assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002055685.1_ASM205568v1	NZ_CP020052	Proteus mirabilis strain AR_0059, complete genome	1	699273-699354	1	CRISPRCasFinder	no		DEDDh,cas3,c2c9_V-U4,DinG,TnsE_C,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,PD-DExK	Orphan	CTTGTTCAGCTTCAAGTTGCGCTTGACG	28	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,c2c9_V-U4,DinG,TnsE_C,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,PD-DExK	NA,NA|66aa|down_8|NZ_CP020052.1_709767_709965_-	NA|283aa|up_9|NZ_CP020052.1_688055_688904_+	PRK10973, PRK10973, sn-glycerol-3-phosphate ABC transporter permease UgpE	NA|365aa|up_8|NZ_CP020052.1_688905_690000_+	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|251aa|up_7|NZ_CP020052.1_690489_691242_+	cd07334, M48C_loiP_like, Peptidase M48C Ste24p loiP-like, integral membrane protein	NA|159aa|up_6|NZ_CP020052.1_691281_691758_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|396aa|up_5|NZ_CP020052.1_691871_693059_+	cd17474, MFS_YfmO_like, Bacillus subtilis multidrug efflux protein YfmO and similar transporters of the Major Facilitator Superfamily	NA|139aa|up_4|NZ_CP020052.1_693070_693487_+	pfam12568, DUF3749, Acetyltransferase (GNAT) domain	NA|383aa|up_3|NZ_CP020052.1_693462_694611_-	pfam02595, Gly_kinase, Glycerate kinase family	NA|285aa|up_2|NZ_CP020052.1_694705_695560_-	PRK06596, PRK06596, RNA polymerase factor sigma-32; Reviewed	NA|326aa|up_1|NZ_CP020052.1_695901_696879_-	PRK11026, ftsX, cell division ABC transporter subunit FtsX; Provisional	NA|222aa|up_0|NZ_CP020052.1_696871_697537_-	PRK10908, PRK10908, cell division ATP-binding protein FtsE	NA|195aa|down_0|NZ_CP020052.1_699722_700307_+	PRK10909, rsmD, 16S rRNA m(2)G966-methyltransferase; Provisional	NA|98aa|down_1|NZ_CP020052.1_700324_700618_+	PRK10910, PRK10910, DUF1145 family protein	NA|135aa|down_2|NZ_CP020052.1_700681_701086_-	pfam10694, DUF2500, Protein of unknown function (DUF2500)	NA|209aa|down_3|NZ_CP020052.1_701232_701859_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|797aa|down_4|NZ_CP020052.1_702029_704420_+	PRK11033, zntA, zinc/cadmium/mercury/lead-transporting ATPase; Provisional	NA|1045aa|down_5|NZ_CP020052.1_704506_707641_-	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family	NA|380aa|down_6|NZ_CP020052.1_707666_708806_-	NF000247, MexA, MexA family multidrug efflux RND transporter periplasmic adaptor subunit	NA|85aa|down_7|NZ_CP020052.1_709516_709771_-	PRK00299, PRK00299, sulfurtransferase TusA	NA|66aa|down_8|NZ_CP020052.1_709767_709965_-	NA	NA|225aa|down_9|NZ_CP020052.1_709981_710656_+	PRK11212, PRK11212, 7-cyano-7-deazaguanine/7-aminomethyl-7-deazaguanine transporter
GCF_002055685.1_ASM205568v1	NZ_CP020052	Proteus mirabilis strain AR_0059, complete genome	2	989955-990046	2	CRISPRCasFinder	no		DEDDh,cas3,c2c9_V-U4,DinG,TnsE_C,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,PD-DExK	Orphan	TTAGCACTTATTTTTCTAAGCTAT	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,c2c9_V-U4,DinG,TnsE_C,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,PD-DExK	NA|83aa|up_1|NZ_CP020052.1_989384_989633_+,NA	NA|421aa|up_9|NZ_CP020052.1_976949_978212_-	PRK11064, wecC, UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional	NA|377aa|up_8|NZ_CP020052.1_978208_979339_-	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|353aa|up_7|NZ_CP020052.1_979468_980527_-	PRK11638, PRK11638, ECA polysaccharide chain length modulation protein	NA|364aa|up_6|NZ_CP020052.1_980550_981642_-	PRK15119, PRK15119, UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase	NA|420aa|up_5|NZ_CP020052.1_982036_983296_-	PRK09376, rho, transcription termination factor Rho; Provisional	NA|109aa|up_4|NZ_CP020052.1_983857_984184_-	PRK09381, trxA, thioredoxin TrxA	NA|433aa|up_3|NZ_CP020052.1_984303_985602_+	PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional	NA|674aa|up_2|NZ_CP020052.1_987190_989212_-	PRK10919, PRK10919, ATP-dependent DNA helicase Rep; Provisional	NA|83aa|up_1|NZ_CP020052.1_989384_989633_+	NA	NA|90aa|up_0|NZ_CP020052.1_989633_989903_+	pfam15738, YafQ_toxin, Bacterial toxin of type II toxin-antitoxin system, YafQ	NA|492aa|down_0|NZ_CP020052.1_990157_991633_-	PRK05225, PRK05225, ketol-acid reductoisomerase; Validated	NA|296aa|down_1|NZ_CP020052.1_991805_992693_+	PRK11716, PRK11716, HTH-type transcriptional activator IlvY	NA|525aa|down_2|NZ_CP020052.1_992678_994253_-	PRK09224, PRK09224, threonine ammonia-lyase IlvA	NA|617aa|down_3|NZ_CP020052.1_994256_996107_-	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional	NA|309aa|down_4|NZ_CP020052.1_996179_997106_-	PRK06606, PRK06606, branched-chain amino acid transaminase	NA|93aa|down_5|NZ_CP020052.1_997116_997395_-	PRK11152, ilvM, acetolactate synthase 2 small subunit	NA|550aa|down_6|NZ_CP020052.1_997391_999041_-	PRK08978, PRK08978, acetolactate synthase 2 catalytic subunit; Reviewed	NA|34aa|down_7|NZ_CP020052.1_999170_999272_-	PRK10424, PRK10424, ilv operon leader peptide	NA|511aa|down_8|NZ_CP020052.1_999716_1001249_+	PRK09862, PRK09862, ATP-dependent protease	NA|113aa|down_9|NZ_CP020052.1_1001296_1001635_-	PRK11027, PRK11027, hypothetical protein; Provisional
GCF_002055685.1_ASM205568v1	NZ_CP020052	Proteus mirabilis strain AR_0059, complete genome	3	2416009-2416151	3	CRISPRCasFinder	no		DEDDh,cas3,c2c9_V-U4,DinG,TnsE_C,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,PD-DExK	Orphan	CCACCTGTAAAATTGATATCACC	23	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas3,c2c9_V-U4,DinG,TnsE_C,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,PD-DExK	NA,NA|68aa|down_0|NZ_CP020052.1_2417862_2418066_-,NA|74aa|down_6|NZ_CP020052.1_2425257_2425479_-	NA|251aa|up_9|NZ_CP020052.1_2390875_2391628_-	PRK05287, PRK05287, cell division protein ZapD	NA|205aa|up_8|NZ_CP020052.1_2391630_2392245_-	PRK00081, coaE, dephospho-CoA kinase; Reviewed	NA|400aa|up_7|NZ_CP020052.1_2392522_2393722_-	PRK10573, PRK10573, protein transport protein HofC	NA|368aa|up_6|NZ_CP020052.1_2393718_2394822_-	PRK10436, PRK10436, hypothetical protein; Provisional	NA|148aa|up_5|NZ_CP020052.1_2394921_2395365_-	PRK10574, PRK10574, putative major pilin subunit; Provisional	NA|181aa|up_4|NZ_CP020052.1_2395575_2396118_+	PRK11789, PRK11789, 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA|257aa|up_3|NZ_CP020052.1_2396444_2397215_+	PRK09464, pdhR, pyruvate dehydrogenase complex transcriptional repressor PdhR	NA|889aa|up_2|NZ_CP020052.1_2397378_2400045_+	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed	NA|624aa|up_1|NZ_CP020052.1_2400057_2401929_+	PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated	NA|476aa|up_0|NZ_CP020052.1_2402130_2403558_+	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed	NA|68aa|down_0|NZ_CP020052.1_2417862_2418066_-	NA	NA|866aa|down_1|NZ_CP020052.1_2418886_2421484_+	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated	NA|124aa|down_2|NZ_CP020052.1_2421654_2422026_+	PRK05248, PRK05248, hypothetical protein; Provisional	NA|287aa|down_3|NZ_CP020052.1_2422117_2422978_+	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS	NA|208aa|down_4|NZ_CP020052.1_2423146_2423770_+	PRK09304, PRK09304, arginine exporter ArgO	NA|245aa|down_5|NZ_CP020052.1_2423860_2424595_+	PRK11087, PRK11087, oxidative stress defense protein; Provisional	NA|74aa|down_6|NZ_CP020052.1_2425257_2425479_-	NA	NA|300aa|down_7|NZ_CP020052.1_2425681_2426581_-	PRK03635, PRK03635, ArgP/LysG family DNA-binding transcriptional regulator	NA|219aa|down_8|NZ_CP020052.1_2426741_2427398_+	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|417aa|down_9|NZ_CP020052.1_2427753_2429004_+	PRK11790, PRK11790, phosphoglycerate dehydrogenase
GCF_002055685.1_ASM205568v1	NZ_CP020052	Proteus mirabilis strain AR_0059, complete genome	4	2714541-2715243	1,4,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	DEDDh,cas3,c2c9_V-U4,DinG,TnsE_C,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,PD-DExK	Type I-E	GTGTTCCCCGTATGCACGGGGATGAACCG,GTGTTCCCCGTATGCACGGGGATGAACCG,GTGTTCCCCGTATGCACGGGGATGAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	10,11,11	11	TypeI-E	DEDDh,cas3,c2c9_V-U4,DinG,TnsE_C,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,PD-DExK	NA,NA	NA|164aa|up_9|NZ_CP020052.1_2706027_2706519_+	PRK10845, PRK10845, colicin V production protein; Provisional	NA|506aa|up_8|NZ_CP020052.1_2706549_2708067_+	PRK09246, PRK09246, amidophosphoribosyltransferase; Provisional	NA|194aa|up_7|NZ_CP020052.1_2708188_2708770_+	PRK06029, PRK06029, UbiX family flavin prenyltransferase	NA|302aa|up_6|NZ_CP020052.1_2708789_2709695_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|205aa|up_5|NZ_CP020052.1_2709759_2710374_-	PRK13972, PRK13972, GSH-dependent disulfide bond oxidoreductase; Provisional	NA|181aa|up_4|NZ_CP020052.1_2710570_2711113_+	PRK15393, PRK15393, NUDIX hydrolase YfcD; Provisional	NA|349aa|up_3|NZ_CP020052.1_2711109_2712156_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|148aa|up_2|NZ_CP020052.1_2712382_2712826_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|96aa|up_1|NZ_CP020052.1_2712855_2713143_+	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|419aa|up_0|NZ_CP020052.1_2713153_2714410_+	PRK09410, ulaA, PTS system ascorbate-specific transporter subunit IIC; Reviewed	cas3|898aa|down_0|NZ_CP020052.1_2715487_2718181_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|533aa|down_1|NZ_CP020052.1_2718177_2719776_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|200aa|down_2|NZ_CP020052.1_2719750_2720350_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|345aa|down_3|NZ_CP020052.1_2720380_2721415_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|246aa|down_4|NZ_CP020052.1_2721427_2722165_+	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|226aa|down_5|NZ_CP020052.1_2722164_2722842_+	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas1|307aa|down_6|NZ_CP020052.1_2722842_2723763_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|99aa|down_7|NZ_CP020052.1_2723765_2724062_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|408aa|down_8|NZ_CP020052.1_2724683_2725907_+	PRK13340, PRK13340, alanine racemase; Reviewed	NA|800aa|down_9|NZ_CP020052.1_2725984_2728384_-	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family
GCF_002055685.1_ASM205568v1	NZ_CP020052	Proteus mirabilis strain AR_0059, complete genome	5	2724121-2724515	5,2	CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	DEDDh,cas3,c2c9_V-U4,DinG,TnsE_C,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,PD-DExK	Type I-E	GTGTTCCCCGTGTATACGGGGATGAACCG,GTGTTCCCCGTGTATACGGGGATGAACCG	29,29	0	0	NA	NA	I-E:I-E	6,6	6	TypeI-E	DEDDh,cas3,c2c9_V-U4,DinG,TnsE_C,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,PD-DExK	NA,NA	NA|96aa|up_9|NZ_CP020052.1_2712855_2713143_+	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|419aa|up_8|NZ_CP020052.1_2713153_2714410_+	PRK09410, ulaA, PTS system ascorbate-specific transporter subunit IIC; Reviewed	cas3|898aa|up_7|NZ_CP020052.1_2715487_2718181_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|533aa|up_6|NZ_CP020052.1_2718177_2719776_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|200aa|up_5|NZ_CP020052.1_2719750_2720350_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|345aa|up_4|NZ_CP020052.1_2720380_2721415_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|246aa|up_3|NZ_CP020052.1_2721427_2722165_+	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|226aa|up_2|NZ_CP020052.1_2722164_2722842_+	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas1|307aa|up_1|NZ_CP020052.1_2722842_2723763_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|99aa|up_0|NZ_CP020052.1_2723765_2724062_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|408aa|down_0|NZ_CP020052.1_2724683_2725907_+	PRK13340, PRK13340, alanine racemase; Reviewed	NA|800aa|down_1|NZ_CP020052.1_2725984_2728384_-	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family	NA|48aa|down_2|NZ_CP020052.1_2728621_2728765_-	pfam01848, HOK_GEF, Hok/gef family	NA|48aa|down_3|NZ_CP020052.1_2729162_2729306_-	pfam01848, HOK_GEF, Hok/gef family	NA|715aa|down_4|NZ_CP020052.1_2729642_2731787_-	PRK05632, PRK05632, phosphate acetyltransferase; Reviewed	NA|401aa|down_5|NZ_CP020052.1_2731864_2733067_-	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|152aa|down_6|NZ_CP020052.1_2733458_2733914_+	PRK01816, PRK01816, hypothetical protein; Provisional	NA|165aa|down_7|NZ_CP020052.1_2734054_2734549_+	PRK05445, PRK05445, YfbU family protein	NA|221aa|down_8|NZ_CP020052.1_2734583_2735246_+	PRK11587, PRK11587, putative phosphatase; Provisional	NA|610aa|down_9|NZ_CP020052.1_2735355_2737185_+	COG0471, CitT, Di- and tricarboxylate transporters [Inorganic ion transport and metabolism]
