assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002075105.1_ASM207510v1	NZ_CP020457	Lactobacillus amylolyticus strain L6 chromosome, complete genome	1	417289-417517	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2	csa3,cas3,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,DEDDh,DinG,WYL,csn2,cas9,cas14j,c2c9_V-U4	Unclear	GAGTTTTTATCTAACTTAAGAGAAATGTAAATC,GTTTTTATCTAACTTAAGAGAAATGTAAAT,GTTTTTATCTAACTTAAGAGAAATGTAAATC	33,30,31	3	3	417322-417355|417320-417356|417321-417356	NZ_CP020457.1_469062-469029|NZ_CP020457.1_469063-469027|NZ_CP020457.1_469062-469027	NA:NA:NA	3,3,3	3	Unclear	csa3,cas3,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,DEDDh,DinG,WYL,csn2,cas9,cas14j,c2c9_V-U4	NA,NA	NA|407aa|up_9|NZ_CP020457.1_404392_405613_+	pfam05975, EcsB, Bacterial ABC transporter protein EcsB	NA|219aa|up_8|NZ_CP020457.1_405620_406277_+	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|107aa|up_7|NZ_CP020457.1_406330_406651_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|215aa|up_6|NZ_CP020457.1_406669_407314_+	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|438aa|up_5|NZ_CP020457.1_408663_409977_+	PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase; Provisional	NA|420aa|up_4|NZ_CP020457.1_411392_412652_+	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional	cas6|252aa|up_3|NZ_CP020457.1_412962_413718_+	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	cas8b2|585aa|up_2|NZ_CP020457.1_413735_415490_+	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|306aa|up_1|NZ_CP020457.1_415493_416411_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas5|238aa|up_0|NZ_CP020457.1_416397_417111_+	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas3|810aa|down_0|NZ_CP020457.1_417602_420032_+	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas4|164aa|down_1|NZ_CP020457.1_420047_420539_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas1|330aa|down_2|NZ_CP020457.1_420548_421538_+	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas2|94aa|down_3|NZ_CP020457.1_421543_421825_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|888aa|down_4|NZ_CP020457.1_424303_426967_+	PRK05755, PRK05755, DNA polymerase I; Provisional	NA|277aa|down_5|NZ_CP020457.1_426976_427807_+	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|201aa|down_6|NZ_CP020457.1_427803_428406_+	PRK00081, coaE, dephospho-CoA kinase; Reviewed	NA|157aa|down_7|NZ_CP020457.1_428408_428879_+	PRK00464, nrdR, transcriptional repressor NrdR	NA|448aa|down_8|NZ_CP020457.1_428878_430222_+	COG3611, DnaB, Replication initiation/membrane attachment protein [DNA replication, recombination, and repair]	NA|300aa|down_9|NZ_CP020457.1_430232_431132_+	PRK08939, PRK08939, primosomal protein DnaI; Reviewed
GCF_002075105.1_ASM207510v1	NZ_CP020457	Lactobacillus amylolyticus strain L6 chromosome, complete genome	2	422009-424212	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2	csa3,cas3,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,DEDDh,DinG,WYL,csn2,cas9,cas14j,c2c9_V-U4	Unclear	GTTTTTATTTAACTTAAGAGAAATGTAA,GTTTTTATTTAACTTAAGAGAAATGTAAAG,NGTTTTTATTTAACTTAAGAGAAATGTAAA	28,30,30	14	28	422234-422270|422364-422399|422105-422139|422170-422205|422236-422270|422301-422335|422301-422335|422301-422335|422301-422335|422301-422335|422301-422335|422301-422335|422301-422335|422366-422399|422430-422465|422496-422531|422627-422662|423225-423261|422235-422270|422300-422335|422300-422335|422300-422335|422300-422335|422300-422335|422300-422335|422300-422335|422300-422335|422365-422399	NZ_CP020457.1_799556-799592|NZ_CP020457.1_1249741-1249776|NZ_CP020457.1_1092100-1092066|NZ_CP020457.1_453149-453184|NZ_CP020457.1_799558-799592|NZ_CP020457.1_229648-229682|NZ_CP020457.1_439015-439049|NZ_CP020457.1_1131800-1131766|NZ_CP020457.1_1232943-1232909|NZ_CP020458.1_141172-141138|NZ_CP020458.1_152597-152563|NZ_CP020458.1_164018-163984|NZ_CP020458.1_175437-175403|NZ_CP020457.1_1249743-1249776|NZ_CP020457.1_59032-58997|NZ_CP020457.1_722708-722743|NZ_CP020457.1_1364851-1364816|NZ_CP020457.1_715269-715233|NZ_CP020457.1_799557-799592|NZ_CP020458.1_141173-141138|NZ_CP020458.1_152598-152563|NZ_CP020458.1_164019-163984|NZ_CP020458.1_175438-175403|NZ_CP020457.1_1131801-1131766|NZ_CP020457.1_1232944-1232909|NZ_CP020457.1_229647-229682|NZ_CP020457.1_439014-439049|NZ_CP020457.1_1249742-1249776	NA:NA:NA	30,32,33	33	Unclear	csa3,cas3,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,DEDDh,DinG,WYL,csn2,cas9,cas14j,c2c9_V-U4	NA,NA	NA|438aa|up_9|NZ_CP020457.1_408663_409977_+	PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase; Provisional	NA|420aa|up_8|NZ_CP020457.1_411392_412652_+	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional	cas6|252aa|up_7|NZ_CP020457.1_412962_413718_+	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	cas8b2|585aa|up_6|NZ_CP020457.1_413735_415490_+	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|306aa|up_5|NZ_CP020457.1_415493_416411_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas5|238aa|up_4|NZ_CP020457.1_416397_417111_+	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas3|810aa|up_3|NZ_CP020457.1_417602_420032_+	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas4|164aa|up_2|NZ_CP020457.1_420047_420539_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas1|330aa|up_1|NZ_CP020457.1_420548_421538_+	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas2|94aa|up_0|NZ_CP020457.1_421543_421825_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|888aa|down_0|NZ_CP020457.1_424303_426967_+	PRK05755, PRK05755, DNA polymerase I; Provisional	NA|277aa|down_1|NZ_CP020457.1_426976_427807_+	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|201aa|down_2|NZ_CP020457.1_427803_428406_+	PRK00081, coaE, dephospho-CoA kinase; Reviewed	NA|157aa|down_3|NZ_CP020457.1_428408_428879_+	PRK00464, nrdR, transcriptional repressor NrdR	NA|448aa|down_4|NZ_CP020457.1_428878_430222_+	COG3611, DnaB, Replication initiation/membrane attachment protein [DNA replication, recombination, and repair]	NA|300aa|down_5|NZ_CP020457.1_430232_431132_+	PRK08939, PRK08939, primosomal protein DnaI; Reviewed	NA|645aa|down_6|NZ_CP020457.1_431412_433347_+	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed	NA|124aa|down_7|NZ_CP020457.1_433438_433810_+	COG3603, COG3603, Uncharacterized conserved protein [Function unknown]	NA|417aa|down_8|NZ_CP020457.1_433816_435067_+	pfam04087, DUF389, Domain of unknown function (DUF389)	NA|256aa|down_9|NZ_CP020457.1_436018_436786_+	pfam13612, DDE_Tnp_1_3, Transposase DDE domain
GCF_002075105.1_ASM207510v1	NZ_CP020457	Lactobacillus amylolyticus strain L6 chromosome, complete genome	3	1168421-1168485	3	CRISPRCasFinder	no	DEDDh	csa3,cas3,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,DEDDh,DinG,WYL,csn2,cas9,cas14j,c2c9_V-U4	Unclear	CCTGAGTTAAGACGGCTTGCACC	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,DEDDh,DinG,WYL,csn2,cas9,cas14j,c2c9_V-U4	NA,NA	NA|342aa|up_9|NZ_CP020457.1_1148391_1149417_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|348aa|up_8|NZ_CP020457.1_1149417_1150461_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|391aa|up_7|NZ_CP020457.1_1150453_1151626_-	cd03817, GT4_UGDG-like, UDP-Glc:1,2-diacylglycerol 3-a-glucosyltransferase and similar proteins	NA|147aa|up_6|NZ_CP020457.1_1152893_1153334_-	pfam06912, DUF1275, Protein of unknown function (DUF1275)	NA|436aa|up_5|NZ_CP020457.1_1160286_1161594_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|183aa|up_4|NZ_CP020457.1_1161813_1162362_-	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|209aa|up_3|NZ_CP020457.1_1162361_1162988_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|265aa|up_2|NZ_CP020457.1_1163127_1163922_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|461aa|up_1|NZ_CP020457.1_1164719_1166102_+	cd07100, ALDH_SSADH1_GabD1, Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 1-like	NA|350aa|up_0|NZ_CP020457.1_1166154_1167204_-	pfam13248, zf-ribbon_3, zinc-ribbon domain	NA|187aa|down_0|NZ_CP020457.1_1170983_1171544_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|315aa|down_1|NZ_CP020457.1_1171678_1172623_-	pfam13354, Beta-lactamase2, Beta-lactamase enzyme family	NA|306aa|down_2|NZ_CP020457.1_1172637_1173555_-	cd12827, EcCorA_ZntB-like_u2, uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family	NA|432aa|down_3|NZ_CP020457.1_1173674_1174970_-	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|434aa|down_4|NZ_CP020457.1_1175022_1176324_-	cd07732, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|275aa|down_5|NZ_CP020457.1_1176307_1177132_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|289aa|down_6|NZ_CP020457.1_1177135_1178002_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|362aa|down_7|NZ_CP020457.1_1178001_1179087_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|476aa|down_8|NZ_CP020457.1_1179420_1180848_-	pfam03577, Peptidase_C69, Peptidase family C69	NA|286aa|down_9|NZ_CP020457.1_1180893_1181751_-	pfam13930, Endonuclea_NS_2, DNA/RNA non-specific endonuclease
GCF_002075105.1_ASM207510v1	NZ_CP020457	Lactobacillus amylolyticus strain L6 chromosome, complete genome	4	1204677-1206099	4,3,3	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	csa3,cas3,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,DEDDh,DinG,WYL,csn2,cas9,cas14j,c2c9_V-U4	Type II-C,Type II-B,Type II-A	GATCTAAACCTTATTGATCTAACAATCATCTAAAAC,GATCTAAACCTTATTGATCTAACAATCATCTAAAAC,GATCTAAACCTTATTGATCTAACAATCATCTAAAAC	36,36,36	0	0	NA	NA	NA:NA:NA	21,21,14	21	TypeII-C,TypeII-B,TypeII-A	csa3,cas3,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,DEDDh,DinG,WYL,csn2,cas9,cas14j,c2c9_V-U4	NA|208aa|up_1|NZ_CP020457.1_1202726_1203350_-,NA	NA|150aa|up_9|NZ_CP020457.1_1194529_1194979_-	COG2153, ElaA, Predicted acyltransferase [General function prediction only]	NA|83aa|up_8|NZ_CP020457.1_1194980_1195229_-	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily	NA|766aa|up_7|NZ_CP020457.1_1195861_1198159_-	COG3973, COG3973, Superfamily I DNA and RNA helicases [General function prediction only]	NA|232aa|up_6|NZ_CP020457.1_1198313_1199009_+	cd04268, ZnMc_MMP_like, Zinc-dependent metalloprotease, MMP_like subfamily	NA|217aa|up_5|NZ_CP020457.1_1199078_1199729_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|218aa|up_4|NZ_CP020457.1_1199773_1200427_-	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|203aa|up_3|NZ_CP020457.1_1200662_1201271_+	PRK11448, hsdR, type I restriction enzyme EcoKI subunit R; Provisional	NA|422aa|up_2|NZ_CP020457.1_1201296_1202562_-	COG4640, COG4640, Predicted membrane protein [Function unknown]	NA|208aa|up_1|NZ_CP020457.1_1202726_1203350_-	NA	NA|294aa|up_0|NZ_CP020457.1_1203513_1204395_-	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	csn2|223aa|down_0|NZ_CP020457.1_1206131_1206800_-	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|102aa|down_1|NZ_CP020457.1_1206796_1207102_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|303aa|down_2|NZ_CP020457.1_1207079_1207988_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1388aa|down_3|NZ_CP020457.1_1208196_1212360_-	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	NA|408aa|down_4|NZ_CP020457.1_1212491_1213715_-	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|388aa|down_5|NZ_CP020457.1_1213791_1214955_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|66aa|down_6|NZ_CP020457.1_1215015_1215213_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|329aa|down_7|NZ_CP020457.1_1215401_1216388_-	pfam04321, RmlD_sub_bind, RmlD substrate binding domain	NA|203aa|down_8|NZ_CP020457.1_1216404_1217013_-	pfam00908, dTDP_sugar_isom, dTDP-4-dehydrorhamnose 3,5-epimerase	NA|295aa|down_9|NZ_CP020457.1_1217038_1217923_-	TIGR01207, Glucose-1-phosphate_thymidylyltransferase_1, glucose-1-phosphate thymidylyltransferase, short form
GCF_002075105.1_ASM207510v1	NZ_CP020458	Lactobacillus amylolyticus strain L6 plasmid pL6-1, complete sequence	1	196294-196494	1	PILER-CR	no		cas2	Orphan	TTTTAATAAGAGTGACATTGTATGGAGAATA	31	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,DEDDh,DinG,WYL,csn2,cas9,cas14j,c2c9_V-U4	NA,NA	NA|155aa|up_9|NZ_CP020458.1_179745_180210_+	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional	NA|101aa|up_8|NZ_CP020458.1_180895_181198_-	pfam02913, FAD-oxidase_C, FAD linked oxidases, C-terminal domain	NA|1091aa|up_7|NZ_CP020458.1_183333_186606_-	cd18012, DEXQc_arch_SWI2_SNF2, DEAQ-box helicase domain of archaeal and bacterial SNF2-related proteins	NA|185aa|up_6|NZ_CP020458.1_186826_187381_+	PRK13661, PRK13661, ECF-type riboflavin transporter substrate-binding protein	NA|570aa|up_5|NZ_CP020458.1_187395_189105_+	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|277aa|up_4|NZ_CP020458.1_189097_189928_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|657aa|up_3|NZ_CP020458.1_190936_192907_-	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|379aa|up_2|NZ_CP020458.1_193119_194256_-	pfam17668, Acetyltransf_17, Acetyltransferase (GNAT) domain	NA|266aa|up_1|NZ_CP020458.1_194617_195415_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|97aa|up_0|NZ_CP020458.1_195716_196007_+	cd17808, HipA_Ec_like, type II toxin-antitoxin sytem toxin HipA from Escherichia coli and similar proteins	NA|423aa|down_0|NZ_CP020458.1_197114_198383_+	pfam01051, Rep_3, Initiator Replication protein	NA|291aa|down_1|NZ_CP020458.1_198955_199828_-	COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]	NA|212aa|down_2|NZ_CP020458.1_199988_200624_+	cd04268, ZnMc_MMP_like, Zinc-dependent metalloprotease, MMP_like subfamily	NA|270aa|down_3|NZ_CP020458.1_200760_201570_-	COG4974, XerD, Site-specific recombinase XerD [DNA replication, recombination, and repair]	NA|292aa|down_4|NZ_CP020458.1_201638_202514_+	pfam06028, DUF915, Alpha/beta hydrolase of unknown function (DUF915)	NA|301aa|down_5|NZ_CP020458.1_202622_203525_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|299aa|down_6|NZ_CP020458.1_204506_205403_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|148aa|down_7|NZ_CP020458.1_205775_206219_+	cd06587, VOC, vicinal oxygen chelate (VOC) family	NA|646aa|down_8|NZ_CP020458.1_206264_208202_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|217aa|down_9|NZ_CP020458.1_208299_208950_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
