assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002056725.1_ASM205672v1	NZ_CP020121	Comamonas kerstersii strain 8943 chromosome, complete genome	1	42157-42227	1	CRISPRCasFinder	no	PD-DExK	PD-DExK,RT,DEDDh,DinG,cas3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,csa3,WYL	Unclear	AATTTCCGAGACACTGTCTGGGA	23	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,RT,DEDDh,DinG,cas3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,csa3,WYL	NA,NA	NA|275aa|up_9|NZ_CP020121.1_32163_32988_-	pfam06067, DUF932, Domain of unknown function (DUF932)	NA|165aa|up_8|NZ_CP020121.1_33590_34085_+	pfam08937, DUF1863, MTH538 TIR-like domain (DUF1863)	NA|540aa|up_7|NZ_CP020121.1_34115_35735_+	cd07199, Pat17_PNPLA8_PNPLA9_like, Patatin-like phospholipase; includes PNPLA8, PNPLA9, and Pat17	NA|383aa|up_6|NZ_CP020121.1_35816_36965_+	pfam13676, TIR_2, TIR domain	NA|193aa|up_5|NZ_CP020121.1_36961_37540_+	pfam18180, LD_cluster3, SLOG cluster3 family	NA|221aa|up_4|NZ_CP020121.1_37565_38228_-	cd10035, UDG_like, uncharacterized family of the uracil-DNA glycosylase superfamily	NA|381aa|up_3|NZ_CP020121.1_38224_39367_-	pfam18722, MazG_C, MazG C-terminal domain	NA|209aa|up_2|NZ_CP020121.1_39363_39990_-	pfam18753, Nmad2, Nucleotide modification associated domain 2	NA|156aa|up_1|NZ_CP020121.1_39989_40457_-	pfam08937, DUF1863, MTH538 TIR-like domain (DUF1863)	NA|170aa|up_0|NZ_CP020121.1_40545_41055_-	PRK00024, PRK00024, DNA repair protein RadC	NA|400aa|down_0|NZ_CP020121.1_42550_43750_-	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain	NA|518aa|down_1|NZ_CP020121.1_43980_45534_-	pfam05681, Fumerase, Fumarate hydratase (Fumerase)	NA|484aa|down_2|NZ_CP020121.1_45722_47174_+	PRK01642, cls, cardiolipin synthetase; Reviewed	NA|466aa|down_3|NZ_CP020121.1_47318_48716_+	PRK00485, fumC, fumarate hydratase; Reviewed	NA|420aa|down_4|NZ_CP020121.1_48910_50170_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|634aa|down_5|NZ_CP020121.1_50563_52465_-	PRK10788, PRK10788, periplasmic folding chaperone; Provisional	NA|91aa|down_6|NZ_CP020121.1_53057_53330_-	cd13831, HU, histone-like DNA-binding protein HU	NA|189aa|down_7|NZ_CP020121.1_53639_54206_-	PRK10832, PRK10832, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA|648aa|down_8|NZ_CP020121.1_54269_56213_-	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|361aa|down_9|NZ_CP020121.1_56414_57497_+	pfam10093, EarP, Elongation-Factor P (EF-P) rhamnosyltransferase EarP
GCF_002056725.1_ASM205672v1	NZ_CP020121	Comamonas kerstersii strain 8943 chromosome, complete genome	2	1910795-1914998	2,1,1,2,3	CRISPRCasFinder,CRT,PILER-CR,PILER-CR,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	PD-DExK,RT,DEDDh,DinG,cas3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,csa3,WYL	Type I-E	GGGCCTATCCCCGCGTGTGCGGGGCAACC,GGCCTATCCCCGCGTGTGCGGGGCAACC,GGCCTATCCCCGCGTGTGCGGGGCAACC,GGGCCTATCCCCGCGTGTGCGGGGCAACC,GGGCCTATCCCCGCGTGTGCGGGGCAACC	29,28,28,29,29	0	0	NA	NA	NA:NA:NA:NA:NA	68,68,65,65,65	68	TypeI-E	PD-DExK,RT,DEDDh,DinG,cas3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,csa3,WYL	NA|61aa|up_8|NZ_CP020121.1_1904321_1904504_-,NA	NA|213aa|up_9|NZ_CP020121.1_1903648_1904287_-	pfam04299, FMN_bind_2, Putative FMN-binding domain	NA|61aa|up_8|NZ_CP020121.1_1904321_1904504_-	NA	NA|86aa|up_7|NZ_CP020121.1_1904572_1904830_-	pfam07866, DUF1653, Protein of unknown function (DUF1653)	NA|424aa|up_6|NZ_CP020121.1_1904993_1906265_+	COG0144, Sun, tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]	NA|242aa|up_5|NZ_CP020121.1_1906363_1907089_+	pfam02586, SRAP, SOS response associated peptidase (SRAP)	NA|335aa|up_4|NZ_CP020121.1_1907107_1908112_-	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|158aa|up_3|NZ_CP020121.1_1908260_1908734_+	pfam06094, GGACT, Gamma-glutamyl cyclotransferase, AIG2-like	NA|95aa|up_2|NZ_CP020121.1_1908852_1909137_-	COG3042, Hlx, Putative hemolysin [General function prediction only]	NA|276aa|up_1|NZ_CP020121.1_1909183_1910011_-	cd07331, M48C_Oma1_like, Peptidase M48C, integral membrane endopeptidase	NA|125aa|up_0|NZ_CP020121.1_1910134_1910509_-	cd00298, ACD_sHsps_p23-like, This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins	cas2|104aa|down_0|NZ_CP020121.1_1915041_1915353_-	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	cas1|298aa|down_1|NZ_CP020121.1_1915324_1916218_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|259aa|down_2|NZ_CP020121.1_1916228_1917005_-	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas5|249aa|down_3|NZ_CP020121.1_1917001_1917748_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|395aa|down_4|NZ_CP020121.1_1917749_1918934_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|184aa|down_5|NZ_CP020121.1_1919024_1919576_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|547aa|down_6|NZ_CP020121.1_1919568_1921209_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|894aa|down_7|NZ_CP020121.1_1921272_1923954_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|1350aa|down_8|NZ_CP020121.1_1924566_1928616_-	COG2911, COG2911, Uncharacterized protein conserved in bacteria [Function unknown]	NA|619aa|down_9|NZ_CP020121.1_1928620_1930477_-	COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane]
GCF_002056725.1_ASM205672v1	NZ_CP020121	Comamonas kerstersii strain 8943 chromosome, complete genome	3	2979136-2979311	4	PILER-CR	no		PD-DExK,RT,DEDDh,DinG,cas3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,csa3,WYL	Orphan	GCAGACTTCTTGGCTGCAGCCTTTTTC	27	0	0	NA	NA	NA	2	2	Orphan	PD-DExK,RT,DEDDh,DinG,cas3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,csa3,WYL	NA|77aa|up_3|NZ_CP020121.1_2975904_2976135_-,NA|96aa|down_9|NZ_CP020121.1_2992857_2993145_+	NA|383aa|up_9|NZ_CP020121.1_2969660_2970809_+	pfam02595, Gly_kinase, Glycerate kinase family	NA|261aa|up_8|NZ_CP020121.1_2970907_2971690_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|414aa|up_7|NZ_CP020121.1_2971686_2972928_-	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily	NA|284aa|up_6|NZ_CP020121.1_2973015_2973867_-	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters	NA|365aa|up_5|NZ_CP020121.1_2973863_2974958_-	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|187aa|up_4|NZ_CP020121.1_2974954_2975515_-	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|77aa|up_3|NZ_CP020121.1_2975904_2976135_-	NA	NA|496aa|up_2|NZ_CP020121.1_2976328_2977816_-	PRK11712, PRK11712, ribonuclease G; Provisional	NA|205aa|up_1|NZ_CP020121.1_2977862_2978477_-	PRK01839, PRK01839, septum formation inhibitor Maf	NA|156aa|up_0|NZ_CP020121.1_2978659_2979127_-	PRK00103, PRK00103, rRNA large subunit methyltransferase; Provisional	NA|334aa|down_0|NZ_CP020121.1_2979998_2981000_-	PRK05330, PRK05330, oxygen-dependent coproporphyrinogen oxidase	NA|429aa|down_1|NZ_CP020121.1_2980950_2982237_-	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional	NA|240aa|down_2|NZ_CP020121.1_2982233_2982953_-	PRK00110, PRK00110, YebC/PmpR family DNA-binding transcriptional regulator	NA|504aa|down_3|NZ_CP020121.1_2983034_2984546_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|289aa|down_4|NZ_CP020121.1_2984616_2985483_+	PRK06142, PRK06142, crotonase/enoyl-CoA hydratase family protein	NA|211aa|down_5|NZ_CP020121.1_2985706_2986339_+	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed	NA|305aa|down_6|NZ_CP020121.1_2986471_2987386_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|807aa|down_7|NZ_CP020121.1_2987782_2990203_+	PRK09776, PRK09776, putative diguanylate cyclase; Provisional	NA|826aa|down_8|NZ_CP020121.1_2990221_2992699_-	PRK01254, PRK01254, YgiQ family radical SAM protein	NA|96aa|down_9|NZ_CP020121.1_2992857_2993145_+	NA
GCF_002056725.1_ASM205672v1	NZ_CP020121	Comamonas kerstersii strain 8943 chromosome, complete genome	4	3152653-3152771	3	CRISPRCasFinder	no		PD-DExK,RT,DEDDh,DinG,cas3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,csa3,WYL	Orphan	CCTTGGGCGCTTCTGGCTCAGGCTGCGCGGGCTGCTGC	38	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,RT,DEDDh,DinG,cas3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,csa3,WYL	NA|112aa|up_9|NZ_CP020121.1_3148078_3148414_-,NA|150aa|up_8|NZ_CP020121.1_3148470_3148920_-,NA|180aa|up_7|NZ_CP020121.1_3148932_3149472_-,NA|127aa|up_1|NZ_CP020121.1_3151843_3152224_-,NA|139aa|up_0|NZ_CP020121.1_3152227_3152644_-,NA|331aa|down_0|NZ_CP020121.1_3152846_3153839_-,NA|235aa|down_1|NZ_CP020121.1_3153854_3154559_-,NA|101aa|down_3|NZ_CP020121.1_3155352_3155655_-,NA|75aa|down_8|NZ_CP020121.1_3159970_3160195_+,NA|119aa|down_9|NZ_CP020121.1_3160589_3160946_-	NA|112aa|up_9|NZ_CP020121.1_3148078_3148414_-	NA	NA|150aa|up_8|NZ_CP020121.1_3148470_3148920_-	NA	NA|180aa|up_7|NZ_CP020121.1_3148932_3149472_-	NA	NA|110aa|up_6|NZ_CP020121.1_3149570_3149900_-	pfam08809, DUF1799, Phage related hypothetical protein (DUF1799)	NA|111aa|up_5|NZ_CP020121.1_3149899_3150232_-	pfam08748, Phage_TAC_4, Phage tail assembly chaperone	NA|218aa|up_4|NZ_CP020121.1_3150320_3150974_-	pfam08813, Phage_tail_3, Phage tail tube protein, TTP	NA|133aa|up_3|NZ_CP020121.1_3151053_3151452_-	pfam13554, DUF4128, Bacteriophage related domain of unknown function	NA|132aa|up_2|NZ_CP020121.1_3151448_3151844_-	pfam04883, HK97-gp10_like, Bacteriophage HK97-gp10, putative tail-component	NA|127aa|up_1|NZ_CP020121.1_3151843_3152224_-	NA	NA|139aa|up_0|NZ_CP020121.1_3152227_3152644_-	NA	NA|331aa|down_0|NZ_CP020121.1_3152846_3153839_-	NA	NA|235aa|down_1|NZ_CP020121.1_3153854_3154559_-	NA	NA|171aa|down_2|NZ_CP020121.1_3154728_3155241_-	COG3617, COG3617, Prophage antirepressor [Transcription]	NA|101aa|down_3|NZ_CP020121.1_3155352_3155655_-	NA	NA|370aa|down_4|NZ_CP020121.1_3155668_3156778_-	pfam04233, Phage_Mu_F, Phage Mu protein F like protein	NA|446aa|down_5|NZ_CP020121.1_3156777_3158115_-	pfam13264, DUF4055, Domain of unknown function (DUF4055)	NA|425aa|down_6|NZ_CP020121.1_3158163_3159438_-	pfam03237, Terminase_6, Terminase-like family	NA|166aa|down_7|NZ_CP020121.1_3159424_3159922_-	pfam02796, HTH_7, Helix-turn-helix domain of resolvase	NA|75aa|down_8|NZ_CP020121.1_3159970_3160195_+	NA	NA|119aa|down_9|NZ_CP020121.1_3160589_3160946_-	NA
GCF_002056725.1_ASM205672v1	NZ_CP020121	Comamonas kerstersii strain 8943 chromosome, complete genome	5	3245905-3246025	4	CRISPRCasFinder	no	DEDDh	PD-DExK,RT,DEDDh,DinG,cas3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,csa3,WYL	Unclear	GGGAGGGTGAGGGTGGGGGCCGCCAGAAGAGGAAGACG	38	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,RT,DEDDh,DinG,cas3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,csa3,WYL	NA|101aa|up_3|NZ_CP020121.1_3239939_3240242_+,NA|273aa|up_0|NZ_CP020121.1_3245023_3245842_+,NA|115aa|down_0|NZ_CP020121.1_3246386_3246731_-,NA|405aa|down_2|NZ_CP020121.1_3248112_3249327_-,NA|415aa|down_5|NZ_CP020121.1_3252999_3254244_-	NA|686aa|up_9|NZ_CP020121.1_3232108_3234166_-	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter	NA|417aa|up_8|NZ_CP020121.1_3234374_3235625_-	PRK07050, PRK07050, cystathionine beta-lyase; Provisional	NA|157aa|up_7|NZ_CP020121.1_3235746_3236217_+	COG2947, COG2947, Uncharacterized conserved protein [Function unknown]	NA|245aa|up_6|NZ_CP020121.1_3236249_3236984_+	PTZ00146, PTZ00146, fibrillarin; Provisional	NA|642aa|up_5|NZ_CP020121.1_3237097_3239023_+	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|107aa|up_4|NZ_CP020121.1_3239097_3239418_+	pfam10084, DUF2322, Uncharacterized protein conserved in bacteria (DUF2322)	NA|101aa|up_3|NZ_CP020121.1_3239939_3240242_+	NA	NA|682aa|up_2|NZ_CP020121.1_3240238_3242284_+	cd06456, M3A_DCP, Peptidase family M3, dipeptidyl carboxypeptidase (DCP)	DEDDh|483aa|up_1|NZ_CP020121.1_3243456_3244905_-	PRK11779, sbcB, exonuclease I; Provisional	NA|273aa|up_0|NZ_CP020121.1_3245023_3245842_+	NA	NA|115aa|down_0|NZ_CP020121.1_3246386_3246731_-	NA	NA|463aa|down_1|NZ_CP020121.1_3246727_3248116_-	pfam00067, p450, Cytochrome P450	NA|405aa|down_2|NZ_CP020121.1_3248112_3249327_-	NA	NA|474aa|down_3|NZ_CP020121.1_3249323_3250745_-	cd16441, beta_Kdo_transferase_KpsS, beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase KpsS	NA|695aa|down_4|NZ_CP020121.1_3250905_3252990_-	COG3563, KpsC, Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]	NA|415aa|down_5|NZ_CP020121.1_3252999_3254244_-	NA	NA|458aa|down_6|NZ_CP020121.1_3254245_3255619_-	cd02516, CDP-ME_synthetase, CDP-ME synthetase is involved in mevalonate-independent isoprenoid production	NA|374aa|down_7|NZ_CP020121.1_3255626_3256748_-	pfam05704, Caps_synth, Capsular polysaccharide synthesis protein	NA|767aa|down_8|NZ_CP020121.1_3256795_3259096_-	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase	NA|561aa|down_9|NZ_CP020121.1_3259308_3260991_-	COG1596, Wza, Periplasmic protein involved in polysaccharide export, contains    SLBB domain of b-grasp fold [Cell wall/membrane/envelope biogenesis]
