The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP020411	Haemophilus influenzae strain FDAARGOS_199 chromosome, complete genome	1830681	438079	530339	1830681	transposase,tRNA,plate,head,tail,holin	Shigella_phage(21.43%)	99	NA	NA
WP_005693602.1|438079_439813_-|tRNA	arginine--tRNA ligase	tRNA	A0A2K9L6Z2	Tupanvirus	34.6	2.6e-86
WP_005671541.1|439892_440474_+	VOC family protein	NA	NA	NA	NA	NA
WP_005647222.1|440787_441252_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_005693601.1|441433_442405_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	37.6	5.8e-11
WP_010869249.1|443052_444702_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_005693598.1|444798_445881_-	alanine racemase	NA	A0A0P0YM39	Yellowstone_lake_mimivirus	29.6	2.7e-33
WP_032828363.1|445890_447297_-	replicative DNA helicase	NA	O80281	Escherichia_phage	68.3	1.3e-168
WP_005653307.1|447438_448875_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_100066292.1|450824_451058_+	DUF935 family protein	NA	B7SDN1	Haemophilus_phage	63.6	1.4e-19
WP_005693593.1|451069_451777_+	hypothetical protein	NA	A0A0M3LSH7	Mannheimia_phage	55.5	8.1e-63
WP_005693592.1|451900_452317_+	phage virion morphogenesis protein	NA	B7SDN8	Haemophilus_phage	68.8	1.6e-47
WP_080613217.1|452385_455322_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_005688502.1|455824_455977_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005688501.1|456009_456546_+	elongation factor P hydroxylase	NA	NA	NA	NA	NA
WP_005688500.1|456744_456957_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032803489.1|457066_458149_+	peptide chain release factor 1	NA	G0YKC3	Acinetobacter_phage	52.8	6.2e-06
WP_005688499.1|458201_458642_+	RDD family protein	NA	NA	NA	NA	NA
WP_005693587.1|458641_459520_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_005654786.1|459519_460323_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_005693586.1|460337_461192_+	3-deoxy-8-phosphooctulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	39.3	1.7e-46
WP_005693583.1|461251_462199_+	2-hydroxyacid dehydrogenase	NA	A0A2R8FDS8	Brazilian_cedratvirus	31.6	2.1e-29
WP_005654778.1|462198_463380_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_005693582.1|463398_464691_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	NA	NA	NA	NA
WP_005693580.1|464699_465842_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_005693578.1|465851_466499_+	DUF452 family protein	NA	NA	NA	NA	NA
WP_005693577.1|466486_467269_+	malonyl-ACP O-methyltransferase BioC	NA	NA	NA	NA	NA
WP_005693576.1|467278_467920_+	ATP-dependent dethiobiotin synthetase BioD	NA	NA	NA	NA	NA
WP_005693575.1|468001_468685_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	40.1	5.6e-37
WP_005693573.1|468684_469935_+	lipoprotein-releasing ABC transporter permease subunit LolE	NA	NA	NA	NA	NA
WP_192940783.1|470173_471241_+	3-deoxy-7-phosphoheptulonate synthase AroG	NA	A0A0B6VT43	Edwardsiella_phage	47.2	2.6e-81
WP_005693571.1|471310_471751_-	LexA family transcriptional regulator	NA	NA	NA	NA	NA
WP_005693570.1|472035_473280_+	serine/threonine transporter SstT	NA	NA	NA	NA	NA
WP_005693569.1|473400_474009_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005693568.1|474008_474563_+	molecular chaperone	NA	NA	NA	NA	NA
WP_005693567.1|474610_475165_-	NAD(P)H nitroreductase	NA	NA	NA	NA	NA
WP_005693566.1|475262_477110_+	signal peptide peptidase SppA	NA	A0A2I6UG67	Salinibacter_virus	28.0	3.0e-16
WP_005693564.1|477147_477945_-|holin	phosphorylcholine transferase LicD	holin	A0A1V0SD50	Indivirus	53.7	7.8e-06
WP_005693563.1|477944_478646_-	NTP transferase domain-containing protein	NA	NA	NA	NA	NA
WP_005672105.1|478642_479521_-|holin	choline transport protein LicB	holin	NA	NA	NA	NA
WP_105163169.1|479520_480501_-	phosphotransferase family protein	NA	NA	NA	NA	NA
WP_005693561.1|480575_482588_-|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	tRNA	NA	NA	NA	NA
WP_005693560.1|482736_483957_+	beta-ketoacyl-ACP synthase I	NA	NA	NA	NA	NA
WP_005628952.1|484023_484287_-	glutaredoxin, GrxA family	NA	A0A2I7SAE2	Vibrio_phage	71.4	3.2e-25
WP_005693559.1|484402_485311_+	RimK family alpha-L-glutamate ligase	NA	A0A1D7SR78	Cyanophage	31.4	5.9e-34
WP_005693557.1|485349_486564_-	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_005693555.1|486605_488849_-	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	36.2	2.6e-86
WP_005693553.1|488915_490814_-	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	35.9	1.0e-96
WP_005693550.1|490887_491823_-	lipid A biosynthesis lauroyl acyltransferase HtrB	NA	A0A1W6JP29	Morganella_phage	38.8	1.2e-50
WP_005693548.1|491919_493350_+	bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE	NA	E3SJ88	Synechococcus_phage	44.6	4.1e-21
WP_005693547.1|493536_494274_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_032828356.1|494827_495673_-	hypothetical protein	NA	F6MIM2	Haemophilus_phage	72.1	2.6e-116
WP_005693545.1|495728_495848_-	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_005693543.1|496331_498203_-|tail	phage tail fiber protein	tail	A0A0M3LRW6	Mannheimia_phage	45.2	2.8e-46
WP_005693542.1|498202_498805_-	YmfQ family protein	NA	A0A2I7S9L6	Vibrio_phage	33.5	8.2e-24
WP_005693541.1|498795_499863_-|plate	baseplate J/gp47 family protein	plate	A0A0C4UQU9	Shigella_phage	43.1	4.6e-70
WP_005693540.1|499862_500270_-	phage GP46 family protein	NA	A0A0C4UR04	Shigella_phage	43.3	2.3e-22
WP_005693539.1|500278_500827_-|plate	phage baseplate assembly protein V	plate	A0A2I7S9F6	Vibrio_phage	44.0	4.7e-26
WP_032828355.1|500863_501340_-|tail	tail protein	tail	C9DGQ3	Escherichia_phage	38.9	2.7e-14
WP_005693538.1|501339_502125_-|tail	tail protein	tail	A0A0C4UQS1	Shigella_phage	37.9	1.9e-44
WP_010869234.1|502124_503492_-	DNA circularization protein	NA	A0A0C4UR32	Shigella_phage	29.8	8.4e-40
WP_005693536.1|503491_505387_-	tape measure domain-containing protein	NA	A0A2I7S9D9	Vibrio_phage	33.7	1.7e-54
WP_005693534.1|505467_505851_-|tail	phage tail assembly protein	tail	C9DGP9	Escherichia_phage	49.6	5.6e-18
WP_005693533.1|505863_506220_-|tail	phage tail tube protein	tail	A0A0C4UQZ1	Shigella_phage	36.0	4.3e-12
WP_005693532.1|506229_507693_-|tail	phage tail sheath protein	tail	A0A0C4UQS0	Shigella_phage	46.6	6.3e-118
WP_005693531.1|507692_507884_-	DUF2635 domain-containing protein	NA	NA	NA	NA	NA
WP_005693530.1|507896_508448_-	DUF1834 family protein	NA	A0A0C4UQU7	Shigella_phage	42.0	2.6e-32
WP_005693528.1|508447_508873_-	gp436 family protein	NA	A0A0C4UR02	Shigella_phage	37.4	1.3e-15
WP_005693527.1|508875_509262_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005693526.1|509344_510271_-|head	phage head protein	head	A0SMP3	Pseudomonas_virus	52.9	1.3e-76
WP_005693524.1|510270_511338_-	hypothetical protein	NA	A0A0C4UQU6	Shigella_phage	47.8	4.3e-76
WP_005693523.1|511569_512010_-	phage virion morphogenesis protein	NA	NA	NA	NA	NA
WP_005693522.1|512147_513497_-|head	phage head morphogenesis protein	head	C9DGN7	Escherichia_phage	41.5	7.4e-89
WP_010869229.1|513483_515046_-	DUF935 domain-containing protein	NA	A0A0C4UQR8	Shigella_phage	53.1	9.9e-146
WP_005693520.1|515057_516584_-	hypothetical protein	NA	A0A2I7S9C5	Vibrio_phage	58.7	1.0e-158
WP_005693519.1|516583_517153_-	DUF3486 family protein	NA	A0A2I7S9D1	Vibrio_phage	44.8	6.5e-39
WP_005693518.1|517175_517472_-	hypothetical protein	NA	A0A2I7S9D8	Vibrio_phage	62.5	5.3e-24
WP_005693517.1|517476_517896_-	DUF2730 domain-containing protein	NA	NA	NA	NA	NA
WP_005693516.1|517802_518030_-	TraR/DksA family transcriptional regulator	NA	NA	NA	NA	NA
WP_005693513.1|518147_518402_-	DUF2681 domain-containing protein	NA	NA	NA	NA	NA
WP_005693512.1|518398_518659_-	DUF2644 domain-containing protein	NA	F6MIK0	Haemophilus_phage	56.7	1.8e-12
WP_032828354.1|518665_519211_-	N-acetylmuramoyl-L-alanine amidase	NA	F6MIJ9	Haemophilus_phage	72.1	1.1e-78
WP_005693510.1|519292_519799_-	hypothetical protein	NA	A0A1I9KF52	Aeromonas_phage	33.5	1.9e-13
WP_005693509.1|519807_520242_-	transcriptional regulator	NA	A0A0C4UQZ9	Shigella_phage	44.0	1.7e-23
WP_005693508.1|520434_520989_-	hypothetical protein	NA	A0A0M3LPP6	Mannheimia_phage	54.6	8.3e-47
WP_005693507.1|520985_521543_-	gp16 family protein	NA	A0A2I7S9B8	Vibrio_phage	30.6	1.4e-14
WP_005693506.1|521716_522277_-	DUF5420 family protein	NA	A0A0M3LP85	Mannheimia_phage	35.2	7.2e-22
WP_005693505.1|522279_522453_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005693504.1|522452_522674_-	ANR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005693503.1|522853_523147_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005693501.1|523146_523308_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005693500.1|523304_523814_-	nuclease inhibitor	NA	F6MIJ0	Haemophilus_phage	77.7	1.6e-65
WP_005693499.1|523828_524146_-	hypothetical protein	NA	A0A0M3LQH1	Mannheimia_phage	50.5	1.1e-16
WP_005693498.1|524154_525072_-	AAA family ATPase	NA	A0A0C4UQR3	Shigella_phage	46.6	5.9e-66
WP_005693497.1|525105_525576_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005693495.1|525508_525781_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005693494.1|525837_527901_-|transposase	Mu transposase C-terminal domain-containing protein	transposase	A0A2P9JZG7	Alteromonadaceae_phage	42.9	4.4e-125
WP_005693493.1|527934_528204_-	transcriptional regulator	NA	F6MII4	Haemophilus_phage	60.5	4.6e-19
WP_005693492.1|528431_529151_+	helix-turn-helix transcriptional regulator	NA	F6MII3	Haemophilus_phage	53.1	1.0e-65
WP_005645090.1|529739_530339_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	30.6	5.3e-15
>prophage 2
NZ_CP020411	Haemophilus influenzae strain FDAARGOS_199 chromosome, complete genome	1830681	559385	590042	1830681	tRNA,integrase,protease,tail,holin,terminase	Haemophilus_phage(27.78%)	38	560821:560836	577978:577993
WP_005650453.1|559385_559838_+|protease	ClpXP protease specificity-enhancing factor	protease	A0A1S5R3H3	Pseudomonas_phage	56.1	2.5e-25
WP_005650455.1|559873_561751_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
560821:560836	attL	CACTGATTGGATCAAA	NA	NA	NA	NA
WP_005693922.1|561792_562683_-	(2E,6E)-farnesyl diphosphate synthase	NA	NA	NA	NA	NA
WP_005693923.1|562682_562937_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_005693924.1|563096_564554_+|tRNA	tRNA 4-thiouridine(8) synthase ThiI	tRNA	NA	NA	NA	NA
WP_005693925.1|564568_564889_+	YqcC family protein	NA	NA	NA	NA	NA
WP_005693926.1|564882_565602_+|tRNA	tRNA pseudouridine(65) synthase TruC	tRNA	NA	NA	NA	NA
WP_005628875.1|565594_565753_+	YoaH family protein	NA	NA	NA	NA	NA
WP_005652728.1|565901_566120_+	cold shock domain-containing protein CspD	NA	Q9AZD3	Lactococcus_phage	51.6	1.4e-10
WP_005631703.1|566276_566753_-|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_005693928.1|566811_567765_+	oxidoreductase	NA	NA	NA	NA	NA
WP_005693930.1|567902_568709_-	tryptophan synthase subunit alpha	NA	NA	NA	NA	NA
WP_005693932.1|568708_569902_-	tryptophan synthase subunit beta	NA	NA	NA	NA	NA
WP_005693935.1|569918_570677_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005693936.1|570856_571891_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	45.6	3.9e-74
WP_005693938.1|571945_572584_+	phosphoribosylglycinamide formyltransferase	NA	E3SNR5	Prochlorococcus_phage	40.0	2.6e-28
WP_005693940.1|572668_573505_-	DUF4198 domain-containing protein	NA	NA	NA	NA	NA
WP_005656626.1|573704_574634_-	universal stress protein UspE	NA	NA	NA	NA	NA
WP_005662331.1|574755_575529_-	fumarate/nitrate reduction transcriptional regulator Fnr	NA	NA	NA	NA	NA
WP_005693942.1|576040_576955_+|integrase	site-specific integrase	integrase	A0A0M3LQN1	Mannheimia_phage	52.2	1.5e-80
WP_005693943.1|576955_577240_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005693944.1|577527_578103_-	antA/AntB antirepressor family protein	NA	A0A0M3LQ72	Mannheimia_phage	55.2	5.2e-52
577978:577993	attR	TTTGATCCAATCAGTG	NA	NA	NA	NA
WP_050396694.1|578171_578534_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005643896.1|578564_578858_-	putative addiction module antidote protein	NA	A4JWV1	Burkholderia_virus	46.6	8.3e-14
WP_005693946.1|578854_579154_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A141GEX6	Brucella_phage	45.3	7.9e-20
WP_005693947.1|579514_580183_+	Bro-N domain-containing protein	NA	D0UIM5	Aggregatibacter_phage	65.4	3.2e-69
WP_165442161.1|580258_580396_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005650535.1|580519_580876_+|holin	phage holin, lambda family	holin	NA	NA	NA	NA
WP_005693948.1|580844_581447_+	glycoside hydrolase family 19 protein	NA	Q7Y5V0	Haemophilus_phage	53.4	2.1e-56
WP_005693950.1|581439_581715_+	DUF2570 family protein	NA	Q7Y5U9	Haemophilus_phage	47.2	2.5e-12
WP_005693951.1|581626_581908_+	hypothetical protein	NA	Q776X1	Haemophilus_phage	73.3	9.4e-31
WP_010869207.1|582035_582557_+	Rha family transcriptional regulator	NA	A0A0P0HSR5	Acinetobacter_phage	34.9	2.8e-20
WP_005693952.1|582566_583082_+|terminase	terminase small subunit	terminase	A0A1X9SFE5	Acinetobacter_phage	40.9	5.6e-21
WP_005693953.1|583068_584412_+|terminase	PBSX family phage terminase large subunit	terminase	A0A220NQL3	Acinetobacter_phage	54.1	3.1e-124
WP_005693954.1|584413_585724_+	DUF1073 domain-containing protein	NA	Q7Y5U6	Haemophilus_phage	84.2	1.3e-210
WP_005693956.1|587478_587835_+	DUF2513 domain-containing protein	NA	NA	NA	NA	NA
WP_005693957.1|587895_588996_+	DUF2213 domain-containing protein	NA	Q7Y5U2	Haemophilus_phage	85.9	3.1e-138
WP_010869205.1|589493_590042_+|tail	tail fiber protein	tail	Q94MY0	Haemophilus_virus	49.2	1.1e-19
>prophage 3
NZ_CP020411	Haemophilus influenzae strain FDAARGOS_199 chromosome, complete genome	1830681	830856	839370	1830681		uncultured_Caudovirales_phage(16.67%)	8	NA	NA
WP_005694253.1|830856_831540_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	50.2	2.3e-54
WP_005663812.1|831532_831958_+	6-carboxytetrahydropterin synthase QueD	NA	A0A1U9WRB3	Streptococcus_virus	42.7	1.3e-20
WP_005686506.1|831958_832594_+	7-carboxy-7-deazaguanine synthase QueE	NA	S4TZT1	uncultured_phage	30.3	8.7e-16
WP_032828438.1|833208_835389_+	DNA helicase II	NA	A7KV33	Bacillus_phage	37.4	1.1e-115
WP_164927863.1|835478_836480_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_005653671.1|836494_837382_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_005694258.1|837391_838384_+	dipeptide ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.8	2.0e-14
WP_005691143.1|838386_839370_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.8	1.8e-20
>prophage 4
NZ_CP020411	Haemophilus influenzae strain FDAARGOS_199 chromosome, complete genome	1830681	971632	983720	1830681		Escherichia_phage(71.43%)	12	NA	NA
WP_005686318.1|971632_973477_+	ABC transporter ATP-binding protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	29.3	2.8e-22
WP_005662887.1|973601_973880_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_005686315.1|973888_974251_-	membrane protein	NA	NA	NA	NA	NA
WP_005693384.1|974225_975335_-	transglutaminase family protein	NA	NA	NA	NA	NA
WP_005693382.1|975588_978009_+	molybdopterin-dependent oxidoreductase	NA	A0A077SK27	Escherichia_phage	50.6	4.8e-224
WP_005656008.1|978019_978637_+	dimethylsulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	56.8	2.2e-72
WP_005693381.1|978638_979478_+	dimethyl sulfoxide reductase anchor subunit	NA	A0A077SK59	Escherichia_phage	31.4	5.5e-18
WP_005693380.1|979589_980201_+	Tat proofreading chaperone DmsD	NA	A0A077SLS7	Escherichia_phage	32.5	1.0e-21
WP_005693377.1|980200_980701_+	ferredoxin-type protein NapF	NA	A0A077SLP0	Escherichia_phage	32.6	3.8e-14
WP_032828348.1|980978_981227_+	B12-binding domain-containing protein	NA	NA	NA	NA	NA
WP_080003770.1|981220_982660_+	cobalamin-dependent protein	NA	NA	NA	NA	NA
WP_005693374.1|982805_983720_-	DNA cytosine methyltransferase	NA	M1PSQ0	Streptococcus_phage	30.6	2.7e-26
>prophage 5
NZ_CP020411	Haemophilus influenzae strain FDAARGOS_199 chromosome, complete genome	1830681	1761129	1764882	1830681		uncultured_virus(100.0%)	7	NA	NA
WP_005631184.1|1761129_1761336_+	heavy-metal-associated domain-containing protein	NA	A0A218MNH0	uncultured_virus	52.2	3.0e-10
WP_005656255.1|1761410_1761617_+	heavy-metal-associated domain-containing protein	NA	A0A218MNH0	uncultured_virus	50.7	6.7e-10
WP_005656255.1|1761690_1761897_+	heavy-metal-associated domain-containing protein	NA	A0A218MNH0	uncultured_virus	50.7	6.7e-10
WP_005656255.1|1761971_1762178_+	heavy-metal-associated domain-containing protein	NA	A0A218MNH0	uncultured_virus	50.7	6.7e-10
WP_005656255.1|1762252_1762459_+	heavy-metal-associated domain-containing protein	NA	A0A218MNH0	uncultured_virus	50.7	6.7e-10
WP_005656255.1|1762532_1762739_+	heavy-metal-associated domain-containing protein	NA	A0A218MNH0	uncultured_virus	50.7	6.7e-10
WP_005694020.1|1762713_1764882_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	51.4	6.7e-193
