assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002056635.1_ASM205663v1	NZ_CP020116	Escherichia coli strain AR_0104 chromosome, complete genome	1	2013017-2013140	1	CRISPRCasFinder	no	DEDDh	c2c9_V-U4,csa3,cas3,DEDDh,DinG,RT	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,csa3,cas3,DEDDh,DinG,RT	NA,NA|30aa|down_7|NZ_CP020116.1_2022036_2022126_+	NA|471aa|up_9|NZ_CP020116.1_2002469_2003882_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP020116.1_2004438_2004648_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP020116.1_2005103_2005730_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP020116.1_2005750_2007853_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP020116.1_2007865_2008504_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP020116.1_2008567_2009236_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP020116.1_2009232_2010018_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP020116.1_2010021_2010834_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP020116.1_2010845_2012450_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP020116.1_2012575_2012881_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP020116.1_2013454_2014711_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP020116.1_2014751_2016125_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP020116.1_2016339_2016981_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP020116.1_2017020_2018169_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP020116.1_2018459_2019671_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP020116.1_2019783_2020716_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP020116.1_2020712_2021738_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP020116.1_2022036_2022126_+	NA	NA|390aa|down_8|NZ_CP020116.1_2022291_2023461_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP020116.1_2023606_2024188_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_002056635.1_ASM205663v1	NZ_CP020116	Escherichia coli strain AR_0104 chromosome, complete genome	2	2692642-2692733	2	CRISPRCasFinder	no		c2c9_V-U4,csa3,cas3,DEDDh,DinG,RT	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,csa3,cas3,DEDDh,DinG,RT	NA|70aa|up_9|NZ_CP020116.1_2681892_2682102_-,NA	NA|70aa|up_9|NZ_CP020116.1_2681892_2682102_-	NA	NA|1321aa|up_8|NZ_CP020116.1_2682156_2686119_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP020116.1_2686158_2686797_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP020116.1_2687084_2688176_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP020116.1_2688175_2688868_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP020116.1_2688879_2689266_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP020116.1_2689273_2690074_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP020116.1_2690083_2690674_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP020116.1_2690684_2691179_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP020116.1_2691199_2692528_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP020116.1_2693156_2693753_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP020116.1_2693773_2694001_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP020116.1_2694038_2695280_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|307aa|down_3|NZ_CP020116.1_2695814_2696735_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_4|NZ_CP020116.1_2696734_2697040_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_5|NZ_CP020116.1_2697294_2697894_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_6|NZ_CP020116.1_2697890_2700437_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_7|NZ_CP020116.1_2700436_2701609_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_8|NZ_CP020116.1_2701738_2702431_+	PRK10766, PRK10766, two-component system response regulator TorR	NA|343aa|down_9|NZ_CP020116.1_2702403_2703432_-	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional
GCF_002056635.1_ASM205663v1	NZ_CP020116	Escherichia coli strain AR_0104 chromosome, complete genome	3	2892629-2892711	3	CRISPRCasFinder	no		c2c9_V-U4,csa3,cas3,DEDDh,DinG,RT	Orphan	ATCTGCCTGTACGGCAGTGAACT	23	0	0	NA	NA	I-F	1	1	Orphan	c2c9_V-U4,csa3,cas3,DEDDh,DinG,RT	NA,NA	NA|431aa|up_9|NZ_CP020116.1_2877626_2878919_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_CP020116.1_2879009_2880353_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_CP020116.1_2880363_2880975_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1369aa|up_6|NZ_CP020116.1_2881133_2885240_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_CP020116.1_2885374_2885869_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_CP020116.1_2886412_2887378_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_CP020116.1_2887500_2889267_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_CP020116.1_2889267_2890989_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_CP020116.1_2891030_2891735_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP020116.1_2892019_2892238_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|NZ_CP020116.1_2892922_2895199_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP020116.1_2895229_2895550_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_CP020116.1_2895872_2896097_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_CP020116.1_2896169_2898116_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_CP020116.1_2898112_2899228_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|319aa|down_5|NZ_CP020116.1_2899378_2900335_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_CP020116.1_2900331_2901990_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NZ_CP020116.1_2902414_2903110_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|NZ_CP020116.1_2903524_2904424_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|NZ_CP020116.1_2904567_2906220_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCF_002056635.1_ASM205663v1	NZ_CP020116	Escherichia coli strain AR_0104 chromosome, complete genome	4	3780187-3780319	1	PILER-CR	no		c2c9_V-U4,csa3,cas3,DEDDh,DinG,RT	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	c2c9_V-U4,csa3,cas3,DEDDh,DinG,RT	NA,NA|73aa|down_7|NZ_CP020116.1_3788266_3788485_+	NA|95aa|up_9|NZ_CP020116.1_3771588_3771873_-	pfam01845, CcdB, CcdB protein	NA|78aa|up_8|NZ_CP020116.1_3771875_3772109_-	COG5302, COG5302, Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only]	NA|160aa|up_7|NZ_CP020116.1_3772194_3772674_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP020116.1_3772865_3774728_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP020116.1_3774720_3775251_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP020116.1_3775358_3776690_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP020116.1_3776748_3777036_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP020116.1_3777032_3778319_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP020116.1_3778369_3779311_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP020116.1_3779325_3780096_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP020116.1_3780568_3782083_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP020116.1_3782113_3783256_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP020116.1_3783384_3784602_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP020116.1_3784674_3786228_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP020116.1_3786336_3787122_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP020116.1_3787127_3787718_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP020116.1_3787836_3788232_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|73aa|down_7|NZ_CP020116.1_3788266_3788485_+	NA	NA|1074aa|down_8|NZ_CP020116.1_3788492_3791714_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_9|NZ_CP020116.1_3791731_3792880_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit
