70755_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010905085.1|70813_71809_-	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_010905086.1|71911_72724_-	HAD family hydrolase	NA	NA	NA	NA	NA
WP_010905087.1|72849_74487_-	ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	25.9	5.3e-49
WP_010905088.1|75614_76895_-	O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase	NA	A0A2I2L687	Orpheovirus	26.9	1.4e-09
WP_010905089.1|77121_77955_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010905090.1|78355_78823_+	universal stress protein	NA	NA	NA	NA	NA
WP_010905091.1|78951_79149_+	DUF4649 domain-containing protein	NA	NA	NA	NA	NA
WP_010905092.1|79179_79800_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010905093.1|79850_81020_+	ring-cleaving dioxygenase	NA	NA	NA	NA	NA
WP_003132255.1|81030_81621_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010905094.1|82218_84366_+	peptide cleavage/export ABC transporter	NA	W8CYL7	Bacillus_phage	26.5	7.2e-38
WP_010905095.1|84380_85802_+	HlyD family secretion protein	NA	NA	NA	NA	NA
WP_021214955.1|85895_86021_+|bacteriocin	lactococcin family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_010905096.1|86262_86715_+	transporter	NA	NA	NA	NA	NA
WP_021214956.1|86753_87410_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010905098.1|87512_87794_-	hypothetical protein	NA	NA	NA	NA	NA
WP_021214957.1|87803_88049_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076996931.1|88340_89660_+|transposase	IS4-like element IS1675 family transposase	transposase	NA	NA	NA	NA
WP_021214958.1|90219_90357_+|bacteriocin	lactococcin family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_010905101.1|90371_91082_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010905102.1|91507_91960_+	transporter	NA	NA	NA	NA	NA
WP_021214959.1|92170_92833_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_120784962.1|93058_94170_-|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	41.4	1.2e-49
WP_010905106.1|94280_94649_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003132256.1|94868_95171_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003132257.1|95172_95340_-|bacteriocin	lactococcin family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_003132258.1|95906_96056_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_010905107.1|96085_96259_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_010905108.1|96622_98404_+	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	29.1	3.8e-61
WP_010905109.1|98456_99242_-	ParB/RepB/Spo0J family partition protein	NA	NA	NA	NA	NA
WP_010905110.1|99296_100556_-	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	45.4	3.5e-93
WP_010905111.1|100599_101088_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010905112.1|101239_101707_+	DUF3013 family protein	NA	NA	NA	NA	NA
WP_010905113.1|101736_103290_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	28.1	3.0e-46
WP_010905114.1|103420_103705_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010905115.1|103742_104231_+	YdeI/OmpD-associated family protein	NA	NA	NA	NA	NA
WP_010905116.1|104248_105202_+	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA	NA
WP_010905117.1|105301_106054_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010905118.1|106082_107039_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_010905119.1|107239_109462_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	U5J9N6	Bacillus_phage	28.3	2.9e-13
WP_003132278.1|109477_110413_-	glycosyltransferase family 2 protein	NA	V9QJB1	Oenococcus_phage	49.7	1.3e-76
WP_010905120.1|110603_111059_+|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
>prophage 3
NZ_CP015896	Lactococcus lactis subsp. lactis strain 229 chromosome, complete genome	2468447	135993	185011	2468447	holin,transposase,protease	Lactococcus_phage(25.0%)	44	NA	NA
WP_010905144.1|135993_136539_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010905145.1|136591_137272_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_095559415.1|137440_138587_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	41.0	2.3e-46
WP_101928107.1|138644_140016_+|transposase	IS3-like element ISLla3 family transposase	transposase	A0A1B1P773	Bacillus_phage	43.8	2.4e-55
WP_095559415.1|140074_141222_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	41.0	2.3e-46
WP_003131820.1|141526_141793_+	IreB family regulatory phosphoprotein	NA	NA	NA	NA	NA
WP_021214669.1|141792_142224_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_003131822.1|142376_142700_+	DUF1292 domain-containing protein	NA	NA	NA	NA	NA
WP_003131824.1|142730_143282_-	DUF1211 domain-containing protein	NA	NA	NA	NA	NA
WP_010905150.1|143376_144162_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010905151.1|144181_144427_-	DUF2316 family protein	NA	NA	NA	NA	NA
WP_010905152.1|144436_145222_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010905153.1|145333_145879_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_021214668.1|145960_147907_-	1,4-alpha-glucan-branching protein	NA	NA	NA	NA	NA
WP_010905154.1|148033_148354_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010905155.1|148825_154777_+	collagen binding domain-containing protein	NA	NA	NA	NA	NA
WP_021214667.1|155552_156593_+	hypothetical protein	NA	NA	NA	NA	NA
WP_081172040.1|156647_157538_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_021037031.1|157691_159272_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011835457.1|159252_160017_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.4	4.5e-27
WP_021216425.1|160139_161039_-	EamA family transporter	NA	NA	NA	NA	NA
WP_023349191.1|161188_162079_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_021214757.1|162083_162413_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010890681.1|162438_162819_-	single-stranded DNA-binding protein	NA	NA	NA	NA	NA
WP_021214758.1|162832_163198_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010890679.1|163268_163535_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010890656.1|163548_164346_-	AAA family ATPase	NA	E2ELL2	Clostridium_phage	38.3	1.8e-18
WP_058147809.1|164879_165866_+	UDP-glucose 4-epimerase GalE	NA	A0A2K9L5H6	Tupanvirus	36.0	3.4e-51
WP_021214774.1|166012_166309_-	recombinase family protein	NA	A0A0A8WIK3	Clostridium_phage	42.7	1.3e-11
WP_023349076.1|166515_166866_-	hypothetical protein	NA	A0A182BQ76	Lactococcus_phage	72.3	1.8e-10
WP_081172042.1|166855_168322_-	Y-family DNA polymerase	NA	Q6DMX4	Streptococcus_phage	51.5	7.7e-124
WP_081172044.1|168517_169630_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076996931.1|169883_171203_+|transposase	IS4-like element IS1675 family transposase	transposase	NA	NA	NA	NA
WP_076996931.1|171497_172817_+|transposase	IS4-like element IS1675 family transposase	transposase	NA	NA	NA	NA
WP_081172046.1|173067_174681_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_081172048.1|174683_176033_+	HNH endonuclease	NA	NA	NA	NA	NA
WP_076996931.1|176394_177714_+|transposase	IS4-like element IS1675 family transposase	transposase	NA	NA	NA	NA
WP_149037262.1|178037_178718_+|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	83.2	5.1e-107
WP_081172050.1|178887_179523_+	type II restriction endonuclease	NA	NA	NA	NA	NA
WP_081172052.1|179817_180930_+	Abi family protein	NA	NA	NA	NA	NA
WP_081172053.1|181435_183607_+	DUF1906 domain-containing protein	NA	NA	NA	NA	NA
WP_145958540.1|183621_184137_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153928081.1|184605_184764_+	hypothetical protein	NA	Q9AZL1	Lactococcus_phage	55.1	3.3e-09
WP_081172059.1|184756_185011_+|holin	phage holin	holin	Q9AZR2	Lactococcus_phage	51.4	9.4e-14
>prophage 4
NZ_CP015896	Lactococcus lactis subsp. lactis strain 229 chromosome, complete genome	2468447	294144	302251	2468447	holin,transposase	Catovirus(33.33%)	8	NA	NA
WP_010905211.1|294144_294981_+|holin	phosphorylcholine transferase LicD	holin	A0A1V0SAS8	Catovirus	31.6	1.3e-06
WP_010905212.1|294970_295972_+	glycosyltransferase	NA	A0A1V0SAH6	Catovirus	33.7	5.0e-10
WP_081172112.1|295973_296834_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_088792927.1|296885_297997_-|transposase	IS3-like element IS981 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	41.4	1.2e-49
WP_010905214.1|298084_299311_+	LPS biosynthesis protein	NA	A0A0S2MYI4	Enterococcus_phage	37.6	4.0e-33
WP_010905215.1|299321_299750_+	glycerol-3-phosphate cytidylyltransferase	NA	A0A221SAS8	Streptomyces_phage	39.3	4.2e-14
WP_010905216.1|299875_300388_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003129822.1|300769_302251_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	2.1e-97
>prophage 5
NZ_CP015896	Lactococcus lactis subsp. lactis strain 229 chromosome, complete genome	2468447	477499	487008	2468447		Streptococcus_phage(44.44%)	11	NA	NA
WP_010905314.1|477499_477889_+	single-stranded DNA-binding protein	NA	A0A0K0MWE1	Streptococcus_phage	45.0	1.4e-24
WP_003131589.1|478008_478293_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	44.1	3.1e-13
WP_003131585.1|478380_480009_+	chaperonin GroEL	NA	A0A219YK78	uncultured_virus	56.8	4.9e-156
WP_003131583.1|480054_480867_-	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	38.1	3.1e-34
WP_010905315.1|481037_482480_-	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	33.0	1.4e-32
WP_003131580.1|482472_483174_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.7	1.2e-42
WP_003131575.1|483351_483987_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	65.0	5.4e-74
WP_003131573.1|484119_484980_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	45.2	5.0e-67
WP_010905316.1|485031_485814_+	stage 0 sporulation family protein	NA	NA	NA	NA	NA
WP_010905317.1|485806_486133_+	DNA replication initiation control protein YabA	NA	NA	NA	NA	NA
WP_010905318.1|486132_487008_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	65.4	8.7e-99
>prophage 6
NZ_CP015896	Lactococcus lactis subsp. lactis strain 229 chromosome, complete genome	2468447	524038	562729	2468447	holin,terminase,integrase,portal,protease,capsid,head,tRNA	Lactococcus_phage(100.0%)	50	526628:526658	563549:563579
WP_003131526.1|524038_524485_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_003131525.1|524481_525000_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010905336.1|525103_526489_+	LCP family protein	NA	NA	NA	NA	NA
526628:526658	attL	TCCCCCTCGGATCATGGTGCCAAACCTCGCC	NA	NA	NA	NA
WP_010905337.1|526720_527854_-|integrase	site-specific integrase	integrase	Q9AZR0	Lactococcus_phage	100.0	2.8e-214
WP_010905338.1|527976_528555_-	SHOCT domain-containing protein	NA	Q9AZQ9	Lactococcus_phage	100.0	9.8e-99
WP_010905339.1|528638_529475_-	helix-turn-helix domain-containing protein	NA	Q9AZQ8	Lactococcus_phage	100.0	6.0e-158
WP_015966779.1|529703_529874_+	putative transcriptional regulator	NA	Q9AZQ7	Lactococcus_phage	100.0	1.0e-24
WP_010905341.1|529905_530139_+	hypothetical protein	NA	Q9AZQ6	Lactococcus_phage	100.0	5.0e-38
WP_015966780.1|530656_530899_+	hypothetical protein	NA	Q77JL3	Lactococcus_phage	100.0	5.2e-38
WP_010905344.1|530910_531666_+	hypothetical protein	NA	Q9AZQ4	Lactococcus_phage	100.0	1.1e-139
WP_010905345.1|531678_532008_+	DUF771 domain-containing protein	NA	Q9AZQ3	Lactococcus_phage	100.0	8.1e-58
WP_010905346.1|532008_532179_+	hypothetical protein	NA	A0A1P8BME6	Lactococcus_phage	100.0	8.7e-24
WP_010905347.1|532222_532396_+	putative transcriptional regulator	NA	Q9AZQ1	Lactococcus_phage	100.0	8.0e-25
WP_010905348.1|532494_533301_+	recombinase RecT	NA	Q9AZQ0	Lactococcus_phage	100.0	6.2e-144
WP_010905349.1|533300_534077_+	hypothetical protein	NA	Q9AZP9	Lactococcus_phage	100.0	2.6e-147
WP_010905350.1|534304_535081_+	phage replisome organiser protein	NA	Q9AZP8	Lactococcus_phage	100.0	2.0e-131
WP_010905351.1|535090_535975_+	ATP-binding protein	NA	Q9AZP7	Lactococcus_phage	100.0	1.6e-164
WP_015966782.1|536125_536536_+	hypothetical protein	NA	Q9AZP5	Lactococcus_phage	100.0	2.2e-76
WP_010905355.1|536782_537145_+	DUF658 family protein	NA	Q9AZP3	Lactococcus_phage	100.0	1.5e-60
WP_010905356.1|537338_537545_+	DUF1125 domain-containing protein	NA	Q9MC26	Lactococcus_phage	100.0	2.6e-30
WP_010905357.1|537537_537810_+	hypothetical protein	NA	Q9AYV0	Lactococcus_phage	100.0	5.3e-47
WP_010905358.1|537806_538361_+	DUF1642 domain-containing protein	NA	Q9AYU5	Lactococcus_phage	100.0	1.6e-103
WP_010905359.1|538357_538777_+	dUTP diphosphatase	NA	Q9AZP1	Lactococcus_phage	100.0	3.0e-73
WP_010905360.1|538776_539067_+	hypothetical protein	NA	Q9AZP0	Lactococcus_phage	100.0	2.5e-47
WP_010905363.1|539416_539599_+	DUF1660 domain-containing protein	NA	Q9AZN7	Lactococcus_phage	100.0	1.8e-30
WP_010905365.1|539780_539966_+	hypothetical protein	NA	Q9AZN6	Lactococcus_phage	100.0	1.6e-26
WP_010905366.1|540018_540228_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010905367.1|540440_540734_+	DUF1359 domain-containing protein	NA	Q9AZN4	Lactococcus_phage	100.0	9.7e-47
WP_010905368.1|540845_541091_+	helix-turn-helix transcriptional regulator	NA	Q9AZN3	Lactococcus_phage	100.0	4.5e-37
WP_010905369.1|541135_541525_+	DUF1359 domain-containing protein	NA	Q9AZN2	Lactococcus_phage	100.0	5.8e-63
WP_010905370.1|541526_541925_+	hypothetical protein	NA	Q9AZN1	Lactococcus_phage	100.0	2.4e-64
WP_010905372.1|542250_542673_+	RinA family protein	NA	Q9AZM9	Lactococcus_phage	100.0	8.5e-52
WP_010905373.1|542910_543414_+	HNH endonuclease	NA	Q9AZM8	Lactococcus_phage	100.0	3.1e-93
WP_010905374.1|543530_543983_+|terminase	phage terminase small subunit P27 family	terminase	Q9AZM7	Lactococcus_phage	100.0	1.3e-82
WP_015966785.1|543982_545797_+|terminase	terminase large subunit	terminase	Q9AZM6	Lactococcus_phage	100.0	0.0e+00
WP_010905377.1|545966_547046_+|portal	phage portal protein	portal	Q9AZM4	Lactococcus_phage	100.0	2.4e-199
WP_010905378.1|547045_547633_+|head,protease	HK97 family phage prohead protease	head,protease	Q9AZM3	Lactococcus_phage	100.0	4.4e-107
WP_010905379.1|547622_548936_+|capsid	phage major capsid protein	capsid	Q9AZM2	Lactococcus_phage	100.0	2.0e-200
WP_010905380.1|548946_549252_+	hypothetical protein	NA	Q9AZM1	Lactococcus_phage	100.0	4.4e-50
WP_010905381.1|549238_549574_+|head	phage head closure protein	head	Q9AZM0	Lactococcus_phage	100.0	5.9e-56
WP_010905382.1|549570_550056_+	HK97 gp10 family phage protein	NA	Q9AZL9	Lactococcus_phage	100.0	8.8e-85
WP_010905384.1|550448_551054_+	small major structural protein	NA	Q9AZL7	Lactococcus_phage	100.0	4.9e-109
WP_010905385.1|551113_551458_+	hypothetical protein	NA	Q9AZL6	Lactococcus_phage	100.0	1.2e-27
WP_021166226.1|551475_551646_+	hypothetical protein	NA	NA	NA	NA	NA
WP_021214765.1|551663_555467_+	tape measure protein	NA	Q9AZL5	Lactococcus_phage	100.0	0.0e+00
WP_010905387.1|555469_557005_+	hypothetical protein	NA	Q9AZL3	Lactococcus_phage	100.0	4.8e-294
WP_010905388.1|557004_561330_+	hypothetical protein	NA	Q9AZL2	Lactococcus_phage	100.0	0.0e+00
WP_010905389.1|561349_561676_+	hypothetical protein	NA	Q9AZL1	Lactococcus_phage	100.0	3.9e-52
WP_010905390.1|561662_561950_+|holin	phage holin	holin	Q9AZL0	Lactococcus_phage	100.0	5.6e-47
WP_010905391.1|561949_562729_+	muramidase	NA	Q9AZK9	Lactococcus_phage	100.0	2.1e-128
563549:563579	attR	TCCCCCTCGGATCATGGTGCCAAACCTCGCC	NA	NA	NA	NA
>prophage 7
NZ_CP015896	Lactococcus lactis subsp. lactis strain 229 chromosome, complete genome	2468447	680559	728516	2468447	protease,transposase,integrase,tRNA	Bacillus_phage(26.67%)	40	699883:699942	717351:717462
WP_003129541.1|680559_681444_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_003129542.1|681526_682195_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003129543.1|682365_683262_+	SPFH domain-containing protein	NA	A0A1V0SL90	Klosneuvirus	34.8	1.8e-35
WP_003129544.1|683636_683897_+	membrane protein	NA	NA	NA	NA	NA
WP_003129545.1|684254_685178_+	ribonuclease Z	NA	NA	NA	NA	NA
WP_010905467.1|685170_685872_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010905468.1|686038_688267_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	30.4	1.3e-79
WP_012897343.1|688389_688902_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	44.0	9.1e-32
WP_003129551.1|689117_689681_+	DNA-directed RNA polymerase subunit delta	NA	NA	NA	NA	NA
WP_010905469.1|689817_691470_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_025016857.1|691529_692003_+	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_101928132.1|692121_693269_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	41.0	2.3e-46
WP_120784970.1|693342_694715_-|transposase	IS3-like element ISLla3 family transposase	transposase	A0A1B1P773	Bacillus_phage	43.1	3.0e-53
WP_010905471.1|694914_695370_+	CtsR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010905472.1|695359_697810_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A223W0B1	Agrobacterium_phage	34.0	5.7e-124
WP_003129564.1|697944_698502_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_010905473.1|698686_699988_+	phosphopyruvate hydratase	NA	A0A1X9I5Z8	Streptococcus_phage	87.6	4.0e-217
699883:699942	attL	TACAGACCGTATGGCTAAATACAACCAATTGCTTCGTATCGAAGACCAATTGGCTGAAGT	NA	NA	NA	NA
WP_031297127.1|700075_701011_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A142F1N9	Bacillus_phage	27.5	4.0e-25
WP_010905475.1|701283_702051_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010905476.1|702638_702779_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010905477.1|703094_703277_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010905478.1|703298_704468_+	hypothetical protein	NA	V9VGE4	Lactococcus_phage	40.4	1.1e-37
WP_010905479.1|706340_709328_+	type I restriction endonuclease subunit R	NA	A0A220A398	Liberibacter_phage	26.4	5.5e-20
WP_010905480.1|709367_710915_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	39.1	1.4e-99
WP_010905481.1|710911_712135_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	30.7	1.6e-34
WP_161940567.1|712339_713338_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010905484.1|713499_713769_+	hypothetical protein	NA	NA	NA	NA	NA
WP_021211383.1|714070_714271_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010905486.1|714536_715307_+	hypothetical protein	NA	NA	NA	NA	NA
WP_123174237.1|715717_716829_-|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	41.1	4.2e-50
WP_010905491.1|717570_718242_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.0	1.6e-28
717351:717462	attR	TACAGACCGTATGGCTAAATACAACCAATTGCTTCGTATCGAAGACCAATTGGCTGAAGTGGCTCAATACAAAGGTCTTAAAGCATTCTACAACCTTAAAAAATAAGGTTTA	NA	NA	NA	NA
WP_003129569.1|718244_719318_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010905492.1|719329_719899_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010905493.1|720086_721610_-	acyl-CoA synthetase	NA	NA	NA	NA	NA
WP_003129577.1|721801_722719_+	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
WP_003129579.1|722979_725343_+	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	32.0	9.5e-108
WP_010905495.1|725474_726134_+	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010905496.1|726136_727354_+	multidrug efflux MFS transporter	NA	NA	NA	NA	NA
WP_003129585.1|727350_727497_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023349185.1|727625_728516_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP015896	Lactococcus lactis subsp. lactis strain 229 chromosome, complete genome	2468447	986234	1046615	2468447	holin,transposase,plate	Lactococcus_phage(26.67%)	58	NA	NA
WP_081172132.1|986234_986459_+|holin	holin	holin	A0A1B1IN04	Lactococcus_phage	97.3	2.3e-32
WP_081172134.1|986470_988033_+|plate	BppU family phage baseplate upper protein	plate	Q9AZR3	Lactococcus_phage	94.0	1.9e-237
WP_023164507.1|988058_988346_+|holin	phage holin	holin	Q9AZL0	Lactococcus_phage	98.9	1.6e-46
WP_081172136.1|988345_989125_+|holin	phage holin	holin	Q9AZW7	Lactococcus_phage	98.1	1.9e-126
WP_149037265.1|989223_989862_+	hypothetical protein	NA	NA	NA	NA	NA
WP_058225228.1|989999_990272_+	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_003131387.1|990343_990877_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010905604.1|991040_993440_+	YhgE/Pip domain-containing protein	NA	NA	NA	NA	NA
WP_003131392.1|993625_993958_+	metal-sulfur cluster assembly factor	NA	NA	NA	NA	NA
WP_010905605.1|994807_996007_+	FtsW/RodA/SpoVE family cell cycle protein	NA	NA	NA	NA	NA
WP_081172140.1|996037_997336_+	LCP family protein	NA	NA	NA	NA	NA
WP_010905608.1|997438_997708_+	30S ribosomal protein S14	NA	NA	NA	NA	NA
WP_010905609.1|997873_998503_+	cell wall-active antibiotics response protein	NA	NA	NA	NA	NA
WP_021214569.1|998499_999498_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_003131402.1|999525_1000155_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003131403.1|1000225_1001032_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_003131404.1|1001134_1001725_+	peptidylprolyl isomerase	NA	A0A2H4UTF4	Bodo_saltans_virus	42.5	1.0e-26
WP_010905611.1|1001726_1002158_+	S1 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_003131406.1|1002154_1002760_+	TVP38/TMEM64 family protein	NA	M1Q152	Streptococcus_phage	36.9	2.2e-29
WP_081172142.1|1002861_1003752_-|transposase	IS982-like element ISLll1 family transposase	transposase	NA	NA	NA	NA
WP_010905612.1|1003987_1005232_+	FtsW/RodA/SpoVE family cell cycle protein	NA	NA	NA	NA	NA
WP_010905613.1|1005456_1006527_+	2,3-butanediol dehydrogenase	NA	M1PHA2	Moumouvirus	27.0	1.2e-06
WP_003131411.1|1006552_1007314_+	(S)-acetoin forming diacetyl reductase	NA	NA	NA	NA	NA
WP_081172144.1|1007833_1009375_+	ABC-F type ribosomal protection protein	NA	A0A2K9L0W2	Tupanvirus	25.0	2.4e-27
WP_010905616.1|1009791_1011414_+	NAD-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010905617.1|1011428_1012706_+	citrate:sodium symporter	NA	NA	NA	NA	NA
WP_010905618.1|1013002_1013935_+	EamA family transporter	NA	NA	NA	NA	NA
WP_010905619.1|1014015_1015107_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003131420.1|1015160_1015808_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_003131421.1|1015960_1017916_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	44.6	2.4e-141
WP_003131422.1|1018021_1018210_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003131423.1|1018422_1019160_+	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	57.2	7.3e-83
WP_003131424.1|1019292_1019946_+	DUF4767 domain-containing protein	NA	NA	NA	NA	NA
WP_012897558.1|1020095_1020560_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_021214567.1|1020552_1022097_+	multidrug efflux MFS transporter	NA	NA	NA	NA	NA
WP_010905623.1|1022096_1022816_+	DUF4811 domain-containing protein	NA	NA	NA	NA	NA
WP_010905624.1|1023570_1023906_+	helix-turn-helix transcriptional regulator	NA	A0A1S5SAD3	Streptococcus_phage	44.3	3.9e-07
WP_014570502.1|1024076_1024922_+	exopolysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003131430.1|1024945_1025230_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003131431.1|1025250_1025718_+	potassium channel protein	NA	A0A1B0Y2S3	Lactobacillus_phage	38.6	1.1e-15
WP_003131432.1|1025714_1027115_+	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	25.8	7.3e-15
WP_003131434.1|1027114_1027924_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010905627.1|1027945_1029388_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010905628.1|1029368_1032260_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_003131438.1|1032272_1032827_+	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA	NA
WP_058147759.1|1032819_1034451_+	XcbB/CpsF family capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_021214565.1|1034495_1036919_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010905631.1|1036967_1037699_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_031296506.1|1037959_1038859_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010905633.1|1038876_1039317_+	glycerol-3-phosphate cytidylyltransferase	NA	A0A221SAS8	Streptomyces_phage	37.9	1.3e-13
WP_003130273.1|1039353_1039785_+	hypothetical protein	NA	NA	NA	NA	NA
WP_021214563.1|1039805_1040993_+	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA	NA
WP_010905635.1|1040982_1042098_+	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA	NA
WP_010905636.1|1042108_1043029_+	LCP family protein	NA	NA	NA	NA	NA
WP_010905637.1|1043214_1044450_+	phosphopentomutase	NA	NA	NA	NA	NA
WP_004255008.1|1044505_1044775_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004255010.1|1044845_1045550_+	purine-nucleoside phosphorylase	NA	NA	NA	NA	NA
WP_003130410.1|1045667_1046615_+|transposase	IS30 family transposase	transposase	H7BVY4	unidentified_phage	33.0	3.4e-32
>prophage 9
NZ_CP015896	Lactococcus lactis subsp. lactis strain 229 chromosome, complete genome	2468447	1087611	1101395	2468447		Enterococcus_phage(25.0%)	11	NA	NA
WP_081172146.1|1087611_1088304_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	34.4	3.6e-31
WP_010905664.1|1088296_1089232_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003130966.1|1089333_1090311_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	66.2	2.4e-118
WP_003130967.1|1090660_1092829_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	61.1	3.0e-257
WP_003130968.1|1092964_1093387_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A142F1R4	Bacillus_phage	37.3	2.3e-12
WP_012897612.1|1093388_1093607_-	redoxin NrdH	NA	C3U2K9	Lactococcus_phage	47.6	7.6e-12
WP_010905665.1|1093780_1094422_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_003130974.1|1094696_1096631_+	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	43.4	5.4e-125
WP_003130976.1|1097366_1098200_+	3'-5' exonuclease	NA	A0A0K2SUJ2	Clostridium_phage	39.4	3.1e-21
WP_003130977.1|1098196_1098646_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003130980.1|1098920_1101395_+	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	32.2	4.2e-98
>prophage 10
NZ_CP015896	Lactococcus lactis subsp. lactis strain 229 chromosome, complete genome	2468447	1110053	1118321	2468447		Staphylococcus_phage(50.0%)	9	NA	NA
WP_021214550.1|1110053_1111142_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	39.1	2.9e-51
WP_003130990.1|1111141_1111792_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	43.6	1.2e-41
WP_010905673.1|1111800_1112997_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	51.0	1.3e-110
WP_010905674.1|1113024_1113489_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	53.0	5.3e-39
WP_003130994.1|1113591_1114044_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_003130995.1|1114104_1115010_+	RluA family pseudouridine synthase	NA	A0A2H4UV25	Bodo_saltans_virus	28.2	5.4e-11
WP_003130996.1|1115156_1115600_+	divergent PAP2 family protein	NA	NA	NA	NA	NA
WP_031296488.1|1115739_1117362_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010905676.1|1117364_1118321_+	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	37.5	3.1e-49
>prophage 11
NZ_CP015896	Lactococcus lactis subsp. lactis strain 229 chromosome, complete genome	2468447	1121651	1193850	2468447	holin,terminase,transposase,portal,integrase,protease,tail,capsid,head,tRNA	Lactococcus_phage(84.85%)	98	1115663:1115679	1161860:1161876
1115663:1115679	attL	GTAAAAAATGAGAAATT	NA	NA	NA	NA
WP_081172142.1|1121651_1122542_-|transposase	IS982-like element ISLll1 family transposase	transposase	NA	NA	NA	NA
WP_081172149.1|1122848_1124666_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	M1HVL7	Paramecium_bursaria_Chlorella_virus	36.9	6.0e-94
WP_003131898.1|1124796_1125477_+	RadC family protein	NA	NA	NA	NA	NA
WP_010905679.1|1125675_1126800_-|integrase	site-specific integrase	integrase	Q9B016	Lactococcus_phage	100.0	1.0e-213
WP_023349242.1|1126922_1127468_-	hypothetical protein	NA	Q9B015	Lactococcus_phage	99.4	2.6e-93
WP_010905681.1|1127524_1127962_-	ImmA/IrrE family metallo-endopeptidase	NA	Q9B014	Lactococcus_phage	100.0	1.1e-81
WP_010905682.1|1127958_1128501_-	helix-turn-helix domain-containing protein	NA	Q9B013	Lactococcus_phage	100.0	3.1e-91
WP_010905683.1|1128669_1128888_+	DUF739 family protein	NA	O48504	Lactococcus_phage	100.0	2.9e-35
WP_010905684.1|1128924_1129668_+	hypothetical protein	NA	Q9B012	Lactococcus_phage	100.0	2.1e-138
WP_003131910.1|1129680_1130016_+	DUF771 domain-containing protein	NA	Q38331	Lactococcus_phage	100.0	1.3e-58
WP_010905685.1|1130153_1130348_+	hypothetical protein	NA	Q77JL6	Lactococcus_phage	100.0	3.0e-28
WP_023349243.1|1130344_1130620_-	hypothetical protein	NA	Q9AYU7	Lactococcus_phage	98.9	3.5e-46
WP_015966756.1|1130722_1130938_+	DUF1408 domain-containing protein	NA	Q9XJE1	Lactococcus_phage	100.0	3.1e-34
WP_010905688.1|1131053_1131572_+	hypothetical protein	NA	Q9XJE3	Lactococcus_phage	100.0	6.3e-89
WP_010905689.1|1131580_1132204_+	DUF1071 domain-containing protein	NA	Q9B009	Lactococcus_phage	100.0	1.9e-116
WP_010905690.1|1132203_1132656_+	single-stranded DNA-binding protein	NA	Q9B008	Lactococcus_phage	100.0	4.6e-80
WP_015966758.1|1132780_1133563_+	phage replisome organiser protein	NA	A5GYR3	Lactococcus_phage	100.0	3.7e-125
WP_015966759.1|1133562_1134288_+	hypothetical protein	NA	Q9XJE7	Lactococcus_phage	100.0	1.8e-134
WP_002819817.1|1134284_1134674_+	RusA family crossover junction endodeoxyribonuclease	NA	R9QLL1	Lactococcus_phage	100.0	3.2e-69
WP_010905693.1|1134676_1134871_+	hypothetical protein	NA	Q9B005	Lactococcus_phage	100.0	6.7e-28
WP_031297271.1|1134863_1135103_+	DUF1031 family protein	NA	Q9B004	Lactococcus_phage	98.7	1.1e-37
WP_010905695.1|1135214_1135481_+	hypothetical protein	NA	Q9B003	Lactococcus_phage	100.0	6.3e-45
WP_010905696.1|1135502_1135682_+	DUF1497 domain-containing protein	NA	Q9AYU3	Lactococcus_phage	100.0	9.2e-24
WP_010905697.1|1135671_1136241_+	DUF658 family protein	NA	Q9B002	Lactococcus_phage	100.0	2.8e-90
WP_010905356.1|1136434_1136641_+	DUF1125 domain-containing protein	NA	Q9MC26	Lactococcus_phage	100.0	2.6e-30
WP_010905357.1|1136633_1136906_+	hypothetical protein	NA	Q9AYV0	Lactococcus_phage	100.0	5.3e-47
WP_010905358.1|1136902_1137457_+	DUF1642 domain-containing protein	NA	Q9AYU5	Lactococcus_phage	100.0	1.6e-103
WP_010905698.1|1137453_1137873_+	dUTP diphosphatase	NA	Q9B001	Lactococcus_phage	100.0	5.1e-73
WP_010905699.1|1137875_1138373_+	hypothetical protein	NA	Q9B000	Lactococcus_phage	100.0	2.2e-91
WP_010905700.1|1138362_1138710_+	hypothetical protein	NA	Q9AZZ9	Lactococcus_phage	100.0	4.5e-59
WP_010905702.1|1138942_1139128_+	hypothetical protein	NA	Q9AZZ7	Lactococcus_phage	100.0	2.4e-27
WP_010905703.1|1139169_1139343_+	DUF1660 domain-containing protein	NA	Q9AZZ6	Lactococcus_phage	100.0	1.9e-29
WP_010905704.1|1139343_1139643_+	hypothetical protein	NA	Q9AZZ5	Lactococcus_phage	100.0	4.8e-49
WP_010905705.1|1139639_1139822_+	hypothetical protein	NA	Q9AZZ4	Lactococcus_phage	100.0	4.3e-29
WP_010905707.1|1140185_1140479_+	DUF1359 domain-containing protein	NA	Q9AZZ2	Lactococcus_phage	100.0	4.4e-47
WP_010905708.1|1140556_1140958_+	RinA family protein	NA	Q9AZZ1	Lactococcus_phage	100.0	5.6e-69
WP_010905709.1|1141068_1141521_+	HNH endonuclease	NA	Q9AZZ0	Lactococcus_phage	100.0	2.7e-88
WP_010905710.1|1141612_1141981_+|terminase	P27 family phage terminase small subunit	terminase	Q9AZY9	Lactococcus_phage	100.0	1.8e-61
WP_010905711.1|1141964_1143743_+|terminase	terminase large subunit	terminase	Q9AZY8	Lactococcus_phage	100.0	0.0e+00
WP_161908439.1|1143837_1144962_+|portal	phage portal protein	portal	Q9AZY7	Lactococcus_phage	100.0	8.8e-213
WP_010905713.1|1144976_1145573_+|head,protease	HK97 family phage prohead protease	head,protease	Q9AZY6	Lactococcus_phage	100.0	5.5e-105
WP_010905714.1|1145544_1146738_+|capsid	phage major capsid protein	capsid	Q9AZY5	Lactococcus_phage	100.0	3.6e-172
WP_010905715.1|1146792_1147650_+	hypothetical protein	NA	Q9AZY4	Lactococcus_phage	100.0	1.1e-167
WP_010905716.1|1147642_1147924_+	hypothetical protein	NA	Q9AZY3	Lactococcus_phage	100.0	6.7e-45
WP_010905717.1|1147910_1148228_+|head	phage head closure protein	head	Q9AZY2	Lactococcus_phage	99.0	4.6e-50
WP_010905718.1|1148217_1148589_+	hypothetical protein	NA	Q9AZY1	Lactococcus_phage	100.0	2.5e-63
WP_010905719.1|1148585_1148903_+	hypothetical protein	NA	Q9AZY0	Lactococcus_phage	100.0	7.5e-53
WP_010905720.1|1148920_1149529_+|tail	phage tail protein	tail	Q9AZX9	Lactococcus_phage	100.0	3.3e-105
WP_010905721.1|1149538_1149898_+	hypothetical protein	NA	Q9AZX8	Lactococcus_phage	100.0	2.7e-62
WP_032947787.1|1149948_1150101_+	hypothetical protein	NA	A0A2H4JHE4	uncultured_Caudovirales_phage	53.1	1.3e-07
WP_010905723.1|1150114_1152376_+|tail	phage tail tape measure protein	tail	Q9AZX7	Lactococcus_phage	100.0	0.0e+00
WP_010905724.1|1152376_1153126_+	hypothetical protein	NA	Q9AZX6	Lactococcus_phage	99.6	1.5e-144
WP_023349144.1|1153122_1155807_+	peptidoglycan DD-metalloendopeptidase family protein	NA	Q9AZX5	Lactococcus_phage	99.9	0.0e+00
WP_010905726.1|1155819_1157421_+	DUF2479 domain-containing protein	NA	Q9AZX4	Lactococcus_phage	100.0	0.0e+00
WP_010905727.1|1157413_1158244_+	hypothetical protein	NA	Q9AZX3	Lactococcus_phage	100.0	3.1e-154
WP_010905729.1|1158696_1159035_+	hypothetical protein	NA	Q9AZX1	Lactococcus_phage	100.0	1.3e-55
WP_010905730.1|1159036_1159264_+	hypothetical protein	NA	Q9AZX0	Lactococcus_phage	100.0	1.6e-33
WP_010905731.1|1159289_1159514_+|holin	holin	holin	Q9AZW9	Lactococcus_phage	100.0	1.0e-32
WP_010905732.1|1159526_1159814_+|holin	phage holin	holin	Q9AZW8	Lactococcus_phage	100.0	9.5e-47
WP_010905733.1|1159813_1160593_+	muramidase	NA	Q9AZW7	Lactococcus_phage	100.0	5.5e-129
WP_023349143.1|1161094_1161745_-	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
WP_003132739.1|1161969_1162362_+	Spx/MgsR family RNA polymerase-binding regulatory protein	NA	NA	NA	NA	NA
1161860:1161876	attR	GTAAAAAATGAGAAATT	NA	NA	NA	NA
WP_021214548.1|1162539_1164447_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	28.9	1.6e-49
WP_010905736.1|1164635_1165436_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003132744.1|1165437_1165803_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003132749.1|1166318_1166504_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010905739.1|1166678_1167536_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003132752.1|1167782_1168514_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012897690.1|1168526_1168706_+	hypothetical protein	NA	NA	NA	NA	NA
WP_017864422.1|1168739_1168928_+	hypothetical protein	NA	NA	NA	NA	NA
WP_021214547.1|1168992_1169154_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003132758.1|1169735_1170365_+	orotate phosphoribosyltransferase	NA	Q58MW1	Prochlorococcus_phage	27.4	1.4e-05
WP_031296484.1|1170519_1171791_+	dihydroorotase	NA	NA	NA	NA	NA
WP_010905741.1|1172197_1172866_+	DnaD domain-containing protein	NA	C5J987	Streptococcus_phage	32.6	1.5e-05
WP_003130627.1|1172887_1173544_+	endonuclease III	NA	NA	NA	NA	NA
WP_003130628.1|1173536_1174229_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_010905742.1|1174225_1174999_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_010905743.1|1175037_1175403_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003130632.1|1175524_1176340_-	sugar-phosphatase	NA	NA	NA	NA	NA
WP_003130634.1|1176386_1177748_-	HD domain-containing protein	NA	A0A1B1ISR1	uncultured_Mediterranean_phage	34.3	1.2e-25
WP_010905744.1|1177916_1178324_+	DUF1934 domain-containing protein	NA	NA	NA	NA	NA
WP_010905745.1|1178316_1179492_+	DUF998 domain-containing protein	NA	NA	NA	NA	NA
WP_010905746.1|1179661_1179976_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003130645.1|1179978_1180314_+|protease	ribosomal-processing cysteine protease Prp	protease	NA	NA	NA	NA
WP_003130646.1|1180315_1180600_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003130649.1|1182165_1183134_+	phosphate starvation-inducible protein PhoH	NA	H6X2N1	Pseudomonas_phage	50.5	5.9e-48
WP_003130650.1|1183191_1183671_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003130652.1|1183822_1184311_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_003130653.1|1184294_1184750_+	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_003130655.1|1184763_1185342_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010905750.1|1185375_1186026_-	ComF family protein	NA	NA	NA	NA	NA
WP_021214546.1|1186022_1187345_-	DEAD/DEAH box helicase	NA	A0A1X9I5S6	Streptococcus_phage	51.1	9.0e-116
WP_021214545.1|1187401_1188031_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	53.0	7.2e-55
WP_003130662.1|1188164_1188662_+	VanZ family protein	NA	NA	NA	NA	NA
WP_003130663.1|1188709_1189729_+	DUF475 domain-containing protein	NA	K4JUR1	Caulobacter_phage	43.5	1.1e-55
WP_010905753.1|1189838_1190591_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_003130667.1|1190875_1191829_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_003130669.1|1191828_1193850_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
>prophage 12
NZ_CP015896	Lactococcus lactis subsp. lactis strain 229 chromosome, complete genome	2468447	1607295	1617596	2468447		Synechococcus_phage(33.33%)	8	NA	NA
WP_003130058.1|1607295_1608852_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	45.6	2.3e-70
WP_003130055.1|1609027_1609570_-	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	29.9	1.8e-09
WP_010906016.1|1609706_1610744_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA	NA
WP_003130052.1|1610874_1611405_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010906017.1|1611455_1613045_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	22.2	3.0e-09
WP_003130044.1|1613211_1613760_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	31.1	2.8e-18
WP_010906018.1|1613787_1614804_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A0E3FGG1	Synechococcus_phage	40.4	6.4e-61
WP_003130040.1|1614992_1617596_-	ATP-dependent chaperone ClpB	NA	K4FB40	Cronobacter_phage	32.8	9.4e-125
>prophage 13
NZ_CP015896	Lactococcus lactis subsp. lactis strain 229 chromosome, complete genome	2468447	1634183	1735523	2468447	holin,capsid,terminase,transposase,portal,plate,protease,tail,bacteriocin,head,tRNA	Lactococcus_phage(80.0%)	103	NA	NA
WP_088792927.1|1634183_1635295_-|transposase	IS3-like element IS981 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	41.4	1.2e-49
WP_003130008.1|1635599_1636247_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010906030.1|1636250_1638683_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010906031.1|1638862_1639909_-	zinc-dependent alcohol dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003130676.1|1640020_1640290_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_003130677.1|1640349_1641057_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003130679.1|1641173_1642109_-	dihydroorotate oxidase	NA	A0A1V0SH91	Hokovirus	46.0	3.0e-65
WP_003130680.1|1642249_1642801_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_003130682.1|1642810_1643785_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_003130684.1|1643810_1643993_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003130686.1|1643999_1645871_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	30.4	1.6e-54
WP_003130693.1|1647069_1648146_-	iron-containing alcohol dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003130695.1|1648248_1648794_-	hypothetical protein	NA	NA	NA	NA	NA
WP_161908442.1|1648908_1650327_-	C69 family dipeptidase	NA	NA	NA	NA	NA
WP_003130698.1|1650448_1651645_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	48.6	3.0e-41
WP_003130700.1|1651864_1652401_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010906032.1|1652449_1653232_-	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA	NA
WP_010906033.1|1653332_1654178_-	DegV family protein	NA	A0A1X9I5J4	Streptococcus_phage	20.3	7.0e-05
WP_003130704.1|1654195_1654588_-	DUF1149 family protein	NA	NA	NA	NA	NA
WP_003130706.1|1654713_1655457_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_003130707.1|1655461_1655977_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010906034.1|1656148_1656976_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003130709.1|1657116_1658061_-	ferrochelatase	NA	NA	NA	NA	NA
WP_003130710.1|1658322_1658562_-	KH domain-containing protein	NA	NA	NA	NA	NA
WP_003130711.1|1658657_1658930_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010906035.1|1659018_1660251_-	hydroxymethylglutaryl-CoA reductase, degradative	NA	NA	NA	NA	NA
WP_003130713.1|1660330_1661491_-	thiolase family protein	NA	NA	NA	NA	NA
WP_021214458.1|1661778_1662933_+	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA	NA
WP_003130716.1|1662993_1663701_-	glucosamine-6-phosphate deaminase	NA	NA	NA	NA	NA
WP_003130718.1|1663852_1664815_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003130719.1|1665111_1666149_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003130721.1|1666225_1666537_-	helix-turn-helix transcriptional regulator	NA	A0A1S5SAD3	Streptococcus_phage	40.8	3.3e-08
WP_021214457.1|1667913_1672863_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010906039.1|1672899_1673655_-	WxL domain-containing protein	NA	NA	NA	NA	NA
WP_010906040.1|1673692_1674451_-	WxL domain-containing protein	NA	NA	NA	NA	NA
WP_003130736.1|1675307_1676153_-	WxL domain-containing protein	NA	NA	NA	NA	NA
WP_010906043.1|1677125_1677743_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003130743.1|1677954_1679268_-	GTPase ObgE	NA	NA	NA	NA	NA
WP_003130744.1|1679417_1680596_-	cell division protein FtsQ/DivIB	NA	NA	NA	NA	NA
WP_003130746.1|1680596_1681670_-	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA	NA
WP_003130748.1|1681879_1683232_-	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA	NA
WP_010906046.1|1683722_1684064_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_003130753.1|1684195_1685437_-	ammonium transporter	NA	NA	NA	NA	NA
WP_010906048.1|1685619_1687095_-	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	33.1	1.5e-26
WP_003130756.1|1687102_1687795_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	34.1	5.3e-35
WP_003130758.1|1687950_1688481_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_003130760.1|1688611_1688857_-	type B 50S ribosomal protein L31	NA	NA	NA	NA	NA
WP_003130761.1|1689012_1689477_-	hypothetical protein	NA	A0A1P8BMT7	Lactococcus_phage	37.6	2.8e-16
WP_010906050.1|1689558_1689921_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003130764.1|1690405_1690936_-	CHAP domain-containing protein	NA	NA	NA	NA	NA
WP_003130766.1|1690996_1691833_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_081172136.1|1693169_1693949_-|holin	phage holin	holin	Q9AZW7	Lactococcus_phage	98.1	1.9e-126
WP_023164507.1|1693948_1694236_-|holin	phage holin	holin	Q9AZL0	Lactococcus_phage	98.9	1.6e-46
WP_081172134.1|1694261_1695824_-|plate	BppU family phage baseplate upper protein	plate	Q9AZR3	Lactococcus_phage	94.0	1.9e-237
WP_081172132.1|1695835_1696060_-|holin	holin	holin	A0A1B1IN04	Lactococcus_phage	97.3	2.3e-32
WP_081172167.1|1696079_1698104_-	hypothetical protein	NA	Q9AZR5	Lactococcus_phage	54.8	3.7e-209
WP_081172171.1|1698254_1699376_-	hypothetical protein	NA	A0A1B1IN38	Lactococcus_phage	87.7	7.5e-180
WP_081172173.1|1699391_1701179_-	hypothetical protein	NA	Q9AZR8	Lactococcus_phage	93.9	0.0e+00
WP_081172175.1|1701178_1702714_-|tail	phage tail protein	tail	Q9AZR9	Lactococcus_phage	98.2	7.1e-290
WP_081172177.1|1702716_1707846_-|tail	phage tail tape measure protein	tail	Q8LTK2	Lactococcus_phage	89.3	0.0e+00
WP_021214451.1|1708070_1708487_-	hypothetical protein	NA	Q8LTK3	Lactococcus_phage	99.3	4.6e-66
WP_010905928.1|1708631_1709225_-|tail	tail protein	tail	Q9AZS2	Lactococcus_phage	100.0	3.8e-106
WP_063280625.1|1709255_1709651_-	DUF806 family protein	NA	Q8LTK5	Lactococcus_phage	98.5	2.6e-66
WP_081172179.1|1709647_1710154_-	hypothetical protein	NA	Q9AZS4	Lactococcus_phage	96.4	1.5e-87
WP_002819792.1|1710155_1710506_-|head	phage head closure protein	head	Q8LTK7	Lactococcus_phage	99.1	7.3e-57
WP_010905932.1|1710480_1710804_-|head,tail	phage gp6-like head-tail connector protein	head,tail	Q9AZS6	Lactococcus_phage	100.0	6.3e-55
WP_010905933.1|1710819_1712046_-|capsid	phage major capsid protein	capsid	Q9AZS7	Lactococcus_phage	99.8	4.6e-223
WP_002819795.1|1712057_1712762_-|protease	Clp protease ClpP	protease	Q9AZS8	Lactococcus_phage	100.0	4.2e-120
WP_010905935.1|1712807_1713986_-|portal	phage portal protein	portal	Q77P35	Lactococcus_phage	100.0	3.1e-224
WP_010905936.1|1713982_1714192_-	DUF1056 family protein	NA	Q9AZT0	Lactococcus_phage	100.0	3.8e-29
WP_161940569.1|1714160_1716131_-|terminase	terminase large subunit	terminase	Q9AZT1	Lactococcus_phage	99.7	0.0e+00
WP_010905938.1|1716120_1716594_-|terminase	phage terminase small subunit P27 family	terminase	Q9AZT2	Lactococcus_phage	100.0	5.9e-86
WP_010905939.1|1716722_1717238_-	HNH endonuclease	NA	Q9AZT3	Lactococcus_phage	100.0	2.3e-99
WP_081172264.1|1717239_1717545_-	hypothetical protein	NA	Q9AZT4	Lactococcus_phage	100.0	1.1e-35
WP_011835815.1|1717724_1718126_-	RinA family protein	NA	Q9AZZ1	Lactococcus_phage	99.2	1.2e-68
WP_081172183.1|1718491_1718833_-	hypothetical protein	NA	M1NRW0	Streptococcus_phage	54.1	1.3e-26
WP_081172185.1|1718841_1719024_-	DUF1660 domain-containing protein	NA	A0A1P8BKU8	Lactococcus_phage	93.3	9.7e-29
WP_081172187.1|1719020_1719260_-	hypothetical protein	NA	A0A1W6JL28	Lactococcus_phage	71.8	2.9e-25
WP_082231506.1|1719278_1719605_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081172191.1|1719670_1720363_-	hypothetical protein	NA	A0A1P8BKX7	Lactococcus_phage	97.4	2.4e-128
WP_081172193.1|1720349_1720712_-	hypothetical protein	NA	Q9MBV6	Lactococcus_phage	98.3	3.6e-67
WP_014570542.1|1720704_1720866_-	hypothetical protein	NA	Q9MBW9	Lactococcus_phage	100.0	1.2e-25
WP_081172195.1|1720888_1721140_-	hypothetical protein	NA	A0A1P8BL80	Lactococcus_phage	53.5	2.8e-26
WP_081172266.1|1721136_1721433_-	hypothetical protein	NA	A0A1P8BKA8	Lactococcus_phage	91.4	2.2e-30
WP_081172197.1|1721494_1721914_-	dUTP diphosphatase	NA	Q9AZP1	Lactococcus_phage	97.8	7.4e-72
WP_081172199.1|1721910_1722573_-	DUF1642 domain-containing protein	NA	Q9AYU5	Lactococcus_phage	82.5	1.6e-76
WP_081172201.1|1722596_1722929_-	hypothetical protein	NA	Q9G0E0	Lactococcus_phage	91.2	1.5e-11
WP_081172203.1|1723251_1723662_-	hypothetical protein	NA	A5GZ50	Lactococcus_phage	98.5	1.1e-75
WP_014570811.1|1723674_1723917_-	hypothetical protein	NA	A5GZ49	Lactococcus_phage	100.0	7.8e-42
WP_081172205.1|1723909_1724842_-	DnaD domain protein	NA	A5GZ47	Lactococcus_phage	89.7	4.8e-132
WP_081172207.1|1725105_1726032_-	recombinase RecT	NA	A0A1P8BKY8	Lactococcus_phage	97.4	2.8e-156
WP_081172209.1|1726028_1726862_-	hypothetical protein	NA	A0A1P8BKZ1	Lactococcus_phage	94.9	2.3e-125
WP_081172211.1|1726963_1727206_-	hypothetical protein	NA	A0A1B1IMF7	Lactococcus_phage	92.5	1.6e-34
WP_003130605.1|1727337_1727520_-	hypothetical protein	NA	A5GZ68	Lactococcus_phage	100.0	2.4e-27
WP_081172213.1|1727535_1728225_-	phage regulatory protein	NA	A5GZ67	Lactococcus_phage	98.3	2.8e-121
WP_014570819.1|1728283_1728517_-	transcriptional regulator	NA	A5GZ66	Lactococcus_phage	100.0	5.0e-38
WP_023189013.1|1728693_1729101_+	helix-turn-helix transcriptional regulator	NA	A5GZ65	Lactococcus_phage	100.0	5.1e-70
WP_023349179.1|1729111_1729696_+	hypothetical protein	NA	A5GZ64	Lactococcus_phage	98.5	8.6e-111
WP_023189015.1|1729751_1730291_+	hypothetical protein	NA	A5GZ63	Lactococcus_phage	100.0	5.7e-93
WP_081172268.1|1730416_1731874_+	recombinase family protein	NA	A0A1B1IM01	Lactococcus_phage	99.2	2.0e-273
WP_010906052.1|1731978_1733052_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.3	1.5e-60
WP_003129382.1|1733114_1734047_-	aspartate carbamoyltransferase catalytic subunit	NA	M1HWF9	Paramecium_bursaria_Chlorella_virus	30.5	3.7e-23
WP_010906053.1|1734230_1735523_-	uracil-xanthine permease	NA	Q9KX94	Enterobacteria_phage	35.9	1.6e-61
>prophage 14
NZ_CP015896	Lactococcus lactis subsp. lactis strain 229 chromosome, complete genome	2468447	1858991	1868850	2468447	tRNA	Prochlorococcus_phage(33.33%)	9	NA	NA
WP_003130886.1|1858991_1859753_-	phosphate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.0	1.5e-17
WP_003130885.1|1859918_1860728_-	phosphate ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.5	7.0e-10
WP_003130884.1|1860761_1861655_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_081172219.1|1861654_1862578_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003130881.1|1862698_1863550_-	phosphate ABC transporter substrate-binding protein PstS family protein	NA	E3SNT9	Prochlorococcus_phage	27.3	4.2e-05
WP_003130880.1|1863896_1864793_-	phosphate ABC transporter substrate-binding protein	NA	E3SM63	Prochlorococcus_phage	32.4	7.2e-08
WP_003130878.1|1865070_1865538_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	56.6	2.7e-43
WP_003130877.1|1865569_1866136_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA	NA
WP_003130876.1|1866231_1868850_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	33.7	7.1e-64
>prophage 15
NZ_CP015896	Lactococcus lactis subsp. lactis strain 229 chromosome, complete genome	2468447	2099287	2116568	2468447	transposase,integrase	Lactococcus_phage(83.33%)	21	2099109:2099129	2113599:2113619
2099109:2099129	attL	ATATAATAGAATAGACAGTTT	NA	NA	NA	NA
WP_003130410.1|2099287_2100235_+|transposase	IS30 family transposase	transposase	H7BVY4	unidentified_phage	33.0	3.4e-32
WP_010906204.1|2101546_2102467_-	DUF4065 domain-containing protein	NA	Q9AZG0	Lactococcus_phage	99.7	1.6e-172
WP_010906205.1|2102478_2102775_-	hypothetical protein	NA	Q9AZG1	Lactococcus_phage	100.0	1.6e-49
WP_010906206.1|2102963_2103143_-	hypothetical protein	NA	Q9AZG2	Lactococcus_phage	100.0	9.2e-24
WP_010906207.1|2103334_2103565_-	hypothetical protein	NA	Q9AZG3	Lactococcus_phage	100.0	1.5e-39
WP_010906208.1|2103707_2104214_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	100.0	4.2e-90
WP_003130410.1|2104812_2105760_+|transposase	IS30 family transposase	transposase	H7BVY4	unidentified_phage	33.0	3.4e-32
WP_010906210.1|2105847_2106210_-	hypothetical protein	NA	Q9AZG6	Lactococcus_phage	100.0	3.4e-57
WP_010906211.1|2106226_2106799_-	hypothetical protein	NA	Q9AZG7	Lactococcus_phage	100.0	2.1e-98
WP_010906212.1|2106960_2107167_-	hypothetical protein	NA	Q9AZG9	Lactococcus_phage	100.0	1.6e-32
WP_010906213.1|2107185_2107368_-	hypothetical protein	NA	Q9AZH0	Lactococcus_phage	100.0	1.4e-27
WP_021214867.1|2107736_2109434_-	hypothetical protein	NA	Q9AZH2	Lactococcus_phage	100.0	7.2e-251
WP_010906216.1|2109444_2109714_-	hypothetical protein	NA	Q9AZH3	Lactococcus_phage	100.0	1.3e-40
WP_010906219.1|2110116_2110287_-	DUF1655 domain-containing protein	NA	Q9AZH6	Lactococcus_phage	100.0	4.6e-25
WP_010906221.1|2110525_2111041_-	Rha family transcriptional regulator	NA	Q9AZH8	Lactococcus_phage	100.0	4.2e-93
WP_010906222.1|2111155_2111362_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010906223.1|2111510_2112218_+	helix-turn-helix transcriptional regulator	NA	Q9AZH9	Lactococcus_phage	100.0	1.8e-123
WP_010906224.1|2112298_2113498_+|integrase	site-specific integrase	integrase	Q9AZI0	Lactococcus_phage	100.0	1.4e-224
WP_004254847.1|2113701_2114241_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
2113599:2113619	attR	ATATAATAGAATAGACAGTTT	NA	NA	NA	NA
WP_010906225.1|2114407_2115886_+	chitinase	NA	NA	NA	NA	NA
WP_010906226.1|2115905_2116568_+	chitin-binding protein	NA	A0A0K1Y848	Apis_mellifera_filamentous_virus	31.2	1.2e-15
>prophage 16
NZ_CP015896	Lactococcus lactis subsp. lactis strain 229 chromosome, complete genome	2468447	2272831	2339047	2468447	holin,terminase,transposase,portal,integrase,plate,protease,capsid,tRNA	Lactococcus_phage(84.31%)	71	2267963:2267981	2315563:2315581
2267963:2267981	attL	AAACAGATTTTCCATGTTT	NA	NA	NA	NA
WP_081172233.1|2272831_2273611_-|holin	phage holin	holin	Q38323	Lactococcus_phage	98.8	7.4e-126
WP_010905390.1|2273610_2273898_-|holin	phage holin	holin	Q9AZL0	Lactococcus_phage	100.0	5.6e-47
WP_023164617.1|2273922_2275485_-|plate	BppU family phage baseplate upper protein	plate	Q9AZR3	Lactococcus_phage	96.0	7.1e-245
WP_011676503.1|2275496_2275721_-|holin	holin	holin	A0A1B1IMU8	Lactococcus_phage	100.0	6.1e-33
WP_023164509.1|2275733_2275964_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023164618.1|2275975_2279008_-	hypothetical protein	NA	A0A1B1IMK1	Lactococcus_phage	57.8	4.9e-282
WP_023164619.1|2279007_2280531_-	hypothetical protein	NA	A0A1B1IM42	Lactococcus_phage	37.1	1.3e-81
WP_003331415.1|2281738_2282962_+|transposase	IS21-like element IS712 family transposase	transposase	A0A059NT83	Lactococcus_phage	100.0	4.9e-233
WP_003331414.1|2282973_2283732_+	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	100.0	5.3e-137
WP_023164622.1|2285307_2286015_-	hypothetical protein	NA	A5GYM7	Lactococcus_phage	99.1	6.9e-123
WP_003131323.1|2286030_2286438_-	hypothetical protein	NA	A0A1B1IMQ4	Lactococcus_phage	100.0	1.2e-66
WP_014570559.1|2286494_2286971_-	hypothetical protein	NA	A5GYM5	Lactococcus_phage	100.0	3.0e-85
WP_023164623.1|2286981_2287416_-	hypothetical protein	NA	A5GYM4	Lactococcus_phage	99.3	7.4e-75
WP_003131320.1|2287415_2287745_-	hypothetical protein	NA	A5GYM3	Lactococcus_phage	100.0	4.4e-56
WP_014570557.1|2287741_2288086_-	hypothetical protein	NA	A5GYM2	Lactococcus_phage	100.0	3.1e-60
WP_014570556.1|2288075_2288477_-	hypothetical protein	NA	A5GYM1	Lactococcus_phage	100.0	6.8e-59
WP_014570555.1|2288550_2288787_-	Ig domain-containing protein	NA	A5GYM0	Lactococcus_phage	100.0	4.2e-32
WP_023164624.1|2288815_2289733_-|capsid	phage capsid protein	capsid	A5GYL9	Lactococcus_phage	99.0	1.4e-163
WP_023164625.1|2289748_2290798_-	DNA methyltransferase	NA	A0A1B1IMM2	Lactococcus_phage	94.0	8.4e-157
WP_023164626.1|2290813_2291644_-|capsid	phage capsid protein	capsid	A0A1B1IM23	Lactococcus_phage	98.2	7.1e-151
WP_023164627.1|2291636_2293166_-|portal	phage portal protein	portal	A5GYL6	Lactococcus_phage	99.0	3.2e-290
WP_109009804.1|2293178_2294621_-|terminase	phage terminase large subunit	terminase	A5GYP8	Lactococcus_phage	99.0	1.5e-281
WP_023164629.1|2294610_2295420_-	HNH endonuclease	NA	A0A1X9I5J3	Streptococcus_phage	55.9	1.1e-79
WP_023164630.1|2295591_2295981_-	DUF722 domain-containing protein	NA	A5GYP6	Lactococcus_phage	97.7	6.0e-68
WP_023164631.1|2296344_2296566_-	hypothetical protein	NA	A0A1P8BL06	Lactococcus_phage	98.6	1.9e-34
WP_023164632.1|2296574_2296769_-	DUF1660 domain-containing protein	NA	Q9AZT9	Lactococcus_phage	96.9	2.8e-34
WP_023164633.1|2296765_2296975_-	hypothetical protein	NA	E0YIV8	Lactococcus_phage	98.6	4.4e-33
WP_023164634.1|2296975_2297191_-	hypothetical protein	NA	E0YIV7	Lactococcus_phage	93.0	1.1e-34
WP_023164635.1|2297237_2297432_-	hypothetical protein	NA	A0A1W6JL55	Lactococcus_phage	68.8	5.3e-17
WP_023164636.1|2297448_2298099_-	hypothetical protein	NA	A0A1P8BL14	Lactococcus_phage	98.6	5.4e-122
WP_043994700.1|2298085_2298415_-	hypothetical protein	NA	A0A1W6JKT3	Lactococcus_phage	64.7	3.3e-27
WP_109009806.1|2298732_2298912_-	hypothetical protein	NA	A0A0D3MT42	Lactococcus_phage	88.1	7.1e-24
WP_109009808.1|2298998_2299184_-	hypothetical protein	NA	A0A1P8BKA8	Lactococcus_phage	93.4	4.0e-22
WP_023164641.1|2299494_2300403_-	DnaD domain protein	NA	Q8LTN2	Lactococcus_phage	69.5	1.7e-41
WP_081172237.1|2300628_2301672_-	DUF1351 domain-containing protein	NA	A0A1P8BLT7	Lactococcus_phage	98.6	1.4e-167
WP_081172239.1|2301673_2302411_-	phage recombination protein Bet	NA	A0A1P8BLI0	Lactococcus_phage	99.2	8.8e-137
WP_081172241.1|2302400_2302745_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_081172243.1|2302741_2302978_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_081172245.1|2303076_2303325_-	hypothetical protein	NA	A0A059NT64	Lactococcus_phage	67.1	1.1e-19
WP_081172270.1|2303334_2303529_-	hypothetical protein	NA	A0A1P8BKZ2	Lactococcus_phage	98.4	2.5e-27
WP_003130869.1|2303903_2304242_-	hypothetical protein	NA	A0A1B1IMQ1	Lactococcus_phage	99.1	9.8e-59
WP_081172247.1|2304255_2304981_-	hypothetical protein	NA	A0A1P8BM06	Lactococcus_phage	99.6	4.0e-134
WP_058147755.1|2304997_2305231_-	helix-turn-helix transcriptional regulator	NA	A0A1B1IMQ9	Lactococcus_phage	98.7	5.6e-37
WP_153928069.1|2305315_2305483_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023189648.1|2305477_2305642_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081172249.1|2305748_2305982_-	hypothetical protein	NA	Q9AZQ6	Lactococcus_phage	94.8	6.1e-36
WP_081172251.1|2306013_2306187_-	putative transcriptional regulator	NA	Q9AZQ1	Lactococcus_phage	93.0	1.3e-22
WP_081172253.1|2306426_2307296_+	helix-turn-helix domain-containing protein	NA	Q38327	Lactococcus_phage	78.4	4.7e-121
WP_081172255.1|2307345_2308485_+|integrase	site-specific integrase	integrase	A0A1B1IMP1	Lactococcus_phage	97.9	9.2e-210
WP_010906319.1|2308635_2309709_-	type II secretion system F family protein	NA	NA	NA	NA	NA
WP_010906320.1|2309602_2310541_-	type II/IV secretion system protein	NA	NA	NA	NA	NA
WP_031296849.1|2310660_2315577_-	PolC-type DNA polymerase III	NA	A0A0K2SUJ2	Clostridium_phage	37.8	3.1e-20
WP_010906322.1|2315749_2316286_-	hypothetical protein	NA	NA	NA	NA	NA
2315563:2315581	attR	AAACAGATTTTCCATGTTT	NA	NA	NA	NA
WP_010906323.1|2316291_2317623_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010906324.1|2317638_2319489_-|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010906325.1|2319558_2320845_-|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_003130590.1|2320863_2321667_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010906326.1|2321666_2322401_-	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	37.0	5.9e-16
WP_003130588.1|2322772_2323105_-	preprotein translocase subunit YajC	NA	NA	NA	NA	NA
WP_003130585.1|2323915_2324395_-	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_003130410.1|2324433_2325381_-|transposase	IS30 family transposase	transposase	H7BVY4	unidentified_phage	33.0	3.4e-32
WP_010906329.1|2325850_2327077_+|protease	serine protease	protease	A0A1B1IRD3	uncultured_Mediterranean_phage	26.3	4.9e-07
WP_010906330.1|2327202_2328201_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010906331.1|2328326_2329667_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003130579.1|2329774_2329999_+	YkuJ family protein	NA	NA	NA	NA	NA
WP_010906332.1|2330140_2331145_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010906333.1|2331185_2331938_-|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	tRNA	NA	NA	NA	NA
WP_010906334.1|2332284_2334918_-	DNA polymerase I	NA	A0A068EMS7	Bacillus_phage	31.4	7.7e-50
WP_010906335.1|2335155_2335965_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_095586744.1|2336454_2337602_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	41.0	2.3e-46
WP_101928107.1|2337674_2339047_-|transposase	IS3-like element ISLla3 family transposase	transposase	A0A1B1P773	Bacillus_phage	43.8	2.4e-55
>prophage 1
NZ_CP016694	Lactococcus lactis subsp. lactis strain 229 plasmid p229A, complete sequence	56368	39786	49080	56368	transposase	Streptococcus_phage(37.5%)	11	NA	NA
WP_011915260.1|39786_40536_-	nicotinamide mononucleotide transporter	NA	A0A2K9VCL6	Lactobacillus_phage	45.6	3.6e-53
WP_058147821.1|40968_41649_+|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	83.6	6.5e-110
WP_031367148.1|41752_42091_-	Cd(II)/Zn(II)-sensing metalloregulatory transcriptional regulator CadX	NA	E4ZFI8	Streptococcus_phage	33.3	1.7e-10
WP_058147822.1|42102_42717_-	CadD family cadmium resistance transporter	NA	NA	NA	NA	NA
WP_081039420.1|42745_42970_+	FanG protein	NA	NA	NA	NA	NA
WP_058147823.1|43356_44316_-|transposase	IS30-like element IS6770 family transposase	transposase	W5R8L2	Staphylococcus_phage	36.4	7.9e-37
WP_003108064.1|44531_44954_+	cupin domain-containing protein	NA	Q2I8C5	Bacillus_phage	61.0	3.1e-38
WP_003132846.1|45493_46048_+	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	50.6	3.6e-42
WP_003132844.1|46397_46619_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003132842.1|46653_46950_-	hypothetical protein	NA	A0A1S5SEW3	Streptococcus_phage	39.3	4.2e-05
WP_014011541.1|47196_49080_-	endopeptidase PepO	NA	E3T4I7	Cafeteria_roenbergensis_virus	31.1	1.3e-72
