assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002073495.2_ASM207349v2	NZ_CP020414	Leptospira interrogans serovar Copenhageni strain FDAARGOS_203 chromosome, complete genome	1	21372-21462	1	CRISPRCasFinder	no		DinG,csa3,cas5,cas8c,cas7,cas4,cas1,cas2,Cas9_archaeal,cas3,WYL,cas8b3,cas6	Orphan	TAGGAAGTGATGCATTGAGTTCA	23	0	0	NA	NA	NA	1	1	Orphan	DinG,csa3,cas5,cas8c,cas7,cas4,cas1,cas2,Cas9_archaeal,cas3,WYL,cas8b3,cas6	NA|89aa|up_3|NZ_CP020414.2_15696_15963_+,NA|100aa|down_0|NZ_CP020414.2_21539_21839_-,NA|92aa|down_5|NZ_CP020414.2_27198_27474_-,NA|244aa|down_7|NZ_CP020414.2_28452_29184_-,NA|209aa|down_8|NZ_CP020414.2_29214_29841_-	NA|338aa|up_9|NZ_CP020414.2_9641_10655_-	PRK13186, lpxC, UDP-3-O-acyl-N-acetylglucosamine deacetylase	NA|223aa|up_8|NZ_CP020414.2_10990_11659_-	cd05325, carb_red_sniffer_like_SDR_c, carbonyl reductase sniffer-like, classical (c) SDRs	NA|222aa|up_7|NZ_CP020414.2_11741_12407_+	pfam01987, AIM24, Mitochondrial biogenesis AIM24	NA|225aa|up_6|NZ_CP020414.2_12422_13097_+	pfam01987, AIM24, Mitochondrial biogenesis AIM24	NA|227aa|up_5|NZ_CP020414.2_13109_13790_+	pfam01987, AIM24, Mitochondrial biogenesis AIM24	NA|366aa|up_4|NZ_CP020414.2_14115_15213_-	COG4335, COG4335, DNA alkylation repair enzyme [DNA replication, recombination, and repair]	NA|89aa|up_3|NZ_CP020414.2_15696_15963_+	NA	NA|437aa|up_2|NZ_CP020414.2_16082_17393_-	TIGR04043, hypothetical_protein_WH5701_02349, radical SAM protein, MSMEG_0568 family	NA|445aa|up_1|NZ_CP020414.2_17633_18968_+	pfam07995, GSDH, Glucose / Sorbosone dehydrogenase	NA|389aa|up_0|NZ_CP020414.2_19067_20234_+	NF033165, lipo_LipL45, lipoprotein LipL45	NA|100aa|down_0|NZ_CP020414.2_21539_21839_-	NA	NA|302aa|down_1|NZ_CP020414.2_21826_22732_-	PRK05481, PRK05481, lipoyl synthase; Provisional	NA|247aa|down_2|NZ_CP020414.2_22831_23572_+	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|473aa|down_3|NZ_CP020414.2_23568_24987_+	COG1696, DltB, Predicted membrane protein involved in D-alanine export [Cell envelope biogenesis, outer membrane]	NA|349aa|down_4|NZ_CP020414.2_25000_26047_+	pfam07611, DUF1574, Protein of unknown function (DUF1574)	NA|92aa|down_5|NZ_CP020414.2_27198_27474_-	NA	NA|215aa|down_6|NZ_CP020414.2_27628_28273_-	PRK01362, PRK01362, fructose-6-phosphate aldolase	NA|244aa|down_7|NZ_CP020414.2_28452_29184_-	NA	NA|209aa|down_8|NZ_CP020414.2_29214_29841_-	NA	NA|512aa|down_9|NZ_CP020414.2_29843_31379_-	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
GCF_002073495.2_ASM207349v2	NZ_CP020414	Leptospira interrogans serovar Copenhageni strain FDAARGOS_203 chromosome, complete genome	2	807437-807528	2	CRISPRCasFinder	no		DinG,csa3,cas5,cas8c,cas7,cas4,cas1,cas2,Cas9_archaeal,cas3,WYL,cas8b3,cas6	Orphan	ATTACGTCTCTTTGTAACTCACACTTGTT	29	0	0	NA	NA	NA	1	1	Orphan	DinG,csa3,cas5,cas8c,cas7,cas4,cas1,cas2,Cas9_archaeal,cas3,WYL,cas8b3,cas6	NA|175aa|up_9|NZ_CP020414.2_795944_796469_+,NA|176aa|up_1|NZ_CP020414.2_805830_806358_+,NA|185aa|down_5|NZ_CP020414.2_818182_818737_+	NA|175aa|up_9|NZ_CP020414.2_795944_796469_+	NA	NA|222aa|up_8|NZ_CP020414.2_796465_797131_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|299aa|up_7|NZ_CP020414.2_797127_798024_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|117aa|up_6|NZ_CP020414.2_798020_798371_+	cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides	NA|337aa|up_5|NZ_CP020414.2_798387_799398_+	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|438aa|up_4|NZ_CP020414.2_801156_802470_+	pfam07588, DUF1554, Protein of unknown function (DUF1554)	NA|137aa|up_3|NZ_CP020414.2_802769_803180_+	cd17569, REC_HupR-like, phosphoacceptor receiver (REC) domain of hydrogen uptake protein regulator (HupR) and similar domains	NA|430aa|up_2|NZ_CP020414.2_804530_805820_+	cd00828, elong_cond_enzymes, "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases	NA|176aa|up_1|NZ_CP020414.2_805830_806358_+	NA	NA|270aa|up_0|NZ_CP020414.2_806332_807142_-	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms]	NA|253aa|down_0|NZ_CP020414.2_807586_808345_-	PRK06172, PRK06172, SDR family oxidoreductase	NA|285aa|down_1|NZ_CP020414.2_808711_809566_-	pfam13279, 4HBT_2, Thioesterase-like superfamily	NA|594aa|down_2|NZ_CP020414.2_809994_811776_+	pfam01144, CoA_trans, Coenzyme A transferase	NA|323aa|down_3|NZ_CP020414.2_811809_812778_+	cd00830, KAS_III, Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems	NA|1781aa|down_4|NZ_CP020414.2_812802_818145_+	COG3899, COG3899, Predicted ATPase [General function prediction only]	NA|185aa|down_5|NZ_CP020414.2_818182_818737_+	NA	NA|124aa|down_6|NZ_CP020414.2_818739_819111_+	pfam09345, DUF1987, Domain of unknown function (DUF1987)	NA|487aa|down_7|NZ_CP020414.2_819139_820600_+	cd07302, CHD, cyclase homology domain	NA|153aa|down_8|NZ_CP020414.2_821469_821928_-	pfam13669, Glyoxalase_4, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|383aa|down_9|NZ_CP020414.2_822316_823464_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed
GCF_002073495.2_ASM207349v2	NZ_CP020414	Leptospira interrogans serovar Copenhageni strain FDAARGOS_203 chromosome, complete genome	3	1096329-1096431	3	CRISPRCasFinder	no		DinG,csa3,cas5,cas8c,cas7,cas4,cas1,cas2,Cas9_archaeal,cas3,WYL,cas8b3,cas6	Orphan	TTTTTTAATTTCATATCAAAATCTTGATCGTTTTAAGAG	39	0	0	NA	NA	NA	1	1	Orphan	DinG,csa3,cas5,cas8c,cas7,cas4,cas1,cas2,Cas9_archaeal,cas3,WYL,cas8b3,cas6	NA,NA|81aa|down_1|NZ_CP020414.2_1097682_1097925_+,NA|69aa|down_3|NZ_CP020414.2_1098796_1099003_-	NA|313aa|up_9|NZ_CP020414.2_1085347_1086286_-	PRK13022, secF, protein translocase subunit SecF	NA|643aa|up_8|NZ_CP020414.2_1086290_1088219_-	PRK05812, secD, preprotein translocase subunit SecD; Reviewed	NA|249aa|up_7|NZ_CP020414.2_1088229_1088976_-	TIGR04420, Sec_Non_Glob, Sec region non-globular protein	NA|109aa|up_6|NZ_CP020414.2_1088972_1089299_-	pfam02699, YajC, Preprotein translocase subunit	NA|337aa|up_5|NZ_CP020414.2_1089354_1090365_-	PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional	NA|249aa|up_4|NZ_CP020414.2_1090339_1091086_-	TIGR00560, pgsA, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA|438aa|up_3|NZ_CP020414.2_1091082_1092396_-	TIGR01125, Ribosomal_protein_S12_methylthiotransferase_RimO, ribosomal protein S12 methylthiotransferase RimO	NA|372aa|up_2|NZ_CP020414.2_1092404_1093520_-	pfam13413, HTH_25, Helix-turn-helix domain	NA|258aa|up_1|NZ_CP020414.2_1093541_1094315_-	cd16325, LolA, LolA, a periplasmic chaperone	NA|390aa|up_0|NZ_CP020414.2_1094773_1095943_-	pfam07614, DUF1577, Protein of unknown function (DUF1577)	NA|144aa|down_0|NZ_CP020414.2_1097151_1097583_-	pfam13671, AAA_33, AAA domain	NA|81aa|down_1|NZ_CP020414.2_1097682_1097925_+	NA	NA|222aa|down_2|NZ_CP020414.2_1098103_1098769_+	PRK00312, pcm, protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA|69aa|down_3|NZ_CP020414.2_1098796_1099003_-	NA	NA|567aa|down_4|NZ_CP020414.2_1098938_1100639_+	cd00567, ACAD, Acyl-CoA dehydrogenase	NA|240aa|down_5|NZ_CP020414.2_1100779_1101499_+	cd06561, AlkD_like, A new structural DNA glycosylase	NA|301aa|down_6|NZ_CP020414.2_1101476_1102379_+	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B	NA|340aa|down_7|NZ_CP020414.2_1103705_1104725_-	cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains	NA|345aa|down_8|NZ_CP020414.2_1104811_1105846_+	pfam03280, Lipase_chap, Proteobacterial lipase chaperone protein	NA|577aa|down_9|NZ_CP020414.2_1105852_1107583_+	PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed
GCF_002073495.2_ASM207349v2	NZ_CP020414	Leptospira interrogans serovar Copenhageni strain FDAARGOS_203 chromosome, complete genome	4	1400679-1400780	4	CRISPRCasFinder	no		DinG,csa3,cas5,cas8c,cas7,cas4,cas1,cas2,Cas9_archaeal,cas3,WYL,cas8b3,cas6	Orphan	CTGACAAATTCTAAGTTGTAAGAGTTCCCACA	32	0	0	NA	NA	NA	1	1	Orphan	DinG,csa3,cas5,cas8c,cas7,cas4,cas1,cas2,Cas9_archaeal,cas3,WYL,cas8b3,cas6	NA,NA|172aa|down_7|NZ_CP020414.2_1411268_1411784_-	NA|357aa|up_9|NZ_CP020414.2_1389066_1390137_-	PRK12299, obgE, GTPase CgtA; Reviewed	NA|85aa|up_8|NZ_CP020414.2_1390251_1390506_-	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|109aa|up_7|NZ_CP020414.2_1390495_1390822_-	PRK14553, PRK14553, ribosomal-processing cysteine protease Prp	NA|105aa|up_6|NZ_CP020414.2_1390818_1391133_-	PRK05573, rplU, 50S ribosomal protein L21; Validated	NA|287aa|up_5|NZ_CP020414.2_1393567_1394428_-	COG3865, COG3865, Uncharacterized protein conserved in bacteria [Function unknown]	NA|305aa|up_4|NZ_CP020414.2_1394492_1395407_-	pfam09674, DUF2400, Protein of unknown function (DUF2400)	NA|299aa|up_3|NZ_CP020414.2_1395403_1396300_-	cd07938, DRE_TIM_HMGL, 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain	NA|579aa|up_2|NZ_CP020414.2_1397319_1399056_-	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]	NA|95aa|up_1|NZ_CP020414.2_1399070_1399355_-	TIGR04453, Lepto_8Cys, Cys-rich protein, LA_1312 family	NA|354aa|up_0|NZ_CP020414.2_1399385_1400447_-	PRK14465, PRK14465, 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA|253aa|down_0|NZ_CP020414.2_1401537_1402296_-	PRK13957, PRK13957, indole-3-glycerol-phosphate synthase; Provisional	NA|111aa|down_1|NZ_CP020414.2_1402302_1402635_-	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|464aa|down_2|NZ_CP020414.2_1402717_1404109_+	COG0771, MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]	NA|82aa|down_3|NZ_CP020414.2_1405680_1405926_+	pfam07599, DUF1563, Protein of unknown function (DUF1563)	NA|632aa|down_4|NZ_CP020414.2_1406111_1408007_+	pfam07598, DUF1561, Protein of unknown function (DUF1561)	NA|258aa|down_5|NZ_CP020414.2_1408635_1409409_-	PRK13318, PRK13318, type III pantothenate kinase	NA|253aa|down_6|NZ_CP020414.2_1409410_1410169_-	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]	NA|172aa|down_7|NZ_CP020414.2_1411268_1411784_-	NA	NA|442aa|down_8|NZ_CP020414.2_1411879_1413205_-	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine	NA|287aa|down_9|NZ_CP020414.2_1413241_1414102_-	cd00586, 4HBT, 4-hydroxybenzoyl-CoA thioesterase (4HBT)
GCF_002073495.2_ASM207349v2	NZ_CP020414	Leptospira interrogans serovar Copenhageni strain FDAARGOS_203 chromosome, complete genome	5	2004306-2004401	5	CRISPRCasFinder	no		DinG,csa3,cas5,cas8c,cas7,cas4,cas1,cas2,Cas9_archaeal,cas3,WYL,cas8b3,cas6	Orphan	AGGAAAGCGTTGTGTTGAGTTTTCC	25	1	2	2004331-2004376|2004331-2004376	NZ_CP020414.2_1365940-1365985|NZ_CP020414.2_3440826-3440781	NA	1	1	Orphan	DinG,csa3,cas5,cas8c,cas7,cas4,cas1,cas2,Cas9_archaeal,cas3,WYL,cas8b3,cas6	NA|192aa|up_8|NZ_CP020414.2_1993667_1994243_-,NA|140aa|up_7|NZ_CP020414.2_1994531_1994951_+,NA|372aa|up_6|NZ_CP020414.2_1994982_1996098_+,NA|124aa|up_0|NZ_CP020414.2_2003708_2004080_+,NA|163aa|down_0|NZ_CP020414.2_2005287_2005776_-,NA|112aa|down_1|NZ_CP020414.2_2005785_2006121_-,NA|48aa|down_8|NZ_CP020414.2_2011884_2012028_+	NA|399aa|up_9|NZ_CP020414.2_1992402_1993599_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|192aa|up_8|NZ_CP020414.2_1993667_1994243_-	NA	NA|140aa|up_7|NZ_CP020414.2_1994531_1994951_+	NA	NA|372aa|up_6|NZ_CP020414.2_1994982_1996098_+	NA	NA|465aa|up_5|NZ_CP020414.2_1996539_1997934_-	pfam07588, DUF1554, Protein of unknown function (DUF1554)	NA|163aa|up_4|NZ_CP020414.2_1999040_1999529_-	pfam15428, Imm26, Immunity protein 26	NA|610aa|up_3|NZ_CP020414.2_1999677_2001507_-	PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed	NA|433aa|up_2|NZ_CP020414.2_2001715_2003014_+	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated	NA|219aa|up_1|NZ_CP020414.2_2003010_2003667_+	cd16373, DMSOR_beta_like, uncharacterized subfamily of DMSO Reductase beta subunit family	NA|124aa|up_0|NZ_CP020414.2_2003708_2004080_+	NA	NA|163aa|down_0|NZ_CP020414.2_2005287_2005776_-	NA	NA|112aa|down_1|NZ_CP020414.2_2005785_2006121_-	NA	NA|184aa|down_2|NZ_CP020414.2_2006587_2007139_-	pfam03168, LEA_2, Late embryogenesis abundant protein	NA|341aa|down_3|NZ_CP020414.2_2007143_2008166_-	cd08291, ETR_like_1, 2-enoyl thioester reductase (ETR) like proteins, child 1	NA|109aa|down_4|NZ_CP020414.2_2008162_2008489_-	cd02980, TRX_Fd_family, Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE)	NA|165aa|down_5|NZ_CP020414.2_2008882_2009377_+	pfam11827, DUF3347, Protein of unknown function (DUF3347)	NA|330aa|down_6|NZ_CP020414.2_2009355_2010345_+	pfam11916, Vac14_Fig4_bd, Vacuolar protein 14 C-terminal Fig4p binding	NA|261aa|down_7|NZ_CP020414.2_2010353_2011136_-	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only]	NA|48aa|down_8|NZ_CP020414.2_2011884_2012028_+	NA	NA|491aa|down_9|NZ_CP020414.2_2012188_2013661_-	PRK09123, PRK09123, amidophosphoribosyltransferase; Provisional
GCF_002073495.2_ASM207349v2	NZ_CP020414	Leptospira interrogans serovar Copenhageni strain FDAARGOS_203 chromosome, complete genome	6	2732497-2732589	6	CRISPRCasFinder	no		DinG,csa3,cas5,cas8c,cas7,cas4,cas1,cas2,Cas9_archaeal,cas3,WYL,cas8b3,cas6	Orphan	AACGCTCTTTATGAATCGCGTTG	23	0	0	NA	NA	NA	1	1	Orphan	DinG,csa3,cas5,cas8c,cas7,cas4,cas1,cas2,Cas9_archaeal,cas3,WYL,cas8b3,cas6	NA|169aa|up_8|NZ_CP020414.2_2719171_2719678_+,NA|71aa|up_4|NZ_CP020414.2_2725619_2725832_+,NA|673aa|up_3|NZ_CP020414.2_2725998_2728017_+,NA|57aa|down_1|NZ_CP020414.2_2734738_2734909_+,NA|65aa|down_5|NZ_CP020414.2_2740272_2740467_-,NA|97aa|down_8|NZ_CP020414.2_2744051_2744342_+	NA|116aa|up_9|NZ_CP020414.2_2718821_2719169_+	TIGR03433, padR_acidobact, transcriptional regulator, Acidobacterial, PadR-family	NA|169aa|up_8|NZ_CP020414.2_2719171_2719678_+	NA	NA|182aa|up_7|NZ_CP020414.2_2719685_2720231_+	pfam06445, GyrI-like, GyrI-like small molecule binding domain	NA|566aa|up_6|NZ_CP020414.2_2721669_2723367_-	cd01154, AidB, Proteins involved in DNA damage response, similar to the AidB gene product	NA|553aa|up_5|NZ_CP020414.2_2723962_2725621_-	cd16010, iPGM, 2 3 bisphosphoglycerate independent phosphoglycerate mutase iPGM	NA|71aa|up_4|NZ_CP020414.2_2725619_2725832_+	NA	NA|673aa|up_3|NZ_CP020414.2_2725998_2728017_+	NA	NA|281aa|up_2|NZ_CP020414.2_2728682_2729525_-	cd01716, Hfq, bacterial Hfq-like	NA|183aa|up_1|NZ_CP020414.2_2729628_2730177_+	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|350aa|up_0|NZ_CP020414.2_2730336_2731386_+	pfam04773, FecR, FecR protein	NA|150aa|down_0|NZ_CP020414.2_2732969_2733419_-	pfam07681, DoxX, DoxX	NA|57aa|down_1|NZ_CP020414.2_2734738_2734909_+	NA	NA|632aa|down_2|NZ_CP020414.2_2735025_2736921_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|112aa|down_3|NZ_CP020414.2_2737424_2737760_+	PRK07411, PRK07411, molybdopterin-synthase adenylyltransferase MoeB	NA|273aa|down_4|NZ_CP020414.2_2738262_2739081_+	cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain	NA|65aa|down_5|NZ_CP020414.2_2740272_2740467_-	NA	NA|204aa|down_6|NZ_CP020414.2_2741278_2741890_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|394aa|down_7|NZ_CP020414.2_2742759_2743941_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|97aa|down_8|NZ_CP020414.2_2744051_2744342_+	NA	NA|444aa|down_9|NZ_CP020414.2_2744582_2745914_-	pfam01510, Amidase_2, N-acetylmuramoyl-L-alanine amidase
GCF_002073495.2_ASM207349v2	NZ_CP020414	Leptospira interrogans serovar Copenhageni strain FDAARGOS_203 chromosome, complete genome	7	3423774-3424028	7,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas5,cas7,cas8b3,cas3,cas6,cas2	DinG,csa3,cas5,cas8c,cas7,cas4,cas1,cas2,Cas9_archaeal,cas3,WYL,cas8b3,cas6	Unclear	GTGCTCAACGCCTAACGGCATCAAAGTTATATTCAG,GTGCTCAACGCCTAACGGCATCAAAGTTATATTCAGA,TCCGTGCTCAACGCCTAACGGCATCAAAGTTATATTCAG	36,37,39	0	0	NA	NA	I-A,I-B,II-B:I-A,I-B,II-B:I-A,I-B,II-B	3,3,2	3	Unclear	DinG,csa3,cas5,cas8c,cas7,cas4,cas1,cas2,Cas9_archaeal,cas3,WYL,cas8b3,cas6	NA|61aa|up_6|NZ_CP020414.2_3415216_3415399_+,NA|87aa|up_5|NZ_CP020414.2_3416292_3416553_+,NA|69aa|down_0|NZ_CP020414.2_3424069_3424276_+,NA|71aa|down_4|NZ_CP020414.2_3428669_3428882_+,NA|129aa|down_5|NZ_CP020414.2_3429065_3429452_-,NA|184aa|down_6|NZ_CP020414.2_3429794_3430346_-	NA|384aa|up_9|NZ_CP020414.2_3411174_3412326_-	pfam13166, AAA_13, AAA domain	NA|394aa|up_8|NZ_CP020414.2_3412322_3413504_-	cd17281, RMtype1_S_HpyAXIII_TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Helicobacter pylori 26695 S subunit (S	NA|514aa|up_7|NZ_CP020414.2_3413500_3415042_-	TIGR00497, hsdM, type I restriction system adenine methylase (hsdM)	NA|61aa|up_6|NZ_CP020414.2_3415216_3415399_+	NA	NA|87aa|up_5|NZ_CP020414.2_3416292_3416553_+	NA	cas5|208aa|up_4|NZ_CP020414.2_3416989_3417613_-	TIGR02586, CRISPR-associated_protein_Cas5, CRISPR-associated protein Cas5/DevS, subtype MYXAN	cas7|280aa|up_3|NZ_CP020414.2_3417633_3418473_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8b3|629aa|up_2|NZ_CP020414.2_3418537_3420424_-	TIGR03485, hypothetical_protein_L8106_30105, CRISPR-associated protein Cas8a1/Csx13, MYXAN subtype	cas3|751aa|up_1|NZ_CP020414.2_3420431_3422684_-	cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3	cas6|211aa|up_0|NZ_CP020414.2_3422680_3423313_-	TIGR02807, hypothetical_protein_LA_3189, CRISPR-associated protein Cas6, subtype MYXAN	NA|69aa|down_0|NZ_CP020414.2_3424069_3424276_+	NA	cas2|95aa|down_1|NZ_CP020414.2_3424392_3424677_-	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	cas6|70aa|down_2|NZ_CP020414.2_3426780_3426990_-	pfam09559, Cas6, Cas6 Crispr	NA|296aa|down_3|NZ_CP020414.2_3427520_3428408_-	pfam14284, PcfJ, PcfJ-like protein	NA|71aa|down_4|NZ_CP020414.2_3428669_3428882_+	NA	NA|129aa|down_5|NZ_CP020414.2_3429065_3429452_-	NA	NA|184aa|down_6|NZ_CP020414.2_3429794_3430346_-	NA	NA|499aa|down_7|NZ_CP020414.2_3431487_3432984_-	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|279aa|down_8|NZ_CP020414.2_3433548_3434385_-	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins	NA|602aa|down_9|NZ_CP020414.2_3435874_3437680_-	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE)
GCF_002073495.2_ASM207349v2	NZ_CP020414	Leptospira interrogans serovar Copenhageni strain FDAARGOS_203 chromosome, complete genome	8	3740971-3741275	8	CRISPRCasFinder	no		DinG,csa3,cas5,cas8c,cas7,cas4,cas1,cas2,Cas9_archaeal,cas3,WYL,cas8b3,cas6	Orphan	TTCCTAAAGAAATAGGGAATTTAAAAAA	28	0	0	NA	NA	NA	4	4	Orphan	DinG,csa3,cas5,cas8c,cas7,cas4,cas1,cas2,Cas9_archaeal,cas3,WYL,cas8b3,cas6	NA|89aa|up_9|NZ_CP020414.2_3728398_3728665_-,NA|349aa|up_7|NZ_CP020414.2_3730742_3731789_+,NA|56aa|up_5|NZ_CP020414.2_3733758_3733926_-,NA|301aa|up_1|NZ_CP020414.2_3737863_3738766_-,NA|237aa|down_4|NZ_CP020414.2_3748161_3748872_+,NA|153aa|down_9|NZ_CP020414.2_3756601_3757060_-	NA|89aa|up_9|NZ_CP020414.2_3728398_3728665_-	NA	NA|423aa|up_8|NZ_CP020414.2_3729374_3730643_+	NF033161, lipo_LipL41, lipoprotein LipL41	NA|349aa|up_7|NZ_CP020414.2_3730742_3731789_+	NA	NA|500aa|up_6|NZ_CP020414.2_3732082_3733582_+	pfam03961, FapA, Flagellar Assembly Protein A	NA|56aa|up_5|NZ_CP020414.2_3733758_3733926_-	NA	NA|365aa|up_4|NZ_CP020414.2_3734744_3735839_-	COG0182, COG0182, Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]	NA|356aa|up_3|NZ_CP020414.2_3735895_3736963_+	COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism]	NA|155aa|up_2|NZ_CP020414.2_3737167_3737632_+	pfam15662, SPATA3, Spermatogenesis-associated protein 3 family	NA|301aa|up_1|NZ_CP020414.2_3737863_3738766_-	NA	NA|161aa|up_0|NZ_CP020414.2_3740298_3740781_+	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|379aa|down_0|NZ_CP020414.2_3742536_3743673_+	cd07574, nitrilase_Rim1_like, Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases)	NA|174aa|down_1|NZ_CP020414.2_3743724_3744246_+	PRK14900, valS, valyl-tRNA synthetase; Provisional	NA|336aa|down_2|NZ_CP020414.2_3745025_3746033_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|200aa|down_3|NZ_CP020414.2_3747201_3747801_+	pfam05345, He_PIG, Putative Ig domain	NA|237aa|down_4|NZ_CP020414.2_3748161_3748872_+	NA	NA|522aa|down_5|NZ_CP020414.2_3749946_3751512_+	cd17470, T3SS_Flik_C, C-terminal domain of flagellar hook-length control protein FliK and similar domains	NA|265aa|down_6|NZ_CP020414.2_3751526_3752321_+	PRK09618, flgD, flagellar hook assembly protein FlgD	NA|465aa|down_7|NZ_CP020414.2_3752348_3753743_+	PRK05682, flgE, flagellar hook protein FlgE; Validated	NA|661aa|down_8|NZ_CP020414.2_3753977_3755960_+	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]	NA|153aa|down_9|NZ_CP020414.2_3756601_3757060_-	NA
GCF_002073495.2_ASM207349v2	NZ_CP020414	Leptospira interrogans serovar Copenhageni strain FDAARGOS_203 chromosome, complete genome	9	3741385-3741481	9	CRISPRCasFinder	no		DinG,csa3,cas5,cas8c,cas7,cas4,cas1,cas2,Cas9_archaeal,cas3,WYL,cas8b3,cas6	Orphan	TTCCTAAAGAAATAGGGAATTTAAAAAA	28	0	0	NA	NA	NA	1	1	Orphan	DinG,csa3,cas5,cas8c,cas7,cas4,cas1,cas2,Cas9_archaeal,cas3,WYL,cas8b3,cas6	NA|89aa|up_9|NZ_CP020414.2_3728398_3728665_-,NA|349aa|up_7|NZ_CP020414.2_3730742_3731789_+,NA|56aa|up_5|NZ_CP020414.2_3733758_3733926_-,NA|301aa|up_1|NZ_CP020414.2_3737863_3738766_-,NA|237aa|down_4|NZ_CP020414.2_3748161_3748872_+,NA|153aa|down_9|NZ_CP020414.2_3756601_3757060_-	NA|89aa|up_9|NZ_CP020414.2_3728398_3728665_-	NA	NA|423aa|up_8|NZ_CP020414.2_3729374_3730643_+	NF033161, lipo_LipL41, lipoprotein LipL41	NA|349aa|up_7|NZ_CP020414.2_3730742_3731789_+	NA	NA|500aa|up_6|NZ_CP020414.2_3732082_3733582_+	pfam03961, FapA, Flagellar Assembly Protein A	NA|56aa|up_5|NZ_CP020414.2_3733758_3733926_-	NA	NA|365aa|up_4|NZ_CP020414.2_3734744_3735839_-	COG0182, COG0182, Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]	NA|356aa|up_3|NZ_CP020414.2_3735895_3736963_+	COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism]	NA|155aa|up_2|NZ_CP020414.2_3737167_3737632_+	pfam15662, SPATA3, Spermatogenesis-associated protein 3 family	NA|301aa|up_1|NZ_CP020414.2_3737863_3738766_-	NA	NA|161aa|up_0|NZ_CP020414.2_3740298_3740781_+	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|379aa|down_0|NZ_CP020414.2_3742536_3743673_+	cd07574, nitrilase_Rim1_like, Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases)	NA|174aa|down_1|NZ_CP020414.2_3743724_3744246_+	PRK14900, valS, valyl-tRNA synthetase; Provisional	NA|336aa|down_2|NZ_CP020414.2_3745025_3746033_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|200aa|down_3|NZ_CP020414.2_3747201_3747801_+	pfam05345, He_PIG, Putative Ig domain	NA|237aa|down_4|NZ_CP020414.2_3748161_3748872_+	NA	NA|522aa|down_5|NZ_CP020414.2_3749946_3751512_+	cd17470, T3SS_Flik_C, C-terminal domain of flagellar hook-length control protein FliK and similar domains	NA|265aa|down_6|NZ_CP020414.2_3751526_3752321_+	PRK09618, flgD, flagellar hook assembly protein FlgD	NA|465aa|down_7|NZ_CP020414.2_3752348_3753743_+	PRK05682, flgE, flagellar hook protein FlgE; Validated	NA|661aa|down_8|NZ_CP020414.2_3753977_3755960_+	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]	NA|153aa|down_9|NZ_CP020414.2_3756601_3757060_-	NA
GCF_002073495.2_ASM207349v2	NZ_CP020414	Leptospira interrogans serovar Copenhageni strain FDAARGOS_203 chromosome, complete genome	10	3905029-3905122	10	CRISPRCasFinder	no		DinG,csa3,cas5,cas8c,cas7,cas4,cas1,cas2,Cas9_archaeal,cas3,WYL,cas8b3,cas6	Orphan	AGGAAAGCGTTGTGTTGAGTTTT	23	1	2	3905052-3905099|3905052-3905099	NZ_CP020414.2_1365938-1365985|NZ_CP020414.2_3440828-3440781	NA	1	1	Orphan	DinG,csa3,cas5,cas8c,cas7,cas4,cas1,cas2,Cas9_archaeal,cas3,WYL,cas8b3,cas6	NA|54aa|up_9|NZ_CP020414.2_3894785_3894947_+,NA|135aa|up_7|NZ_CP020414.2_3897143_3897548_+,NA|53aa|down_9|NZ_CP020414.2_3916402_3916561_+	NA|54aa|up_9|NZ_CP020414.2_3894785_3894947_+	NA	NA|368aa|up_8|NZ_CP020414.2_3895212_3896316_+	TIGR03699, menaquin_MqnC, dehypoxanthine futalosine cyclase	NA|135aa|up_7|NZ_CP020414.2_3897143_3897548_+	NA	NA|410aa|up_6|NZ_CP020414.2_3897531_3898761_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|270aa|up_5|NZ_CP020414.2_3898874_3899684_-	smart00909, Germane, Sporulation and spore germination	NA|225aa|up_4|NZ_CP020414.2_3899727_3900402_-	COG0546, Gph, Predicted phosphatases [General function prediction only]	NA|417aa|up_3|NZ_CP020414.2_3900485_3901736_+	COG1509, KamA, Lysine 2,3-aminomutase [Amino acid transport and metabolism]	NA|375aa|up_2|NZ_CP020414.2_3901728_3902853_+	TIGR01205, D-alanine--D-alanine_ligase, D-alanine--D-alanine ligase	NA|229aa|up_1|NZ_CP020414.2_3902865_3903552_+	pfam14518, Haem_oxygenas_2, Iron-containing redox enzyme	NA|115aa|up_0|NZ_CP020414.2_3903528_3903873_-	pfam04134, DUF393, Protein of unknown function, DUF393	NA|371aa|down_0|NZ_CP020414.2_3905288_3906401_-	PRK04531, PRK04531, acetylglutamate kinase; Provisional	NA|417aa|down_1|NZ_CP020414.2_3906416_3907667_-	PRK11783, rlmL, bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA|156aa|down_2|NZ_CP020414.2_3907663_3908131_-	cd00907, Bacterioferritin, Bacterioferritin, ferritin-like diiron-binding domain	NA|373aa|down_3|NZ_CP020414.2_3908277_3909396_+	cd00829, SCP-x_thiolase, Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2  has multiple roles in intracellular lipid circulation and metabolism	NA|344aa|down_4|NZ_CP020414.2_3909409_3910441_+	cd03789, GT9_LPS_heptosyltransferase, lipopolysaccharide heptosyltransferase and similar proteins	NA|430aa|down_5|NZ_CP020414.2_3910437_3911727_+	cd01087, Prolidase, Prolidase	NA|188aa|down_6|NZ_CP020414.2_3912078_3912642_+	pfam07600, DUF1564, Protein of unknown function (DUF1564)	NA|179aa|down_7|NZ_CP020414.2_3913367_3913904_+	pfam07600, DUF1564, Protein of unknown function (DUF1564)	NA|763aa|down_8|NZ_CP020414.2_3914145_3916434_+	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE)	NA|53aa|down_9|NZ_CP020414.2_3916402_3916561_+	NA
GCF_002073495.2_ASM207349v2	NZ_CP020414	Leptospira interrogans serovar Copenhageni strain FDAARGOS_203 chromosome, complete genome	11	3981047-3981147	11	CRISPRCasFinder	no		DinG,csa3,cas5,cas8c,cas7,cas4,cas1,cas2,Cas9_archaeal,cas3,WYL,cas8b3,cas6	Orphan	GAGTTCCCACAATTTACACGAGATC	25	0	0	NA	NA	NA	1	1	Orphan	DinG,csa3,cas5,cas8c,cas7,cas4,cas1,cas2,Cas9_archaeal,cas3,WYL,cas8b3,cas6	NA|289aa|up_7|NZ_CP020414.2_3972620_3973487_-,NA|159aa|down_3|NZ_CP020414.2_3987138_3987615_+,NA|118aa|down_6|NZ_CP020414.2_3990562_3990916_+,NA|351aa|down_7|NZ_CP020414.2_3990961_3992014_+	NA|262aa|up_9|NZ_CP020414.2_3970283_3971069_+	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only]	NA|399aa|up_8|NZ_CP020414.2_3971075_3972272_+	COG3000, ERG3, Sterol desaturase [Lipid metabolism]	NA|289aa|up_7|NZ_CP020414.2_3972620_3973487_-	NA	NA|742aa|up_6|NZ_CP020414.2_3973549_3975775_+	PRK00044, psd, phosphatidylserine decarboxylase; Reviewed	NA|109aa|up_5|NZ_CP020414.2_3976137_3976464_+	pfam06155, DUF971, Protein of unknown function (DUF971)	NA|355aa|up_4|NZ_CP020414.2_3977031_3978096_+	PRK08119, PRK08119, flagellar motor switch protein; Validated	NA|274aa|up_3|NZ_CP020414.2_3978092_3978914_+	TIGR03500, FliO_TIGR, flagellar biosynthetic protein FliO	NA|268aa|up_2|NZ_CP020414.2_3978946_3979750_+	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed	NA|88aa|up_1|NZ_CP020414.2_3979746_3980010_+	PRK05700, fliQ, flagellar type III secretion system protein FliQ	NA|260aa|up_0|NZ_CP020414.2_3980016_3980796_+	pfam01311, Bac_export_1, Bacterial export proteins, family 1	NA|706aa|down_0|NZ_CP020414.2_3982742_3984860_+	pfam00771, FHIPEP, FHIPEP family	NA|427aa|down_1|NZ_CP020414.2_3984912_3986193_+	PRK12724, PRK12724, flagellar biosynthesis regulator FlhF; Provisional	NA|305aa|down_2|NZ_CP020414.2_3986220_3987135_+	cd02038, FlhG-like, MinD-like ATPase FlhG	NA|159aa|down_3|NZ_CP020414.2_3987138_3987615_+	NA	NA|267aa|down_4|NZ_CP020414.2_3987742_3988543_+	PRK06288, PRK06288, RNA polymerase sigma factor WhiG; Reviewed	NA|662aa|down_5|NZ_CP020414.2_3988568_3990554_+	pfam03961, FapA, Flagellar Assembly Protein A	NA|118aa|down_6|NZ_CP020414.2_3990562_3990916_+	NA	NA|351aa|down_7|NZ_CP020414.2_3990961_3992014_+	NA	NA|94aa|down_8|NZ_CP020414.2_3992013_3992295_+	PRK04323, PRK04323, hypothetical protein; Provisional	NA|194aa|down_9|NZ_CP020414.2_3992291_3992873_+	PRK14737, gmk, guanylate kinase; Provisional
GCF_002073495.2_ASM207349v2	NZ_CP020413	Leptospira interrogans serovar Copenhageni strain FDAARGOS_203 plasmid unnamed1, complete sequence	1	254696-254886	1	PILER-CR	no		csa3	Orphan	TAAAATGTAGGAACTC	16	0	0	NA	NA	NA	3	3	Orphan	DinG,csa3,cas5,cas8c,cas7,cas4,cas1,cas2,Cas9_archaeal,cas3,WYL,cas8b3,cas6	NA|304aa|up_1|NZ_CP020413.2_252577_253489_+,NA|110aa|down_7|NZ_CP020413.2_265725_266055_+	NA|396aa|up_9|NZ_CP020413.2_244690_245878_+	pfam07603, DUF1566, Protein of unknown function (DUF1566)	NA|272aa|up_8|NZ_CP020413.2_246109_246925_-	TIGR02127, Orotidine_5'-phosphate_decarboxylase, orotidine 5'-phosphate decarboxylase, subfamily 2	NA|281aa|up_7|NZ_CP020413.2_246948_247791_-	PRK00811, PRK00811, polyamine aminopropyltransferase	NA|289aa|up_6|NZ_CP020413.2_247800_248667_-	pfam02675, AdoMet_dc, S-adenosylmethionine decarboxylase	NA|129aa|up_5|NZ_CP020413.2_248766_249153_-	PRK03124, PRK03124, S-adenosylmethionine decarboxylase proenzyme; Provisional	NA|163aa|up_4|NZ_CP020413.2_249619_250108_-	pfam10698, DUF2505, Protein of unknown function (DUF2505)	NA|380aa|up_3|NZ_CP020413.2_250221_251361_+	cd00430, PLPDE_III_AR, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase	NA|382aa|up_2|NZ_CP020413.2_251411_252557_+	smart00563, PlsC, Phosphate acyltransferases	NA|304aa|up_1|NZ_CP020413.2_252577_253489_+	NA	NA|264aa|up_0|NZ_CP020413.2_253485_254277_+	pfam03448, MgtE_N, MgtE intracellular N domain	NA|220aa|down_0|NZ_CP020413.2_255231_255891_-	PTZ00395, PTZ00395, Sec24-related protein; Provisional	NA|772aa|down_1|NZ_CP020413.2_255891_258207_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|206aa|down_2|NZ_CP020413.2_258262_258880_+	cd00254, LT-like, lytic transglycosylase(LT)-like domain	NA|230aa|down_3|NZ_CP020413.2_259302_259992_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|758aa|down_4|NZ_CP020413.2_260636_262910_-	TIGR01340, Homocitrate_dehydratase_mitochondrial, aconitate hydratase, mitochondrial	NA|384aa|down_5|NZ_CP020413.2_263178_264330_-	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|325aa|down_6|NZ_CP020413.2_264505_265480_-	TIGR00462, genX, EF-P lysine aminoacylase GenX	NA|110aa|down_7|NZ_CP020413.2_265725_266055_+	NA	NA|132aa|down_8|NZ_CP020413.2_266374_266770_-	pfam14106, DUF4279, Domain of unknown function (DUF4279)	NA|242aa|down_9|NZ_CP020413.2_266998_267724_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
