The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013906	Bordetella pertussis strain J276 chromosome, complete genome	4108478	27282	70036	4108478	tRNA,transposase	Synechococcus_phage(50.0%)	42	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP013906	Bordetella pertussis strain J276 chromosome, complete genome	4108478	77634	136108	4108478	tRNA,transposase	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP013906	Bordetella pertussis strain J276 chromosome, complete genome	4108478	164894	225405	4108478	protease,tRNA,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164894_165845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167288_168191_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168168_168798_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169080_170511_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170544_171174_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171222_172830_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172854_173538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173619_174096_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174302_175253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176368_176896_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176987_177803_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177863_178598_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178635_180714_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180963_181236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181337_182423_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182426_184331_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184327_188002_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188062_188626_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188633_189056_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189083_189503_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189531_189978_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190104_190602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190756_193027_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193102_194308_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194406_195357_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195459_196095_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196091_196985_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197379_198480_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198561_198936_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198995_201860_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202004_202745_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202814_204026_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204054_205023_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205636_206587_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206743_207067_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207171_208212_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208217_208997_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209042_209339_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209364_209640_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209696_210341_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210340_211027_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211225_212008_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212058_212784_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212815_214165_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214276_215209_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215666_218462_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219055_221899_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222069_222789_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222827_223376_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223530_224430_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224454_225405_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP013906	Bordetella pertussis strain J276 chromosome, complete genome	4108478	233337	287973	4108478	protease,tRNA,transposase	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233337_234288_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234374_235325_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|235321_236272_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236370_237321_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237419_238217_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239166_239577_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|240598_241342_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241385_242429_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242599_244702_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246112_247069_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247087_247579_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247575_248931_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248931_249630_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249626_250328_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250580_251630_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251735_252677_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252673_254563_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254649_255288_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|255430_256816_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256746_257283_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257434_258826_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258842_259823_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259958_260942_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261006_261906_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262012_263767_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263774_264899_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264912_265893_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|266623_267574_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268133_268679_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|268804_270382_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270397_271552_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271565_271691_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271687_273439_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273435_275115_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275177_275726_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276868_277147_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278190_279141_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|279417_279579_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|280245_280695_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280704_281316_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|281474_282323_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282348_283731_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283795_284437_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284576_285035_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285059_285836_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285889_287026_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287022_287973_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP013906	Bordetella pertussis strain J276 chromosome, complete genome	4108478	391906	449415	4108478	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|391906_392857_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|392993_393911_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|393907_394156_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|394152_395358_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|395430_396426_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|396448_397669_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|397665_398310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|400040_400850_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|401154_402108_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|402206_403190_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|403116_403818_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|403866_404637_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|404633_405812_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|405979_407686_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|407682_408579_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|408619_410209_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|410258_411251_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|411319_411919_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|412379_413360_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|413435_414386_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|414474_415389_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|415385_416045_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|416134_417058_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|417063_417519_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|417515_418619_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|418577_418847_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|418806_420426_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|420422_421481_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|421610_422105_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|422197_423175_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|423370_424576_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|424572_426084_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|426099_427413_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|427603_427783_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|428192_428927_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|431371_432322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|432453_432852_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|433262_433733_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|433821_434166_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|434265_435666_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|437454_437973_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|438083_438839_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|439034_440267_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|440259_441045_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|441111_442083_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|442093_443071_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|443196_444369_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|444395_445424_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|445489_446683_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|448464_449415_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP013906	Bordetella pertussis strain J276 chromosome, complete genome	4108478	590420	651611	4108478	protease,transposase	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|590420_591371_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|591846_592737_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592733_593555_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593754_594246_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594264_595338_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595384_596488_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596563_597184_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597204_597714_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597768_598020_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598083_599217_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599224_599611_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|599607_602127_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602555_602894_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|602890_603397_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603458_604259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604369_605311_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605404_606940_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608619_610470_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610473_611307_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611306_612248_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|612499_613471_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613612_615901_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616207_617116_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617170_618136_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|618210_619872_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|619943_620654_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|620620_620785_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|620802_621753_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622451_622835_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|622892_623495_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|623512_623914_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|624029_624941_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|624937_625519_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|626313_627048_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|627088_628138_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|628285_628864_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|629250_630228_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|630321_634716_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|634916_635765_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|635923_636736_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|636791_637742_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|637840_638641_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|638702_639086_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|639097_640450_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|640737_641067_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|641069_641819_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|642001_642922_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|642968_643181_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|643203_643626_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|643642_644743_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|644839_646357_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|646432_647272_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|647293_648166_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|648256_649351_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|649644_650595_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|650669_651611_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP013906	Bordetella pertussis strain J276 chromosome, complete genome	4108478	656935	703126	4108478	tail,terminase,tRNA,transposase	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|656935_657961_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|658001_658241_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|658310_659900_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|659899_660448_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|660528_661101_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|661119_662031_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|662104_663073_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|663195_664269_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|664273_666094_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|666170_667121_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|667209_667545_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|667678_668329_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|668350_669769_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|669838_670594_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|670562_671321_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|671331_672213_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|672229_672937_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|672939_673698_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|673907_675650_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|675642_676167_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|676206_677001_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|677168_678242_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|678340_679291_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|679542_679749_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|679820_680432_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|680986_681238_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|681230_681920_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023999802.1|681937_682159_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|682176_683127_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|683766_684252_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|684238_685516_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|685518_686937_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|686965_688021_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|688026_688269_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|688391_688994_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|689422_690373_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|691047_691299_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|691361_691844_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|691857_692046_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|692045_692441_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|692437_692836_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|692832_693255_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|693262_693763_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|694017_694536_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|694545_694875_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|694892_695183_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|695208_697821_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|697830_698190_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|698257_698791_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|698787_699177_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|699169_703126_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP013906	Bordetella pertussis strain J276 chromosome, complete genome	4108478	709292	763222	4108478	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|709292_711023_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|711075_711504_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|711506_712187_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|712186_712645_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|712681_713656_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|713672_714989_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|715020_715518_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|715604_716294_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|716293_717343_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|717339_718134_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|718302_718653_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|718628_719186_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|720315_721266_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|723403_724633_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|724635_726078_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|726182_727328_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|727359_728157_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|728181_729741_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|729737_732110_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|732219_733323_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|733322_734015_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|734158_734860_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|734844_735222_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|735953_736904_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|737063_737936_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|738276_738495_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|738534_739914_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|739955_741353_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|741392_743045_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|743048_743933_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|743932_744874_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|744952_746572_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|746738_747554_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|747621_748191_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|748191_749142_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|749796_750894_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|750927_752193_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|752350_753301_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|753544_754135_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|754150_756595_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|756714_757686_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|757817_758342_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|758301_759252_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|759473_761669_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|761741_762149_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|762271_763222_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP013906	Bordetella pertussis strain J276 chromosome, complete genome	4108478	885811	953787	4108478	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|885811_886828_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|887024_888008_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|889606_890995_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|891025_892015_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|892125_893358_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|893639_894440_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|894462_896694_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|897481_897928_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|897949_898696_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|898839_899817_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|900450_901062_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|901055_902273_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|902413_903364_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|903360_904080_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|904200_906360_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|906450_906720_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|906808_907015_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|907013_907541_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|907559_908339_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|908506_909523_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|909595_910087_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|910097_911813_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|912976_913927_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|913923_915756_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|916154_916814_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|917341_918022_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|918303_919020_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919034_920336_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|922480_925369_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|925592_926945_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|926973_927495_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|927491_928946_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|928980_929229_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|929334_930210_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|930235_931291_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|931303_932095_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|932127_933498_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|934674_935625_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935677_935899_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936058_936271_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936390_937509_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|937605_937821_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|938014_938266_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938378_939329_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939325_939709_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939763_941578_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941727_942555_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942600_943581_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943577_943790_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943786_944968_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945131_945866_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945867_948480_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948615_950529_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951144_951555_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951652_952738_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952836_953787_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP013906	Bordetella pertussis strain J276 chromosome, complete genome	4108478	997316	1069833	4108478	tRNA,transposase	Enterococcus_phage(14.29%)	60	NA	NA
WP_005012067.1|997316_998267_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|998371_999421_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|999558_1000575_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1002083_1002656_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1002715_1003447_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1003498_1004416_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1005223_1008403_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1008399_1009782_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1009851_1010103_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1010248_1010863_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1011049_1013110_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1013239_1014091_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1014087_1014714_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1014710_1016465_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1016757_1019463_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1019475_1021137_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1021149_1022940_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1023161_1024337_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1024379_1025330_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1025428_1026169_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1026363_1028400_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1028417_1029428_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1029545_1030739_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1030768_1031542_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1031538_1032729_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1032754_1033693_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1033689_1036038_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1036192_1036834_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1038163_1038316_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1038347_1038896_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1038914_1039400_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1039577_1040516_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1040518_1040836_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1040881_1041826_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1043506_1044157_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1044210_1044546_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1044542_1045403_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1045419_1045701_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1045774_1046038_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1046281_1047232_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1047530_1048268_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1048703_1049027_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1049061_1049622_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1049742_1050618_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1050630_1051578_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1051679_1051973_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1051999_1054057_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1054071_1054572_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1054645_1056352_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1057215_1058268_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1058320_1058710_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1058718_1059351_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1059450_1060467_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1061297_1062305_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1062301_1063945_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1063941_1064829_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1064969_1065443_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1065432_1066455_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1066451_1067879_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068816_1069833_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP013906	Bordetella pertussis strain J276 chromosome, complete genome	4108478	1073586	1135661	4108478	holin,tRNA,transposase	Catovirus(20.0%)	52	NA	NA
WP_010930155.1|1073586_1074723_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074719_1075793_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1075950_1077387_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077477_1078119_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1078454_1079471_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1081513_1082464_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1083666_1085088_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085351_1086068_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086152_1086470_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086510_1086924_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086925_1087285_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087327_1088872_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088955_1089786_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089820_1090975_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091017_1091890_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1092006_1094295_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095501_1095966_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1095992_1096943_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1096960_1097098_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1097310_1098087_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098131_1098989_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099010_1100027_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100161_1101202_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101396_1103478_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103713_1105207_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105437_1106232_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106452_1107811_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107807_1108650_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108668_1110555_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1110496_1110748_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110792_1111425_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111443_1112046_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_161633091.1|1113727_1114435_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114793_1115780_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115919_1116933_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1116929_1117880_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1117897_1118038_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1117992_1118451_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1118487_1119801_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1119818_1120190_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1120186_1121650_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1121790_1122519_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1122500_1125350_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1125562_1126513_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1126680_1127505_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1127504_1128383_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1129287_1130403_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1130431_1131226_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1131222_1133088_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1133166_1133799_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1133795_1134098_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1134140_1135661_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP013906	Bordetella pertussis strain J276 chromosome, complete genome	4108478	1153231	1219750	4108478	tRNA,transposase	Erysipelothrix_phage(33.33%)	54	NA	NA
WP_023853221.1|1153231_1155028_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1155027_1155996_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1156065_1156911_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1156978_1157533_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1157579_1158530_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1158628_1159261_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1159425_1161708_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1161862_1164559_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1164684_1165173_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1167583_1170454_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1170499_1171714_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1171943_1173371_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1173468_1174560_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1174572_1175331_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1175418_1176321_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1176317_1177268_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1177397_1178381_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1178435_1179158_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1180636_1181992_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1182072_1184448_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1184612_1186688_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1186749_1187544_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1187651_1188614_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1188601_1189357_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1189464_1191102_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1191169_1191907_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1192009_1192585_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1192757_1193294_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1193326_1193641_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1193656_1194502_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1194540_1195920_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1195997_1196879_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1196977_1197928_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1197924_1198335_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1198442_1199297_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1199289_1200252_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1200297_1201422_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1201527_1202406_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1202530_1203310_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1203463_1204885_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1205319_1207017_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1207243_1208185_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1208511_1209258_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1209265_1210192_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1210313_1211231_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1211270_1212224_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1212248_1212827_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1214500_1215109_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1215186_1215540_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1215623_1216613_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_023852977.1|1216609_1216798_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879566.1|1216815_1217766_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1217852_1218803_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1218799_1219750_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP013906	Bordetella pertussis strain J276 chromosome, complete genome	4108478	1270678	1327889	4108478	transposase	Klosneuvirus(16.67%)	49	NA	NA
WP_010931070.1|1270678_1271629_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1275375_1275987_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1276209_1277670_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1277766_1279359_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1279712_1279970_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1279971_1281312_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1281407_1282097_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1282109_1283540_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1285264_1286086_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1286096_1287668_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1287696_1288674_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1288700_1289504_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1289500_1290295_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1290302_1291538_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1291551_1291965_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1292714_1293665_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1294286_1296014_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1296125_1297484_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1297540_1297759_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1297776_1298727_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1298767_1299838_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1299860_1300739_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1300910_1301882_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1302044_1302887_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1303048_1303729_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1303722_1304892_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1304888_1305920_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_023853282.1|1305987_1307205_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1307239_1308772_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1308852_1309476_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1309506_1310118_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1310153_1310624_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1311055_1312060_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1312096_1313611_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1313614_1314574_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1314602_1315406_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1315407_1317042_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1317125_1318187_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1318385_1318655_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1318658_1319183_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1319598_1320549_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1320545_1321580_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1321688_1322327_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1322621_1322849_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1322971_1323685_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1323929_1324880_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853496.1|1325019_1325265_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1325379_1326828_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1326938_1327889_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP013906	Bordetella pertussis strain J276 chromosome, complete genome	4108478	1419171	1472350	4108478	tRNA,transposase	Salmonella_phage(22.22%)	46	NA	NA
WP_005013747.1|1419171_1420122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1420139_1420292_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1420288_1420642_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1420654_1421017_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1421058_1421484_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1421686_1422943_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1423141_1424122_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1424271_1425513_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1425611_1426562_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1426570_1427266_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1430086_1430686_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1430696_1432862_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1432885_1434670_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1434669_1434759_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1435453_1435726_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1435725_1437792_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1437788_1438739_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1438854_1439187_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1439183_1439870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1439856_1440816_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1440848_1443218_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1443217_1443850_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1443951_1445292_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1445338_1446694_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1446984_1447221_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1447408_1447726_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1447998_1448514_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1448784_1449540_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1449878_1450085_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1450092_1450752_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1451046_1453251_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1453361_1454585_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1454707_1455682_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1455749_1456943_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1456957_1457758_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1457754_1459611_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1459607_1460213_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1460231_1461617_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1462342_1463569_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1463657_1464440_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1464538_1465489_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1465515_1466289_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1466300_1467542_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1469323_1470274_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|1470305_1471403_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_005013747.1|1471399_1472350_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP013906	Bordetella pertussis strain J276 chromosome, complete genome	4108478	1573160	1644314	4108478	transposase	Ectocarpus_siliculosus_virus(10.0%)	54	NA	NA
WP_005012808.1|1573160_1574111_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1574132_1575353_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1575538_1576951_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1577014_1578082_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1578081_1579569_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1579578_1580523_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1580682_1581381_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1581458_1582364_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1582383_1583334_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248220.1|1583432_1584227_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_010930454.1|1584231_1585902_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_010930455.1|1586025_1587075_-	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811187.1|1587396_1588173_+	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930456.1|1588237_1589140_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930457.1|1590433_1591237_+	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930458.1|1593930_1594317_+	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_033446218.1|1594332_1596423_+	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_003811203.1|1596474_1597428_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_010930460.1|1597442_1598330_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930461.1|1598467_1599994_+	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003811209.1|1600092_1600593_+	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_019247170.1|1600916_1602872_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930464.1|1603039_1605124_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930465.1|1605150_1605936_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930466.1|1606791_1607562_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_014486073.1|1607561_1608302_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930468.1|1608343_1609513_+	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_010930469.1|1609544_1611629_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_003811224.1|1611625_1612516_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930470.1|1612512_1613610_+	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_010930471.1|1613632_1614922_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930472.1|1614933_1615959_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930473.1|1615955_1618013_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_023852812.1|1618026_1619202_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_005013747.1|1619283_1620234_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1620292_1621066_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1621058_1622615_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1622611_1623562_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1624888_1625491_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1625730_1626432_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1626425_1627208_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1627392_1628343_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1628441_1629179_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1629368_1630127_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1630173_1631163_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1631340_1632309_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1633848_1634817_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1634825_1635767_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1636240_1637251_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1637241_1638756_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1638752_1640099_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1640101_1641136_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1641185_1642811_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1643363_1644314_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP013906	Bordetella pertussis strain J276 chromosome, complete genome	4108478	1665105	1705955	4108478	tRNA,transposase	uncultured_Caudovirales_phage(20.0%)	35	NA	NA
WP_005013747.1|1665105_1666056_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1666349_1667072_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1667510_1668698_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1668701_1669052_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1670801_1671773_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1671786_1672500_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1672504_1673422_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1673528_1673825_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1673923_1674874_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930509.1|1676032_1678966_+	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_003810969.1|1678965_1679310_+	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_004568496.1|1679306_1680935_+	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_010930510.1|1680931_1681411_+	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_033446177.1|1681410_1681692_+	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930511.1|1681688_1682015_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_005013747.1|1682170_1683121_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247780.1|1683164_1683707_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930513.1|1683804_1684653_+	hydrolase	NA	NA	NA	NA	NA
WP_010930514.1|1684702_1685152_+|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.2	2.0e-06
WP_010930515.1|1685148_1686150_+	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_010930516.1|1686162_1686957_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930517.1|1687005_1688907_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003810992.1|1688903_1689527_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_003816541.1|1689653_1690778_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930518.1|1691158_1692763_+	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_010930519.1|1692918_1693695_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930520.1|1693779_1694778_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930521.1|1694774_1695548_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_014905945.1|1696532_1697483_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810867.1|1697506_1697971_-	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_010930799.1|1698117_1699326_+	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_010930798.1|1699369_1699807_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930797.1|1699925_1701215_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1703955_1704906_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1705004_1705955_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP013906	Bordetella pertussis strain J276 chromosome, complete genome	4108478	1819546	1874975	4108478	tRNA,transposase	uncultured_Caudovirales_phage(16.67%)	50	NA	NA
WP_005012067.1|1819546_1820497_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930566.1|1822054_1822705_-	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_019247244.1|1822833_1824036_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930568.1|1824113_1826150_+	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_010930569.1|1826402_1826894_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_003812463.1|1827109_1827622_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930570.1|1827639_1828851_+	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812460.1|1828888_1829299_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_003812458.1|1829300_1829624_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812456.1|1829626_1830139_+	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_010930571.1|1830268_1832131_+	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812453.1|1832140_1832482_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_003812452.1|1832481_1832676_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_010930572.1|1832800_1833694_+	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_005013747.1|1833690_1834641_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1834765_1835575_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1835775_1836726_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1837999_1839217_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1840273_1841176_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1841252_1842125_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1842255_1842624_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1842681_1843728_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1843923_1845180_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1845184_1846522_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1846671_1847628_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1847730_1848663_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1848778_1849099_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1849091_1849451_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1849498_1851073_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1851125_1852070_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1852087_1852918_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1852910_1854545_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1854541_1855897_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1856803_1858381_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1858384_1859659_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1859756_1860131_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1861846_1862980_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1863017_1863623_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1863619_1864438_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1864509_1867134_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1867120_1867375_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1867441_1868023_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1868326_1868587_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1868752_1869376_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1869375_1870149_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1870145_1871354_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1871379_1871853_-	RidA family protein	NA	NA	NA	NA	NA
WP_005012067.1|1871926_1872877_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|1872975_1873926_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1874024_1874975_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP013906	Bordetella pertussis strain J276 chromosome, complete genome	4108478	1878036	1925325	4108478	protease,tRNA,transposase	Klosneuvirus(22.22%)	47	NA	NA
WP_010930794.1|1878036_1880919_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1881241_1881667_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1881694_1882843_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1882839_1883346_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1883361_1884648_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1884697_1885993_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1885994_1886633_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1886638_1887796_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1887822_1889178_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1889181_1890252_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1890390_1890627_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1890714_1891821_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1891786_1893091_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1893109_1894009_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930786.1|1894192_1895350_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_023852902.1|1895426_1896722_+	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_003810720.1|1896835_1897375_+	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_006218592.1|1897652_1897865_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_010930784.1|1897884_1899915_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_124740709.1|1899940_1900135_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|1900600_1902883_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_003816708.1|1903292_1903592_-	hypothetical protein	NA	NA	NA	NA	NA
WP_047122784.1|1903876_1904290_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_005013747.1|1904249_1905200_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1905298_1906249_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1906448_1907534_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1907549_1908311_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1908307_1909231_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1909329_1909854_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1909862_1910606_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1910701_1910941_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1910954_1911107_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1911192_1912683_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1912774_1913713_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1913709_1913886_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1913888_1914551_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1916172_1916316_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1916312_1917287_-	membrane protein	NA	NA	NA	NA	NA
WP_162268682.1|1917181_1917436_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1917453_1918404_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1918400_1919675_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1919778_1920972_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1920968_1921622_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1921618_1923055_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1923042_1923402_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1924216_1924357_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1924374_1925325_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP013906	Bordetella pertussis strain J276 chromosome, complete genome	4108478	1946018	1999258	4108478	transposase	Mycobacterium_phage(33.33%)	48	NA	NA
WP_005012067.1|1946018_1946969_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1947621_1948572_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812199.1|1948590_1948938_-	GFA family protein	NA	NA	NA	NA	NA
WP_010930755.1|1948966_1950406_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_010930754.1|1950424_1950820_-	VOC family protein	NA	NA	NA	NA	NA
WP_003812191.1|1950994_1951603_+	peptidase S16	NA	NA	NA	NA	NA
WP_010930753.1|1951615_1952434_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_010930752.1|1952385_1953360_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812183.1|1953388_1954450_-	XdhC family protein	NA	NA	NA	NA	NA
WP_010930751.1|1954446_1956663_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_010930750.1|1956676_1957135_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_003812179.1|1957292_1957637_-	exported protein	NA	NA	NA	NA	NA
WP_010930749.1|1957793_1958699_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930748.1|1958785_1959799_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930153.1|1961778_1962795_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019247707.1|1962937_1964290_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_003812172.1|1964464_1964761_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1965898_1966849_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247855.1|1967334_1967511_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812044.1|1968195_1969167_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930746.1|1969170_1970025_+	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_010930745.1|1970043_1970865_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_019247853.1|1970896_1971691_+	amidase	NA	NA	NA	NA	NA
WP_076879628.1|1971739_1972345_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247851.1|1972302_1973136_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930744.1|1973421_1974927_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_003812032.1|1974968_1975751_-	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_003812030.1|1975820_1976267_-	membrane protein	NA	NA	NA	NA	NA
WP_010930743.1|1976263_1977490_-	NnrS family protein	NA	NA	NA	NA	NA
WP_003812026.1|1977482_1977887_-	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_003812024.1|1978046_1978349_+	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
WP_005013747.1|1978345_1979296_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1979517_1980468_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1980566_1981532_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1981669_1982569_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|1985163_1986651_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|1986661_1987858_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|1987930_1989250_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|1989246_1990122_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|1990152_1991301_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|1991318_1991633_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_062810228.1|1991654_1992377_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|1992376_1993195_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|1993199_1993727_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|1993732_1994989_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|1995347_1996487_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|1996564_1997437_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|1998307_1999258_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP013906	Bordetella pertussis strain J276 chromosome, complete genome	4108478	2135869	2201008	4108478	protease,tRNA,transposase	Lake_Baikal_phage(18.18%)	54	NA	NA
WP_023853569.1|2135869_2137138_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2137708_2137921_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2137938_2138670_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2138704_2139346_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2139338_2140007_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2142219_2142996_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2143017_2144175_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2144171_2144603_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2144599_2145397_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2145416_2145818_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2145884_2146856_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2146921_2148145_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2148372_2149323_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2149446_2151900_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2152088_2153393_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2153497_2154151_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2154153_2155464_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2155642_2156221_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2156332_2156533_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2156878_2157445_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2157528_2157732_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2158038_2158359_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2158400_2158682_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2158756_2160013_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2160395_2160725_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2162295_2163117_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2163116_2164256_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2164262_2165159_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2165173_2167081_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2167440_2170053_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2170105_2172406_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2172402_2173611_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2173872_2174247_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2174243_2175194_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2175292_2177287_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2177346_2178312_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2178301_2181163_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2181165_2181672_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2181776_2182985_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2182986_2183925_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2184086_2184560_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2184556_2185507_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2185617_2186058_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2186186_2187416_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2187454_2188276_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2188329_2189481_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2189572_2190061_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2192611_2195161_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2195231_2197805_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2198070_2198271_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2198302_2198464_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2198521_2198860_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2199008_2199959_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929969.1|2200057_2201008_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP013906	Bordetella pertussis strain J276 chromosome, complete genome	4108478	2216978	2274733	4108478	tRNA,transposase	Moraxella_phage(40.0%)	59	NA	NA
WP_010929632.1|2216978_2217995_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2218092_2219133_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2219267_2220560_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2221919_2222303_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2222320_2222908_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_010930048.1|2222945_2223896_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930801.1|2223994_2224555_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930802.1|2224551_2225097_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003818661.1|2225292_2226321_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930803.1|2226361_2227702_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818658.1|2227810_2228815_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930804.1|2228921_2231522_+	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_005012067.1|2231620_2232571_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930522.1|2232669_2233620_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809939.1|2233616_2233889_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930805.1|2234147_2236859_-	autotransporter BapA	NA	NA	NA	NA	NA
WP_010930806.1|2237513_2238971_+	cardiolipin synthetase	NA	NA	NA	NA	NA
WP_003820087.1|2238967_2239318_-	STAS domain-containing protein	NA	NA	NA	NA	NA
WP_003809933.1|2239461_2239890_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_010930807.1|2239973_2241137_+	alanine racemase	NA	NA	NA	NA	NA
WP_023995091.1|2241133_2243575_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930809.1|2243659_2245681_+	SpoIIE family protein phosphatase	NA	NA	NA	NA	NA
WP_014905553.1|2245677_2246865_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023995090.1|2248191_2248392_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930812.1|2248428_2249127_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809919.1|2249301_2249904_+	RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_010930813.1|2249924_2251727_-	type III secretion system outer membrane ring subunit SctC	NA	NA	NA	NA	NA
WP_010930814.1|2251717_2252116_-	type III secretion system chaperone	NA	NA	NA	NA	NA
WP_010930815.1|2252112_2253162_-	type III secretion system export apparatus subunit SctU	NA	NA	NA	NA	NA
WP_010930816.1|2253158_2253959_-	type III secretion system export apparatus protein SctT	NA	NA	NA	NA	NA
WP_010930817.1|2253970_2254237_-	type III secretion system export apparatus subunit SctS	NA	NA	NA	NA	NA
WP_004568087.1|2254242_2254914_-	type III secretion system export apparatus protein SctR	NA	NA	NA	NA	NA
WP_010930818.1|2254910_2255990_-	type III secretion system cytoplasmic ring protein SctQ	NA	NA	NA	NA	NA
WP_010930819.1|2255986_2256535_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820063.1|2256531_2257041_-	type III secretion system central stalk protein BscO	NA	NA	NA	NA	NA
WP_003820061.1|2257040_2258375_-	EscN/YscN/HrcN family type III secretion system ATPase	NA	NA	NA	NA	NA
WP_010930820.1|2258379_2259018_-	HrpE/YscL family type III secretion apparatus protein	NA	NA	NA	NA	NA
WP_003820059.1|2258987_2259650_-	type III secretion system sorting platform protein BscK	NA	NA	NA	NA	NA
WP_010930821.1|2259642_2260467_-	type III secretion inner membrane ring lipoprotein SctJ	NA	NA	NA	NA	NA
WP_019248576.1|2260463_2260871_-	type III secretion system inner rod subunit SctI	NA	NA	NA	NA	NA
WP_010930823.1|2260867_2261389_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809889.1|2261393_2261855_-	CesD/SycD/LcrH family type III secretion system chaperone	NA	NA	NA	NA	NA
WP_010930824.1|2261878_2263087_-	type III secretion system translocon subunit BopB	NA	NA	NA	NA	NA
WP_010930825.1|2263110_2264052_-	type III secretion system translocon subunit SctB	NA	NA	NA	NA	NA
WP_004568102.1|2264099_2264585_-	CesD/SycD/LcrH family type III secretion system chaperone	NA	NA	NA	NA	NA
WP_010930826.1|2264600_2264876_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820049.1|2264897_2265515_-	type III secretion system needle tip complex Bsp22	NA	NA	NA	NA	NA
WP_010930827.1|2265678_2266776_+	type III secretion system gatekeeper subunit SctW	NA	NA	NA	NA	NA
WP_010930828.1|2266772_2267150_+	type III secretion chaperone SycN	NA	NA	NA	NA	NA
WP_010930829.1|2267154_2267565_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930830.1|2267561_2267930_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930831.1|2267926_2270026_+	type III secretion system export apparatus subunit SctV	NA	NA	NA	NA	NA
WP_010930832.1|2270022_2271303_+	type III secretion system inner membrane ring subunit SctD	NA	NA	NA	NA	NA
WP_003820040.1|2271343_2271643_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809869.1|2271632_2271899_+	type III secretion protein	NA	NA	NA	NA	NA
WP_010930833.1|2271934_2272390_-	CesT family type III secretion system chaperone	NA	NA	NA	NA	NA
WP_154698385.1|2272572_2272716_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|2272733_2273684_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2273782_2274733_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP013906	Bordetella pertussis strain J276 chromosome, complete genome	4108478	2481252	2539496	4108478	tRNA,transposase	Planktothrix_phage(28.57%)	54	NA	NA
WP_005012067.1|2481252_2482203_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2482682_2483339_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2483353_2485021_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2485023_2485653_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2485864_2486959_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2487103_2487916_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2487919_2489503_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2489673_2490804_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2490990_2492067_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2492148_2492799_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2492813_2494217_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2494500_2495319_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2495315_2496020_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2496919_2498035_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2498068_2498443_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2498465_2499623_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2499635_2499869_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2500503_2503473_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2503487_2503697_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2503848_2504478_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2504474_2506532_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2506588_2507269_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2507265_2507826_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2507832_2508930_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2509082_2509676_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2509672_2510965_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2510978_2511521_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2511530_2512367_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2512400_2513462_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2513503_2514556_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2514571_2514874_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2515015_2515966_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2515983_2516148_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2516144_2517839_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2517835_2518921_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2518968_2519868_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2519878_2520523_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2521544_2524787_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2524797_2525952_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2526178_2527141_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2527239_2528190_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2528288_2529239_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2529248_2529938_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2529997_2530435_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2530480_2531374_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2531421_2532594_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2532590_2533745_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2533941_2534292_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2534281_2534716_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2534732_2535683_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2535830_2536298_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2536278_2537436_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2537501_2538428_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2538545_2539496_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP013906	Bordetella pertussis strain J276 chromosome, complete genome	4108478	2581773	2648273	4108478	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2581773_2582724_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2583093_2583666_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2583668_2584679_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2584671_2585172_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2585182_2585524_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2585592_2586327_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2586343_2586613_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2586635_2587424_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2587470_2588487_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2588703_2590146_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2590324_2591944_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2592064_2593885_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2593963_2595496_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2595529_2597176_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2597245_2598268_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2598285_2599419_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2599421_2600111_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2600110_2600896_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2600939_2601704_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2601742_2603164_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2603229_2603934_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2603981_2604401_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2604413_2604821_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2605004_2605715_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2605841_2606132_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2606149_2606632_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2611137_2612292_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2612597_2613614_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2613860_2614649_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2614715_2615396_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2615392_2616163_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2616261_2617212_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2617267_2618185_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2618195_2619374_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2619393_2620389_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2621977_2622586_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2622573_2623614_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2623631_2624594_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2624590_2625784_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2625780_2626578_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2626603_2627590_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2627608_2629648_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2629849_2630530_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2630543_2631455_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2631451_2632030_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2632168_2633074_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2633081_2636501_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2636488_2639089_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2640044_2640677_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2641070_2641829_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2641825_2643028_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2643215_2644166_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2645073_2646219_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2646205_2646961_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2647077_2647257_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2647322_2648273_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP013906	Bordetella pertussis strain J276 chromosome, complete genome	4108478	2811878	2866395	4108478	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	48	NA	NA
WP_023853639.1|2811878_2812829_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2813157_2813763_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2813816_2815130_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2815204_2815675_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2815674_2816463_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2816473_2818126_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2818213_2819164_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2820325_2820832_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2820828_2821593_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2821608_2821893_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2821957_2822947_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2823118_2824048_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2824019_2824706_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2824739_2825285_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2825329_2826595_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2826591_2827494_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2828675_2829620_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2829714_2831232_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2831273_2832902_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2833009_2833891_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2837003_2837378_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2837402_2837741_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2837784_2839419_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2839457_2840804_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2840911_2842333_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2842402_2842987_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2843089_2844040_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2844174_2845281_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2845291_2846389_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2846533_2847739_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2847745_2848267_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2848263_2848746_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2848751_2849003_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2848983_2849469_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2849604_2853066_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2853083_2853968_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2853977_2854409_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2854655_2855159_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2855236_2856637_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2856711_2857587_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2857583_2858591_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2859058_2859364_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2859454_2860045_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2860235_2861252_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2861443_2863780_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2863862_2864297_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2864395_2865346_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2865444_2866395_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP013906	Bordetella pertussis strain J276 chromosome, complete genome	4108478	2874420	2931206	4108478	protease,transposase	uncultured_Mediterranean_phage(28.57%)	41	NA	NA
WP_005012067.1|2874420_2875371_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2877077_2877344_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2878051_2878390_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2882943_2883546_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2883642_2884932_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2884989_2885721_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2885717_2886521_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2886517_2887606_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2887602_2888532_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2888680_2889826_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2889847_2890798_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2890815_2890974_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2891128_2894950_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2895106_2895775_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2895779_2897453_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2897471_2898791_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2898795_2901111_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2901166_2903335_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2903331_2908512_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2908610_2908925_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2909152_2909398_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2909492_2910011_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2910110_2911316_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2911431_2912829_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2912945_2913524_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2913596_2914988_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2915155_2916106_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2916386_2917007_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2917003_2917417_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2917413_2918457_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2918512_2918701_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2918710_2919475_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2919565_2920222_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2920313_2921072_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2921097_2922699_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2922899_2923904_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2924004_2924268_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2924385_2925162_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2925752_2926703_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2929086_2930199_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2930255_2931206_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP013906	Bordetella pertussis strain J276 chromosome, complete genome	4108478	2961592	3005283	4108478	transposase	Planktothrix_phage(33.33%)	41	NA	NA
WP_005012067.1|2961592_2962543_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2962560_2962710_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2962663_2963560_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2965837_2968063_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2968227_2969316_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2969272_2969926_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2969973_2970771_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2971302_2972253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2972333_2973482_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2973538_2974489_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2974587_2974893_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2974921_2975356_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2975357_2976602_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2976598_2977309_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2977323_2978235_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2978597_2979002_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2978998_2979457_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2979463_2980372_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2980368_2981235_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2981221_2982049_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2982059_2983187_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2984264_2985503_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2985544_2986807_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2986813_2987566_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2987617_2987803_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2988078_2988543_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2988574_2989234_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2989378_2991487_+	AsmA family protein	NA	NA	NA	NA	NA
WP_076879634.1|2991483_2992434_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2992537_2993158_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2993261_2994002_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2995136_2996261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2996306_2996675_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2996916_2997867_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2998902_2999445_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2999642_2999813_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2999830_3000781_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|3000777_3001686_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|3001812_3002649_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3003161_3004271_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3004332_3005283_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP013906	Bordetella pertussis strain J276 chromosome, complete genome	4108478	3385229	3438970	4108478	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3385229_3386180_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3386584_3387229_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3387253_3387838_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3387938_3388556_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3388558_3390274_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3390270_3390579_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3390595_3391213_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3391257_3391560_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3391660_3392515_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3392702_3392927_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3393096_3393369_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3393786_3394194_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3394563_3395358_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3395458_3396694_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3396762_3397779_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3397790_3399167_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3399163_3400360_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3400356_3401895_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3401891_3403151_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3405091_3406042_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3406808_3407903_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3407895_3409230_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3409183_3409867_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3409892_3411056_-	acyl-CoA dehydrogenase C-terminal domain protein	NA	NA	NA	NA	NA
WP_004566224.1|3411052_3412054_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3412053_3412926_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3412922_3413672_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3413668_3414460_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3414456_3415596_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3415871_3416657_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3416690_3417473_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3417476_3417866_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3419005_3419869_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3419904_3420993_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3420989_3421940_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3422293_3425272_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3426198_3427077_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3429025_3429976_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3429972_3430440_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3430482_3431253_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3431273_3432074_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3432084_3433494_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3433588_3434374_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3434613_3435630_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3435737_3436130_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3436267_3436948_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3436952_3437924_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3438019_3438970_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP013906	Bordetella pertussis strain J276 chromosome, complete genome	4108478	3445125	3504423	4108478	tRNA,transposase	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3445125_3446889_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3447000_3447879_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3447991_3448807_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3448810_3449062_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3449146_3450163_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3450493_3450715_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3453075_3453993_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3454490_3455699_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3455778_3457350_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3457467_3458403_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3458591_3459536_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3460103_3465821_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3465826_3466954_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3467009_3467636_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3467907_3468924_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3469019_3469730_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3469726_3470716_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3470811_3472443_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3472445_3473183_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3473338_3474211_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3474560_3475700_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3475696_3476356_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3476427_3477060_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3477089_3477608_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3477618_3478728_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3478774_3479629_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3479630_3480533_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3481755_3482706_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3484460_3485450_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3485625_3486414_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3486410_3487442_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3487460_3488024_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3488079_3489600_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3489863_3490568_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3490575_3491304_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3491418_3491793_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3491835_3493125_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3493121_3494291_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3494287_3495127_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3495186_3496122_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3496134_3497085_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3497183_3498146_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3498177_3498537_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3498661_3499564_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3499565_3501338_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3501372_3502149_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3503472_3504423_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP013906	Bordetella pertussis strain J276 chromosome, complete genome	4108478	3519361	3577434	4108478	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3519361_3520312_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3520440_3521574_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3521617_3522523_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3522525_3524226_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3524222_3525143_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3525150_3526128_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3526186_3527221_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3529195_3529432_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3529558_3530422_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3530510_3531332_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3531411_3532149_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3532145_3533138_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3533290_3533914_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3533958_3535107_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3537430_3538381_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3538721_3539672_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3539770_3540721_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3541017_3541515_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3541557_3543333_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3543340_3544207_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3544213_3544948_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3546117_3546912_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3547201_3547792_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3547825_3549154_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3549228_3550374_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3550485_3551484_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3551446_3551881_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3553397_3554282_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3554278_3555484_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3555480_3556341_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3556453_3558244_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3558284_3558929_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3558950_3559259_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3559424_3560711_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3562144_3563095_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3565046_3566261_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3566366_3567356_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3567352_3567961_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3567973_3568603_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3568599_3569220_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3569251_3570043_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3570894_3571350_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3571368_3572295_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3572348_3573635_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3574565_3575438_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3575434_3576385_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3576483_3577434_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 33
NZ_CP013906	Bordetella pertussis strain J276 chromosome, complete genome	4108478	4007546	4072458	4108478	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4007546_4008032_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4008120_4008258_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4008250_4009231_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4009497_4010307_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4010346_4011027_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4011020_4011479_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4011490_4011853_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4011935_4012619_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4012674_4012983_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4013001_4013316_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4013312_4015787_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4015794_4017186_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4017182_4017368_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4017346_4018048_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4018044_4018866_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4018846_4019971_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4019963_4020983_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4021188_4022079_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4022323_4023115_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4023197_4023572_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4023549_4024959_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4024951_4026334_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4026668_4028273_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4028350_4029322_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4029332_4030259_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4030649_4031600_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4031769_4032996_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4033195_4034062_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4034054_4035017_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4035117_4036068_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4036166_4037117_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4037215_4038166_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4038162_4039656_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4039652_4042760_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4042756_4045825_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4045821_4047072_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4047252_4048005_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4048046_4048691_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4048699_4049680_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4049779_4050523_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4050605_4050953_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4051050_4051893_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4051937_4052825_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4052851_4053040_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4053137_4054595_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4054581_4056108_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4056126_4056594_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4056593_4057616_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4057736_4058477_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4058531_4059632_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4059633_4060824_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4060943_4061960_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4062278_4062950_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4062946_4063855_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4064066_4064714_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4068574_4069642_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4069652_4070462_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023999981.1|4070551_4071325_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4071325_4071490_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4071507_4072458_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
