assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002056065.1_ASM205606v1	NZ_CP020058	Escherichia coli strain AR_0061 chromosome, complete genome	1	148360-148493	1	CRISPRCasFinder	no		DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	TGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCA	38	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	NA|249aa|up_9|NZ_CP020058.1_137138_137885_+	PRK10063, PRK10063, colanic acid biosynthesis glycosyltransferase WcaE	NA|183aa|up_8|NZ_CP020058.1_137900_138449_+	TIGR04008, WcaF, colanic acid biosynthesis acetyltransferase WcaF	NA|374aa|up_7|NZ_CP020058.1_138474_139596_+	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]	NA|322aa|up_6|NZ_CP020058.1_139598_140564_+	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs	NA|160aa|up_5|NZ_CP020058.1_140566_141046_+	PRK15434, PRK15434, GDP-mannose mannosyl hydrolase	NA|408aa|up_4|NZ_CP020058.1_141042_142266_+	TIGR04007, wcaI, colanic acid biosynthesis glycosyl transferase WcaI	NA|479aa|up_3|NZ_CP020058.1_142268_143705_+	PRK15460, cpsB, mannose-1-phosphate guanyltransferase; Provisional	NA|457aa|up_2|NZ_CP020058.1_143897_145268_+	PRK15414, PRK15414, phosphomannomutase	NA|465aa|up_1|NZ_CP020058.1_145403_146798_+	PRK10124, PRK10124, putative UDP-glucose lipid carrier transferase; Provisional	NA|493aa|up_0|NZ_CP020058.1_146799_148278_+	PRK10459, PRK10459, MOP flippase family protein	NA|427aa|down_0|NZ_CP020058.1_148553_149834_+	TIGR04006, wcaK, colanic acid biosynthesis pyruvyl transferase WcaK	NA|407aa|down_1|NZ_CP020058.1_149830_151051_+	TIGR04005, wcaL, colanic acid biosynthesis glycosyltransferase WcaL	NA|465aa|down_2|NZ_CP020058.1_151061_152456_+	PRK10123, wcaM, putative colanic acid biosynthesis protein; Provisional	NA|298aa|down_3|NZ_CP020058.1_152630_153524_+	PRK10122, PRK10122, UTP--glucose-1-phosphate uridylyltransferase GalF	NA|362aa|down_4|NZ_CP020058.1_153896_154982_+	PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; Provisional	NA|300aa|down_5|NZ_CP020058.1_154981_155881_+	PRK09987, PRK09987, dTDP-4-dehydrorhamnose reductase; Provisional	NA|293aa|down_6|NZ_CP020058.1_155939_156818_+	PRK15480, PRK15480, glucose-1-phosphate thymidylyltransferase RfbA; Provisional	NA|182aa|down_7|NZ_CP020058.1_156822_157368_+	pfam00908, dTDP_sugar_isom, dTDP-4-dehydrorhamnose 3,5-epimerase	NA|419aa|down_8|NZ_CP020058.1_157383_158640_+	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|297aa|down_9|NZ_CP020058.1_158669_159560_+	TIGR01556, dTDP-rhamnosyl_transferase_RfbF, L-rhamnosyltransferase
GCF_002056065.1_ASM205606v1	NZ_CP020058	Escherichia coli strain AR_0061 chromosome, complete genome	2	522695-522818	2	CRISPRCasFinder	no	DEDDh	DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA|30aa|down_7|NZ_CP020058.1_531714_531804_+	NA|471aa|up_9|NZ_CP020058.1_512149_513562_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP020058.1_514118_514328_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP020058.1_514782_515409_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP020058.1_515429_517532_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP020058.1_517544_518183_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP020058.1_518246_518915_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP020058.1_518911_519697_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP020058.1_519700_520513_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP020058.1_520524_522129_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP020058.1_522254_522560_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP020058.1_523132_524389_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP020058.1_524429_525803_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP020058.1_526017_526659_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP020058.1_526698_527847_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP020058.1_528137_529349_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP020058.1_529461_530394_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP020058.1_530390_531416_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP020058.1_531714_531804_+	NA	NA|390aa|down_8|NZ_CP020058.1_531969_533139_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP020058.1_533373_533955_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_002056065.1_ASM205606v1	NZ_CP020058	Escherichia coli strain AR_0061 chromosome, complete genome	3	1161268-1161359	3	CRISPRCasFinder	no		DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|70aa|up_9|NZ_CP020058.1_1150343_1150553_-,NA	NA|70aa|up_9|NZ_CP020058.1_1150343_1150553_-	NA	NA|1321aa|up_8|NZ_CP020058.1_1150607_1154570_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP020058.1_1154609_1155248_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP020058.1_1155535_1156627_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP020058.1_1156626_1157319_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP020058.1_1157330_1157717_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP020058.1_1157724_1158525_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP020058.1_1158534_1159125_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP020058.1_1159135_1159630_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP020058.1_1159650_1160979_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP020058.1_1161782_1162379_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP020058.1_1162399_1162627_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP020058.1_1162664_1163906_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|417aa|down_3|NZ_CP020058.1_1164200_1165451_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP020058.1_1165710_1166631_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP020058.1_1166630_1166936_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP020058.1_1167087_1167687_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP020058.1_1167683_1170230_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP020058.1_1170229_1171402_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP020058.1_1171531_1172224_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_002056065.1_ASM205606v1	NZ_CP020058	Escherichia coli strain AR_0061 chromosome, complete genome	4	1302865-1303070	4,1,1	CRISPRCasFinder,CRT,PILER-CR	no		DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAACG	28,28,29	0	0	NA	NA	I-F:I-F:I-F	3,3,2	3	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	NA|431aa|up_9|NZ_CP020058.1_1287988_1289281_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_CP020058.1_1289371_1290715_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_CP020058.1_1290725_1291337_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1330aa|up_6|NZ_CP020058.1_1291491_1295481_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_CP020058.1_1295615_1296110_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_CP020058.1_1296654_1297620_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_CP020058.1_1297742_1299509_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_CP020058.1_1299509_1301231_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_CP020058.1_1301272_1301977_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP020058.1_1302261_1302480_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|NZ_CP020058.1_1303280_1305557_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP020058.1_1305587_1305908_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_CP020058.1_1306230_1306455_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_CP020058.1_1306527_1308474_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_CP020058.1_1308470_1309586_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|319aa|down_5|NZ_CP020058.1_1309736_1310693_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_CP020058.1_1310689_1312348_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NZ_CP020058.1_1312773_1313469_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|NZ_CP020058.1_1313925_1314825_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|NZ_CP020058.1_1314968_1316621_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCF_002056065.1_ASM205606v1	NZ_CP020058	Escherichia coli strain AR_0061 chromosome, complete genome	5	1422954-1423098	5	CRISPRCasFinder	no		DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	NA|330aa|up_9|NZ_CP020058.1_1410852_1411842_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|up_8|NZ_CP020058.1_1412238_1413147_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|NZ_CP020058.1_1413338_1415360_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|NZ_CP020058.1_1415938_1416616_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|NZ_CP020058.1_1416608_1417364_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|NZ_CP020058.1_1417350_1418505_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|NZ_CP020058.1_1418501_1419542_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|NZ_CP020058.1_1419628_1420918_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|NZ_CP020058.1_1420976_1421453_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|NZ_CP020058.1_1421604_1422888_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP020058.1_1423121_1425383_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP020058.1_1425565_1426999_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP020058.1_1427074_1428127_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP020058.1_1428310_1429264_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP020058.1_1429304_1430300_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP020058.1_1430454_1431273_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP020058.1_1431273_1432332_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP020058.1_1432334_1433024_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP020058.1_1433023_1433797_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP020058.1_1433963_1434113_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_002056065.1_ASM205606v1	NZ_CP020058	Escherichia coli strain AR_0061 chromosome, complete genome	6	1660665-1660759	6	CRISPRCasFinder	no		DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	TTGTAGGCCTGATAAGATGCGTCAA	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	NA|231aa|up_9|NZ_CP020058.1_1652460_1653153_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|NZ_CP020058.1_1653372_1653915_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_CP020058.1_1654385_1655252_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_CP020058.1_1655253_1655466_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_CP020058.1_1655573_1656095_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_CP020058.1_1656130_1657516_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_CP020058.1_1657689_1658184_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_CP020058.1_1658186_1658909_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_CP020058.1_1659026_1659536_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_CP020058.1_1659532_1660600_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_CP020058.1_1660794_1661688_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_CP020058.1_1661684_1662500_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_CP020058.1_1662510_1663770_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_CP020058.1_1663779_1665447_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|NZ_CP020058.1_1665763_1666813_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|NZ_CP020058.1_1666834_1668070_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|NZ_CP020058.1_1668080_1668866_+	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]	NA|382aa|down_7|NZ_CP020058.1_1669093_1670239_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|NZ_CP020058.1_1670260_1671562_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|NZ_CP020058.1_1671618_1672980_-	PRK08044, PRK08044, allantoinase AllB
GCF_002056065.1_ASM205606v1	NZ_CP020058	Escherichia coli strain AR_0061 chromosome, complete genome	7	2182657-2182789	2	PILER-CR	no		DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	NA|126aa|up_9|NZ_CP020058.1_2173360_2173738_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|281aa|up_8|NZ_CP020058.1_2173744_2174587_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|160aa|up_7|NZ_CP020058.1_2174664_2175144_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP020058.1_2175335_2177198_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP020058.1_2177190_2177721_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP020058.1_2177828_2179160_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP020058.1_2179218_2179506_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP020058.1_2179502_2180789_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP020058.1_2180839_2181781_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP020058.1_2181795_2182566_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP020058.1_2183038_2184553_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP020058.1_2184583_2185726_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP020058.1_2185854_2187072_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP020058.1_2187145_2188699_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP020058.1_2188807_2189593_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP020058.1_2189598_2190189_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP020058.1_2190397_2190793_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|NZ_CP020058.1_2191054_2194276_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP020058.1_2194293_2195442_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP020058.1_2195897_2196719_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
GCF_002056065.1_ASM205606v1	NZ_CP020058	Escherichia coli strain AR_0061 chromosome, complete genome	8	3984299-3984510	3,7,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5	DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	2,3,3	3	TypeI-E	DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|47aa|up_1|NZ_CP020058.1_3983008_3983149_-,NA	NA|919aa|up_9|NZ_CP020058.1_3970115_3972872_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|NZ_CP020058.1_3972928_3974230_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|NZ_CP020058.1_3974277_3976512_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|NZ_CP020058.1_3976589_3976838_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|NZ_CP020058.1_3976837_3977173_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|NZ_CP020058.1_3977243_3978035_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|NZ_CP020058.1_3978262_3979900_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|NZ_CP020058.1_3979987_3981286_+	PRK00077, eno, enolase; Provisional	NA|47aa|up_1|NZ_CP020058.1_3983008_3983149_-	NA	NA|224aa|up_0|NZ_CP020058.1_3983287_3983959_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|470aa|down_0|NZ_CP020058.1_3986572_3987982_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_1|NZ_CP020058.1_3987959_3988739_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_2|NZ_CP020058.1_3988735_3989596_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_3|NZ_CP020058.1_3989743_3990319_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_4|NZ_CP020058.1_3990335_3990596_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_5|NZ_CP020058.1_3990586_3991858_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|122aa|down_6|NZ_CP020058.1_3991935_3992301_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_7|NZ_CP020058.1_3992616_3994416_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_8|NZ_CP020058.1_3994415_3996128_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_9|NZ_CP020058.1_3996201_3996936_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_002056065.1_ASM205606v1	NZ_CP020058	Escherichia coli strain AR_0061 chromosome, complete genome	9	4006051-4006445	8,3,4	CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GNGTTCCCCGCGTCAGCGGGGATAAACCG,GTTCCCCGCGTCAGCGGGGATAAACCG	29,29,27	0	0	NA	NA	I-E:I-E:I-E	6,6,6	6	TypeI-E	DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	NA|571aa|up_9|NZ_CP020058.1_3994415_3996128_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|NZ_CP020058.1_3996201_3996936_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|889aa|up_7|NZ_CP020058.1_3997294_3999961_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|503aa|up_6|NZ_CP020058.1_4000375_4001884_+	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cse2gr11|161aa|up_5|NZ_CP020058.1_4001876_4002359_+	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|364aa|up_4|NZ_CP020058.1_4002371_4003463_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|225aa|up_3|NZ_CP020058.1_4003465_4004140_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|200aa|up_2|NZ_CP020058.1_4004126_4004726_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|306aa|up_1|NZ_CP020058.1_4004741_4005659_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|NZ_CP020058.1_4005660_4005945_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP020058.1_4006526_4007564_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP020058.1_4007815_4008724_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP020058.1_4008725_4010153_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP020058.1_4010152_4010758_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP020058.1_4010807_4011131_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP020058.1_4011324_4011636_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP020058.1_4011654_4012365_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP020058.1_4012364_4012844_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP020058.1_4012840_4013890_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP020058.1_4013870_4014632_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_002056065.1_ASM205606v1	NZ_CP020058	Escherichia coli strain AR_0061 chromosome, complete genome	10	4518270-4518387	9	CRISPRCasFinder	no		DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	NA|268aa|up_9|NZ_CP020058.1_4506906_4507710_+	PRK10128, PRK10128, 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional	NA|301aa|up_8|NZ_CP020058.1_4507750_4508653_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_CP020058.1_4508845_4510036_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_CP020058.1_4510032_4511292_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_CP020058.1_4511281_4512910_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP020058.1_4513182_4514541_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP020058.1_4514545_4515622_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP020058.1_4516084_4516735_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP020058.1_4516788_4517043_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP020058.1_4517042_4518173_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP020058.1_4518406_4520692_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_CP020058.1_4521387_4525140_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP020058.1_4525267_4525990_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP020058.1_4526136_4528764_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP020058.1_4528912_4530601_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP020058.1_4530597_4531221_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|down_6|NZ_CP020058.1_4535758_4537408_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_7|NZ_CP020058.1_4537412_4538189_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_8|NZ_CP020058.1_4538262_4539447_-	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|441aa|down_9|NZ_CP020058.1_4539477_4540800_-	pfam02667, SCFA_trans, Short chain fatty acid transporter
GCF_002056065.1_ASM205606v1	NZ_CP020060	Escherichia coli strain AR_0061 plasmid unitig_2, complete sequence	1	30529-30648	1	CRISPRCasFinder	no			Orphan	TGCGTACCCATCCACCTTTCAGTGCGTACCCATCCACCTTTCA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|65aa|up_8|NZ_CP020060.1_22984_23179_+,NA|145aa|up_7|NZ_CP020060.1_24742_25177_-,NA|28aa|up_6|NZ_CP020060.1_25157_25241_+,NA|94aa|up_3|NZ_CP020060.1_27180_27462_+,NA|326aa|up_2|NZ_CP020060.1_27486_28464_+,NA|119aa|up_1|NZ_CP020060.1_28460_28817_-,NA|47aa|down_3|NZ_CP020060.1_33414_33555_-	NA|235aa|up_9|NZ_CP020060.1_19336_20041_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|65aa|up_8|NZ_CP020060.1_22984_23179_+	NA	NA|145aa|up_7|NZ_CP020060.1_24742_25177_-	NA	NA|28aa|up_6|NZ_CP020060.1_25157_25241_+	NA	NA|215aa|up_5|NZ_CP020060.1_25395_26040_-	cd03767, SR_Res_par, Serine recombinase (SR) family, Partitioning (par)-Resolvase subfamily, catalytic domain; Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme	NA|221aa|up_4|NZ_CP020060.1_26420_27083_+	PHA02518, PHA02518, ParA-like protein; Provisional	NA|94aa|up_3|NZ_CP020060.1_27180_27462_+	NA	NA|326aa|up_2|NZ_CP020060.1_27486_28464_+	NA	NA|119aa|up_1|NZ_CP020060.1_28460_28817_-	NA	NA|279aa|up_0|NZ_CP020060.1_29439_30276_-	pfam01051, Rep_3, Initiator Replication protein	NA|84aa|down_0|NZ_CP020060.1_31509_31761_+	PRK02854, PRK02854, primosomal protein DnaT	NA|94aa|down_1|NZ_CP020060.1_31750_32032_+	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]	NA|202aa|down_2|NZ_CP020060.1_32797_33403_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|47aa|down_3|NZ_CP020060.1_33414_33555_-	NA	NA|186aa|down_4|NZ_CP020060.1_33718_34276_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|287aa|down_5|NZ_CP020060.1_34458_35319_+	PRK15442, PRK15442, beta-lactamase TEM; Provisional	NA|264aa|down_6|NZ_CP020060.1_35576_36368_-	cd00739, DHPS, DHPS subgroup of Pterin binding enzymes	NA|82aa|down_7|NZ_CP020060.1_36836_37082_-	pfam04229, GrpB, GrpB protein	NA|288aa|down_8|NZ_CP020060.1_37119_37983_-	PRK08263, PRK08263, short chain dehydrogenase; Provisional	NA|80aa|down_9|NZ_CP020060.1_38128_38368_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters
