The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP020381	Mycobacterium tuberculosis strain MTB1, complete genome	4433542	2942092	2980364	4433542	integrase,tRNA,protease,head,terminase,capsid	Mycobacterium_phage(30.0%)	48	2970893:2970920	2980517:2980544
WP_003413486.1|2942092_2944171_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	34.9	2.5e-104
WP_003413487.1|2944279_2944507_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009938541.1|2944503_2945889_-	PE family protein	NA	NA	NA	NA	NA
WP_003413569.1|2946233_2946734_+	DUF1990 family protein	NA	NA	NA	NA	NA
WP_003413574.1|2946750_2947191_-	DoxX family membrane protein	NA	NA	NA	NA	NA
WP_003901437.1|2947337_2948015_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003413583.1|2947999_2948353_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003413586.1|2948365_2948791_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003413588.1|2948787_2949462_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003413589.1|2949539_2950361_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003413592.1|2950496_2951390_+	universal stress protein	NA	NA	NA	NA	NA
WP_003413594.1|2951392_2952211_-	universal stress protein	NA	NA	NA	NA	NA
WP_003899401.1|2952225_2953407_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_003413598.1|2953465_2953897_-	CBS domain-containing protein	NA	A0A2I6B2H4	Macacine_betaherpesvirus	100.0	1.9e-75
WP_003899402.1|2954410_2955652_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003899403.1|2955961_2956324_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413610.1|2956670_2957795_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413614.1|2957796_2958336_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413616.1|2958475_2959774_+	RNA-splicing ligase RtcB	NA	A2RQD0	Archaeal_BJ1_virus	43.3	3.8e-90
WP_003413619.1|2959812_2960094_-	DUF1876 domain-containing protein	NA	NA	NA	NA	NA
WP_003413625.1|2960238_2960724_-	hemerythrin domain-containing protein	NA	NA	NA	NA	NA
WP_003902325.1|2960750_2961008_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080520800.1|2961008_2963345_-	PE family protein	NA	NA	NA	NA	NA
WP_003899405.1|2963373_2963616_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899406.1|2963616_2964294_+	membrane protein	NA	NA	NA	NA	NA
WP_003413654.1|2964489_2965146_+	DedA family protein	NA	NA	NA	NA	NA
WP_003413657.1|2965308_2965755_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_003413663.1|2965929_2966262_-	YnfA family protein	NA	NA	NA	NA	NA
WP_003413665.1|2966381_2966741_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413675.1|2966842_2967301_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_003899407.1|2967436_2967817_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413686.1|2967813_2969310_+	ACR3 family arsenite efflux transporter	NA	A0A2H4PQT9	Staphylococcus_phage	39.7	5.1e-14
WP_085972563.1|2969499_2969736_+	antitoxin MazE family protein	NA	NA	NA	NA	NA
WP_077365235.1|2969808_2969982_+	hypothetical protein	NA	NA	NA	NA	NA
2970893:2970920	attL	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
WP_003899409.1|2971026_2971458_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003900538.1|2971454_2972453_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D1G8E2	Mycobacterium_phage	47.8	7.4e-62
WP_003900539.1|2972466_2972931_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003908028.1|2972918_2973170_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899411.1|2973340_2974780_-|capsid	phage major capsid protein	capsid	A0A1B3AYS4	Gordonia_phage	40.6	1.4e-66
WP_003899412.1|2974787_2975321_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	32.9	3.1e-06
WP_003899413.1|2975473_2976100_-|terminase	phage terminase small subunit P27 family	terminase	V9H0V4	Actinophage	47.2	1.6e-17
WP_003899414.1|2976131_2976455_-	type II toxin-antitoxin system toxin	NA	NA	NA	NA	NA
WP_003899415.1|2976534_2976780_-	antitoxin	NA	NA	NA	NA	NA
WP_031664026.1|2976776_2978204_-	DUF3631 domain-containing protein	NA	NA	NA	NA	NA
WP_003899417.1|2978205_2978598_-	DUF2742 domain-containing protein	NA	NA	NA	NA	NA
WP_003899418.1|2978594_2978855_-	helix-turn-helix domain-containing protein	NA	A0A2P1CHK7	Mycobacterium_phage	64.6	3.0e-15
WP_003900543.1|2978871_2979234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003899420.1|2979236_2980364_-|integrase	site-specific integrase	integrase	A0A1X9SFC1	Mycobacterium_phage	40.4	1.5e-66
2980517:2980544	attR	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
>prophage 2
NZ_CP020381	Mycobacterium tuberculosis strain MTB1, complete genome	4433542	3723020	3775292	4433542	tRNA,transposase	Burkholderia_virus(50.0%)	27	NA	NA
WP_087902221.1|3723020_3724282_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_003913037.1|3724448_3725513_-	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_003902443.1|3725567_3725918_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010950871.1|3725895_3726282_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003915711.1|3726229_3727303_+	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_003913449.1|3727397_3727835_-	hypothetical protein	NA	NA	NA	NA	NA
WP_087902221.1|3727978_3729240_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_009937401.1|3729566_3729728_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003902445.1|3729749_3731279_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_003417413.1|3731211_3732150_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003902446.1|3732158_3733526_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	25.8	9.0e-18
WP_003417415.1|3733594_3734812_+	D-alanyl-D-alanine carboxypeptidase	NA	A0A1P8VVG5	Erythrobacter_phage	27.3	8.0e-10
WP_003417416.1|3734907_3736416_+	sugar porter family MFS transporter	NA	NA	NA	NA	NA
WP_003417418.1|3736412_3737564_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
WP_003417421.1|3737754_3738600_-	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003900026.1|3739074_3739515_+	heavy metal-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003417435.1|3739548_3740418_-	inner membrane protein YhjD	NA	NA	NA	NA	NA
WP_003417440.1|3740438_3741449_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_009940431.1|3741733_3742366_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003417452.1|3742432_3743662_-	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_003900028.1|3743944_3745294_+	bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase	NA	A0A0B5JD48	Pandoravirus	26.5	2.5e-12
WP_003417458.1|3745305_3746445_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003417461.1|3746441_3747173_+	methyltransferase	NA	NA	NA	NA	NA
WP_080520867.1|3747181_3756523_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417619.1|3762875_3763133_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_087902221.1|3770272_3771533_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_049961743.1|3774845_3775292_+|transposase	transposase	transposase	NA	NA	NA	NA
