assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002055765.1_ASM205576v1	NZ_CP020061	Klebsiella pneumoniae strain AR_0117, complete genome	1	1341315-1341415	1	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,RT,WYL	Orphan	CTTACCGGGCCTACGAACTCGACA	24	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,RT,WYL	NA,NA	NA|242aa|up_9|NZ_CP020061.1_1331139_1331865_+	cd16833, YfiH, protein of unknown function YfiH	NA|527aa|up_8|NZ_CP020061.1_1331877_1333458_-	cd01535, 4RHOD_Repeat_4, Member of the Rhodanese Homology Domain superfamily, repeat 4	NA|201aa|up_7|NZ_CP020061.1_1333463_1334066_-	COG5553, COG5553, Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]	NA|298aa|up_6|NZ_CP020061.1_1334172_1335066_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|362aa|up_5|NZ_CP020061.1_1335210_1336296_+	cd01094, Alkanesulfonate_monoxygenase, Alkanesulfonate monoxygenase is the monoxygenase of a two-component system that catalyzes the conversion of alkanesulfonates to the corresponding aldehyde and sulfite	NA|365aa|up_4|NZ_CP020061.1_1336349_1337444_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|321aa|up_3|NZ_CP020061.1_1337449_1338412_+	cd13558, PBP2_SsuA_like_2, Putative substrate binding domain of sulfonate binding protein, the type 2 periplasmic binding protein fold	NA|346aa|up_2|NZ_CP020061.1_1338408_1339446_+	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]	NA|332aa|up_1|NZ_CP020061.1_1339426_1340422_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|258aa|up_0|NZ_CP020061.1_1340415_1341189_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|691aa|down_0|NZ_CP020061.1_1341611_1343684_-	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor	NA|274aa|down_1|NZ_CP020061.1_1344189_1345011_+	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|342aa|down_2|NZ_CP020061.1_1345007_1346033_+	COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism]	NA|351aa|down_3|NZ_CP020061.1_1346029_1347082_+	pfam01032, FecCD, FecCD transport family	NA|318aa|down_4|NZ_CP020061.1_1347095_1348049_+	cd01146, FhuD, Fe3+-siderophore binding domain FhuD	NA|301aa|down_5|NZ_CP020061.1_1348045_1348948_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|256aa|down_6|NZ_CP020061.1_1349040_1349808_+	cd13624, PBP2_Arg_Lys_His, Substrate binding domain of the arginine-, lysine-, histidine-binding protein ArtJ; the type 2 periplasmic binding protein fold	NA|255aa|down_7|NZ_CP020061.1_1349871_1350636_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|241aa|down_8|NZ_CP020061.1_1350622_1351345_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|205aa|down_9|NZ_CP020061.1_1351616_1352231_+	COG4332, COG4332, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002055765.1_ASM205576v1	NZ_CP020061	Klebsiella pneumoniae strain AR_0117, complete genome	2	1365857-1366250	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2	csa3,cas3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,RT,WYL	Type I-E	GTCTTCCCCACATGCGTGGGGGTGTTTC,GTCTTCCCCACATGCGTGGGGGTGTTTC,GTCTTCCCCACATGCGTGGGGGTGTTTC	28,28,28	0	0	NA	NA	I-E,II-B:I-E,II-B:I-E,II-B	5,6,6	6	TypeI-E	csa3,cas3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,RT,WYL	NA,NA|372aa|down_8|NZ_CP020061.1_1375699_1376815_+	NA|131aa|up_9|NZ_CP020061.1_1352359_1352752_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|411aa|up_8|NZ_CP020061.1_1352788_1354021_-	PRK15403, PRK15403, multidrug efflux MFS transporter MdtM	NA|145aa|up_7|NZ_CP020061.1_1354586_1355021_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|400aa|up_6|NZ_CP020061.1_1355137_1356337_-	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily	NA|386aa|up_5|NZ_CP020061.1_1356631_1357789_+	cd05666, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|717aa|up_4|NZ_CP020061.1_1357831_1359982_-	TIGR01591, Formate_dehydrogenase_subunit_alpha, formate dehydrogenase, alpha subunit, archaeal-type	NA|360aa|up_3|NZ_CP020061.1_1360228_1361308_-	PRK10098, PRK10098, putative dehydrogenase; Provisional	NA|363aa|up_2|NZ_CP020061.1_1361610_1362699_+	COG1840, AfuA, ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|590aa|up_1|NZ_CP020061.1_1362772_1364542_+	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|357aa|up_0|NZ_CP020061.1_1364534_1365605_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	cas3|872aa|down_0|NZ_CP020061.1_1366662_1369278_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|508aa|down_1|NZ_CP020061.1_1369281_1370805_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|189aa|down_2|NZ_CP020061.1_1370816_1371383_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas6e|216aa|down_3|NZ_CP020061.1_1371375_1372023_+	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas7|345aa|down_4|NZ_CP020061.1_1372052_1373087_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|239aa|down_5|NZ_CP020061.1_1373099_1373816_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas1|292aa|down_6|NZ_CP020061.1_1373815_1374691_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|96aa|down_7|NZ_CP020061.1_1374668_1374956_+	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2	NA|372aa|down_8|NZ_CP020061.1_1375699_1376815_+	NA	NA|228aa|down_9|NZ_CP020061.1_1376825_1377509_+	pfam16277, DUF4926, Domain of unknown function (DUF4926)
GCF_002055765.1_ASM205576v1	NZ_CP020061	Klebsiella pneumoniae strain AR_0117, complete genome	3	1375004-1375522	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2	csa3,cas3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,RT,WYL	Type I-E	GTCTTCCCCACGCACGTGGGGGTGTTTC,GTCTTCCCCACGCACGTGGGGGTGTTTC,GTCTTCCCCACGCACGTGGGGGTGTTTC	28,28,28	1	1	1375154-1375186	NZ_CP020061.1_479100-479132	I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B	6,8,7	8	TypeI-E	csa3,cas3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,RT,WYL	NA,NA|372aa|down_0|NZ_CP020061.1_1375699_1376815_+	NA|590aa|up_9|NZ_CP020061.1_1362772_1364542_+	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|357aa|up_8|NZ_CP020061.1_1364534_1365605_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	cas3|872aa|up_7|NZ_CP020061.1_1366662_1369278_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|508aa|up_6|NZ_CP020061.1_1369281_1370805_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|189aa|up_5|NZ_CP020061.1_1370816_1371383_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas6e|216aa|up_4|NZ_CP020061.1_1371375_1372023_+	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas7|345aa|up_3|NZ_CP020061.1_1372052_1373087_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|239aa|up_2|NZ_CP020061.1_1373099_1373816_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas1|292aa|up_1|NZ_CP020061.1_1373815_1374691_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|96aa|up_0|NZ_CP020061.1_1374668_1374956_+	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2	NA|372aa|down_0|NZ_CP020061.1_1375699_1376815_+	NA	NA|228aa|down_1|NZ_CP020061.1_1376825_1377509_+	pfam16277, DUF4926, Domain of unknown function (DUF4926)	NA|124aa|down_2|NZ_CP020061.1_1377569_1377941_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|251aa|down_3|NZ_CP020061.1_1378445_1379198_+	pfam13618, Gluconate_2-dh3, Gluconate 2-dehydrogenase subunit 3	NA|595aa|down_4|NZ_CP020061.1_1379200_1380985_+	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]	NA|446aa|down_5|NZ_CP020061.1_1380998_1382336_+	pfam00034, Cytochrom_C, Cytochrome c	NA|208aa|down_6|NZ_CP020061.1_1382419_1383043_+	PRK13538, PRK13538, cytochrome c biogenesis heme-transporting ATPase CcmA	NA|220aa|down_7|NZ_CP020061.1_1383039_1383699_+	TIGR01190, Heme_exporter_protein_B, heme exporter protein CcmB	NA|246aa|down_8|NZ_CP020061.1_1383748_1384486_+	TIGR01191, Heme_exporter_protein_C, heme exporter protein CcmC	NA|77aa|down_9|NZ_CP020061.1_1384482_1384713_+	COG3114, CcmD, Heme exporter protein D [Intracellular trafficking and secretion]
GCF_002055765.1_ASM205576v1	NZ_CP020061	Klebsiella pneumoniae strain AR_0117, complete genome	4	3521835-3521929	4	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,RT,WYL	Orphan	ACTATGGTTTTTATGGTTTTTATT	24	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,RT,WYL	NA,NA	NA|256aa|up_9|NZ_CP020061.1_3507154_3507922_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|282aa|up_8|NZ_CP020061.1_3508050_3508896_-	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|570aa|up_7|NZ_CP020061.1_3509233_3510943_+	PRK04123, PRK04123, ribulokinase; Provisional	NA|501aa|up_6|NZ_CP020061.1_3510953_3512456_+	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|232aa|up_5|NZ_CP020061.1_3512593_3513289_+	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|786aa|up_4|NZ_CP020061.1_3513464_3515822_+	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|969aa|up_3|NZ_CP020061.1_3516009_3518916_+	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|220aa|up_2|NZ_CP020061.1_3518928_3519588_+	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|180aa|up_1|NZ_CP020061.1_3519662_3520202_-	TIGR03124, citrate_citX, holo-ACP synthase CitX	NA|455aa|up_0|NZ_CP020061.1_3520381_3521746_-	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family	NA|542aa|down_0|NZ_CP020061.1_3522070_3523696_+	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]	NA|233aa|down_1|NZ_CP020061.1_3523685_3524384_+	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]	NA|276aa|down_2|NZ_CP020061.1_3524416_3525244_-	PRK09430, djlA, co-chaperone DjlA	NA|783aa|down_3|NZ_CP020061.1_3525487_3527836_+	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|429aa|down_4|NZ_CP020061.1_3527890_3529177_+	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|330aa|down_5|NZ_CP020061.1_3529182_3530172_+	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|274aa|down_6|NZ_CP020061.1_3530168_3530990_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|126aa|down_7|NZ_CP020061.1_3530992_3531370_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|283aa|down_8|NZ_CP020061.1_3531374_3532223_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|160aa|down_9|NZ_CP020061.1_3532478_3532958_-	PRK10769, folA, type 3 dihydrofolate reductase
