The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP017717	Nonomuraea sp. ATCC 55076 chromosome, complete genome	13047416	3234337	3294032	13047416	protease,transposase,integrase	Bacillus_phage(50.0%)	52	3279492:3279508	3292420:3292436
WP_080046718.1|3234337_3235459_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_080038674.1|3236769_3237207_-	DUF1905 domain-containing protein	NA	NA	NA	NA	NA
WP_080038675.1|3237215_3237626_-	VOC family protein	NA	NA	NA	NA	NA
WP_080038676.1|3237722_3238175_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_080046729.1|3238318_3239185_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_155127194.1|3239590_3239821_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_080046730.1|3240265_3240919_+	response regulator	NA	NA	NA	NA	NA
WP_155127197.1|3242205_3242514_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080038680.1|3242623_3243316_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_080038681.1|3243629_3243872_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080038682.1|3244037_3245252_-	serine hydrolase	NA	NA	NA	NA	NA
WP_080038683.1|3245397_3246006_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_080038684.1|3246641_3246854_+	hypothetical protein	NA	NA	NA	NA	NA
WP_155127200.1|3247007_3247313_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080038686.1|3248430_3249681_+	bifunctional glycosyltransferase family 2/GtrA family protein	NA	NA	NA	NA	NA
WP_080038687.1|3249688_3251851_+	phospholipid carrier-dependent glycosyltransferase	NA	NA	NA	NA	NA
WP_080038688.1|3251905_3252607_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	37.1	3.7e-36
WP_080038689.1|3252603_3254061_+	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	24.6	7.6e-15
WP_080038690.1|3254147_3255065_+	polyphosphate polymerase domain-containing protein	NA	NA	NA	NA	NA
WP_080038691.1|3255071_3255749_+	DUF4956 domain-containing protein	NA	NA	NA	NA	NA
WP_080038692.1|3255753_3257469_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080038693.1|3257552_3258473_+	dioxygenase	NA	NA	NA	NA	NA
WP_155127203.1|3260408_3261326_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_155127206.1|3261447_3261777_+	hypothetical protein	NA	NA	NA	NA	NA
WP_155127209.1|3261773_3265856_-	hypothetical protein	NA	G1FGA4	Mycobacterium_phage	40.9	8.1e-06
WP_155127212.1|3265866_3266208_-	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_080038696.1|3266868_3267057_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_155127215.1|3267194_3267542_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080038698.1|3268248_3268884_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_080038699.1|3269047_3270205_+	FAD-dependent monooxygenase	NA	NA	NA	NA	NA
WP_155127218.1|3270284_3270941_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080038700.1|3271136_3271487_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080038701.1|3271533_3271761_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080038702.1|3272331_3274752_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080038703.1|3275195_3275543_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080038704.1|3275545_3276157_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080038705.1|3276272_3276953_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_080038706.1|3277328_3278105_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_080038707.1|3278260_3278590_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_080046733.1|3278693_3279071_+	hypothetical protein	NA	NA	NA	NA	NA
3279492:3279508	attL	CACGAAGACGCCGGTCA	NA	NA	NA	NA
WP_155127222.1|3279971_3280292_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155127225.1|3281905_3283513_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080038708.1|3283517_3283838_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_080038709.1|3283834_3284275_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080046735.1|3284271_3285360_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_080038710.1|3285735_3287325_-	NAD(P)-binding protein	NA	A0A1V0SI18	Klosneuvirus	28.9	3.6e-34
WP_080038711.1|3287450_3288071_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_155127228.1|3289516_3290446_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080046736.1|3290954_3291533_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_155127231.1|3292025_3292565_+|protease	matrixin family metalloprotease	protease	NA	NA	NA	NA
3292420:3292436	attR	TGACCGGCGTCTTCGTG	NA	NA	NA	NA
WP_155127234.1|3292612_3293215_+	hypothetical protein	NA	NA	NA	NA	NA
WP_155127236.1|3293204_3294032_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP017717	Nonomuraea sp. ATCC 55076 chromosome, complete genome	13047416	3747974	3773387	13047416	transposase,integrase,tail	uncultured_Caudovirales_phage(33.33%)	23	3741562:3741579	3781700:3781717
3741562:3741579	attL	GTCGTAGCCGACGATCGA	NA	NA	NA	NA
WP_080039106.1|3747974_3748256_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_080039107.1|3748419_3749229_+	hypothetical protein	NA	NA	NA	NA	NA
WP_155127405.1|3749246_3749432_+	hypothetical protein	NA	NA	NA	NA	NA
WP_155127408.1|3750111_3750267_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080039108.1|3750429_3755637_-	relaxase domain-containing protein	NA	NA	NA	NA	NA
WP_080039109.1|3757302_3757848_+	GrpB family protein	NA	NA	NA	NA	NA
WP_080039110.1|3758169_3758460_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080039111.1|3758537_3759023_-	single-stranded DNA-binding protein	NA	A0A2H4JEL4	uncultured_Caudovirales_phage	63.1	1.0e-40
WP_080039112.1|3759114_3759306_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080039113.1|3760018_3760465_+	hypothetical protein	NA	NA	NA	NA	NA
WP_155129681.1|3760504_3760876_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_080039115.1|3761157_3761631_-|tail	lamin tail domain-containing protein	tail	NA	NA	NA	NA
WP_155127411.1|3761833_3761983_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080039116.1|3762284_3764552_+	hypothetical protein	NA	NA	NA	NA	NA
WP_155127414.1|3764912_3765329_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080039118.1|3765325_3767623_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_155127361.1|3767702_3769163_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	38.7	1.5e-34
WP_155127417.1|3769557_3770931_+	hypothetical protein	NA	NA	NA	NA	NA
WP_155127420.1|3771052_3771208_+	hypothetical protein	NA	NA	NA	NA	NA
WP_155127423.1|3771204_3771585_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080046777.1|3771434_3771980_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_080039121.1|3771688_3772141_+|integrase	site-specific integrase	integrase	A0A1U9WS15	Gordonia_phage	44.4	2.9e-05
WP_080046778.1|3772367_3773387_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
3781700:3781717	attR	GTCGTAGCCGACGATCGA	NA	NA	NA	NA
>prophage 3
NZ_CP017717	Nonomuraea sp. ATCC 55076 chromosome, complete genome	13047416	3845834	3918621	13047416	transposase	uncultured_virus(37.5%)	58	NA	NA
WP_155129687.1|3845834_3847340_-|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
WP_080039173.1|3848429_3848723_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080039174.1|3848927_3849629_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_080039175.1|3850514_3851144_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_155127489.1|3853618_3855073_-|transposase	ISL3 family transposase	transposase	A9YX10	Burkholderia_phage	27.2	9.6e-10
WP_080039177.1|3855589_3856288_+	hypothetical protein	NA	NA	NA	NA	NA
WP_155129687.1|3856421_3857927_+|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
WP_155127492.1|3858106_3858742_+	hypothetical protein	NA	A0A218MNI5	uncultured_virus	38.6	1.9e-34
WP_080039179.1|3859048_3860146_-	DUF4192 domain-containing protein	NA	NA	NA	NA	NA
WP_080039180.1|3860193_3860802_-	VWA domain-containing protein	NA	A0A222YU51	Streptomyces_phage	37.2	1.7e-21
WP_080039181.1|3860829_3861510_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080039182.1|3861551_3862433_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080039183.1|3862533_3863004_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080046781.1|3863045_3864161_-	DUF932 domain-containing protein	NA	A0A140G6E9	Arthrobacter_phage	49.6	1.8e-96
WP_080039184.1|3864227_3865076_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080039185.1|3865217_3865538_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080039186.1|3865621_3867361_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080039187.1|3867510_3867972_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155127495.1|3869478_3873135_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_080039189.1|3875123_3876113_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_155127498.1|3876143_3877187_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_080039191.1|3877221_3878802_-	bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase	NA	NA	NA	NA	NA
WP_080039192.1|3878798_3880682_-	acyl-CoA synthetase	NA	NA	NA	NA	NA
WP_080046782.1|3880719_3881832_-	2,3-dihydroxybiphenyl 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_080039193.1|3881845_3882784_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_155129690.1|3882942_3883653_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_080039195.1|3883628_3884480_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080046783.1|3884548_3885445_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_080039196.1|3885900_3886773_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080039197.1|3886769_3887648_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080039198.1|3887853_3888873_+	phosphotransferase	NA	NA	NA	NA	NA
WP_080039199.1|3889086_3890076_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080039200.1|3890250_3890910_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080039201.1|3891083_3891521_-	STAS domain-containing protein	NA	NA	NA	NA	NA
WP_080046784.1|3891744_3893196_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_080039202.1|3893474_3893741_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080039203.1|3893823_3894003_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155127501.1|3893999_3894962_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155127504.1|3895173_3896325_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080039206.1|3896321_3897371_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_080039207.1|3897571_3898477_-	phosphotransferase	NA	NA	NA	NA	NA
WP_080039208.1|3898623_3898944_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080039209.1|3899295_3900147_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080039210.1|3900161_3900455_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080039211.1|3900519_3901755_-	helix-turn-helix domain-containing protein	NA	A0A2H5BLG8	Streptomyces_phage	24.1	1.2e-05
WP_155127507.1|3901887_3902763_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080039213.1|3902928_3903480_+	flavoprotein	NA	NA	NA	NA	NA
WP_080039214.1|3904072_3904984_-	phosphotransferase	NA	NA	NA	NA	NA
WP_080039215.1|3904980_3905457_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155127510.1|3905859_3906015_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080039217.1|3906247_3906541_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155129693.1|3908527_3909124_+	YdcF family protein	NA	NA	NA	NA	NA
WP_080039220.1|3909065_3909905_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080039221.1|3911094_3912327_+	MFS transporter	NA	NA	NA	NA	NA
WP_080039222.1|3912604_3913132_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080039223.1|3913348_3913951_-	hypothetical protein	NA	A0A218MNI5	uncultured_virus	31.9	3.0e-18
WP_080039224.1|3915542_3916853_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	68.2	1.5e-09
WP_155127513.1|3917091_3918621_-|transposase	ISL3 family transposase	transposase	A9YX10	Burkholderia_phage	23.7	8.8e-06
>prophage 4
NZ_CP017717	Nonomuraea sp. ATCC 55076 chromosome, complete genome	13047416	3958977	4019805	13047416	transposase	Streptomyces_phage(22.22%)	54	NA	NA
WP_080039253.1|3958977_3960339_+|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
WP_080039254.1|3960418_3961117_+	hypothetical protein	NA	NA	NA	NA	NA
WP_155127540.1|3961201_3962320_-	NlpC/P60 family protein	NA	A0A1J0GW44	Streptomyces_phage	38.4	7.6e-23
WP_155127543.1|3962430_3963351_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080039257.1|3963428_3964058_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_080039258.1|3964096_3965209_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080039259.1|3965354_3965747_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080046791.1|3965872_3966082_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_080039260.1|3966230_3967409_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_080039261.1|3967485_3967860_+	BlaI/MecI/CopY family transcriptional regulator	NA	NA	NA	NA	NA
WP_080039262.1|3967856_3968807_+	M56 family metallopeptidase	NA	NA	NA	NA	NA
WP_155127546.1|3968849_3969728_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080039264.1|3969851_3970121_+	metal-sensitive transcriptional regulator	NA	NA	NA	NA	NA
WP_080039265.1|3970191_3971574_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_080039266.1|3971648_3972215_+	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_080039267.1|3972224_3972443_-	metal-sensitive transcriptional regulator	NA	NA	NA	NA	NA
WP_080039268.1|3972439_3973027_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_080039269.1|3973308_3973812_+	DUF2269 domain-containing protein	NA	NA	NA	NA	NA
WP_155127549.1|3974649_3975936_+	MFS transporter	NA	NA	NA	NA	NA
WP_080039271.1|3976024_3977446_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	34.1	4.0e-53
WP_080039272.1|3977472_3977961_+	universal stress protein	NA	NA	NA	NA	NA
WP_080046792.1|3978186_3979161_+	hydrolase	NA	B5LJD6	Mycobacterium_phage	47.5	2.6e-19
WP_155127552.1|3979887_3980493_-	DUF305 domain-containing protein	NA	NA	NA	NA	NA
WP_080039273.1|3981193_3984244_+	DEAD/DEAH box helicase	NA	Q6J7X8	Actinoplanes_phage	27.6	1.8e-10
WP_155129699.1|3985539_3985836_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_080039274.1|3985974_3986598_-	CHAP domain-containing protein	NA	NA	NA	NA	NA
WP_080039275.1|3987039_3987672_-	CHAP domain-containing protein	NA	A0A2H5BLQ0	Streptomyces_phage	33.5	3.4e-12
WP_155129699.1|3988250_3988547_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_080039276.1|3989878_3991441_-|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
WP_080039277.1|3991937_3992663_+	hypothetical protein	NA	Q8LTJ6	Lactococcus_phage	35.0	4.3e-19
WP_080039278.1|3992725_3993184_-	excalibur calcium-binding domain-containing protein	NA	NA	NA	NA	NA
WP_080039279.1|3993202_3993937_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_080039280.1|3995279_3995744_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080039281.1|3995841_3996363_+	universal stress protein	NA	NA	NA	NA	NA
WP_080039282.1|3996568_3996796_+	DUF2933 domain-containing protein	NA	NA	NA	NA	NA
WP_080039283.1|3996792_3999510_+	heavy metal translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	35.1	2.4e-83
WP_080039284.1|3999764_4000877_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_155129702.1|4000904_4002041_+	DegT/DnrJ/EryC1/StrS aminotransferase family protein	NA	NA	NA	NA	NA
WP_080039286.1|4002401_4002827_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155127555.1|4002814_4003267_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080039288.1|4003263_4003911_-	isoprenylcysteine carboxylmethyltransferase family protein	NA	NA	NA	NA	NA
WP_080039289.1|4004302_4005655_+	phenylacetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_080039290.1|4005889_4006843_-	M56 family metallopeptidase	NA	NA	NA	NA	NA
WP_080039291.1|4006839_4007214_-	BlaI/MecI/CopY family transcriptional regulator	NA	NA	NA	NA	NA
WP_155127558.1|4007425_4007596_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080039292.1|4007898_4010256_+	heavy metal translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	32.7	2.5e-84
WP_155127561.1|4010582_4010969_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080039294.1|4011061_4012621_+	multicopper oxidase family protein	NA	NA	NA	NA	NA
WP_080039295.1|4013295_4013631_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080039296.1|4013620_4014445_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_080039297.1|4014441_4015572_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_080039298.1|4015568_4016408_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	43.4	2.7e-41
WP_080039299.1|4017014_4018124_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_080039300.1|4018224_4019805_+|transposase	IS1182 family transposase	transposase	NA	NA	NA	NA
