assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002043045.1_ASM204304v1	NZ_CP015593	Listeria monocytogenes strain ICDC-LM188, complete genome	1	209683-209837	1	CRISPRCasFinder	no	cas3	csa3,DinG,cas3,WYL,casR,DEDDh,csn2,cas2,cas1,cas9	Unclear	TTTCCACCACCACCTACGGATGAAGAGTTAAGACTTGCTTTGCCAGAGAC	50	0	0	NA	NA	NA	1	1	Unclear	csa3,DinG,cas3,WYL,casR,DEDDh,csn2,cas2,cas1,cas9	NA,NA	NA|231aa|up_9|NZ_CP015593.1_196924_197617_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|403aa|up_8|NZ_CP015593.1_197613_198822_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|103aa|up_7|NZ_CP015593.1_199506_199815_+	PRK13259, PRK13259, septation regulator SpoVG	NA|103aa|up_6|NZ_CP015593.1_199933_200242_+	PRK13259, PRK13259, septation regulator SpoVG	NA|458aa|up_5|NZ_CP015593.1_200628_202002_+	PRK14354, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA|319aa|up_4|NZ_CP015593.1_202052_203009_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|238aa|up_3|NZ_CP015593.1_203052_203766_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|318aa|up_2|NZ_CP015593.1_204038_204992_-	cd00137, PI-PLCc, Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C	NA|530aa|up_1|NZ_CP015593.1_205234_206824_+	pfam01289, Thiol_cytolysin, Thiol-activated cytolysin	NA|511aa|up_0|NZ_CP015593.1_207158_208691_+	COG3227, LasB, Zinc metalloprotease (elastase) [Amino acid transport and metabolism]	NA|290aa|down_0|NZ_CP015593.1_210845_211715_+	smart00770, Zn_dep_PLPC, Zinc dependent phospholipase C (alpha toxin)	NA|108aa|down_1|NZ_CP015593.1_211786_212110_+	pfam17606, DUF5502, Family of unknown function (DUF5502)	NA|154aa|down_2|NZ_CP015593.1_212242_212704_+	COG4808, COG4808, Uncharacterized protein conserved in bacteria [Function unknown]	NA|111aa|down_3|NZ_CP015593.1_212756_213089_-	PRK01119, PRK01119, putative heavy metal-binding protein	NA|244aa|down_4|NZ_CP015593.1_213155_213887_-	pfam08713, DNA_alkylation, DNA alkylation repair enzyme	NA|314aa|down_5|NZ_CP015593.1_213907_214849_-	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	NA|208aa|down_6|NZ_CP015593.1_215142_215766_+	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed	NA|195aa|down_7|NZ_CP015593.1_215855_216440_+	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|187aa|down_8|NZ_CP015593.1_216546_217107_+	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional	cas3|1180aa|down_9|NZ_CP015593.1_217220_220760_+	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
GCF_002043045.1_ASM204304v1	NZ_CP015593	Listeria monocytogenes strain ICDC-LM188, complete genome	2	497581-498165	1	CRT	no		csa3,DinG,cas3,WYL,casR,DEDDh,csn2,cas2,cas1,cas9	Orphan	GATGTAAGTAATTTTGATACNAGTTCAGTAACTNATATG	39	0	0	NA	NA	NA	7	7	Orphan	csa3,DinG,cas3,WYL,casR,DEDDh,csn2,cas2,cas1,cas9	NA,NA|89aa|down_0|NZ_CP015593.1_498519_498786_+	NA|252aa|up_9|NZ_CP015593.1_481328_482084_-	pfam16160, DUF4866, Domain of unknown function (DUF4866)	NA|720aa|up_8|NZ_CP015593.1_482200_484360_-	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|383aa|up_7|NZ_CP015593.1_484356_485505_-	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|316aa|up_6|NZ_CP015593.1_485509_486457_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|532aa|up_5|NZ_CP015593.1_486612_488208_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|428aa|up_4|NZ_CP015593.1_488342_489626_+	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain	NA|367aa|up_3|NZ_CP015593.1_489626_490727_+	COG3535, COG3535, Uncharacterized conserved protein [Function unknown]	NA|517aa|up_2|NZ_CP015593.1_490719_492270_+	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|513aa|up_1|NZ_CP015593.1_492905_494444_+	pfam05043, Mga, Mga helix-turn-helix domain	NA|694aa|up_0|NZ_CP015593.1_494706_496788_+	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|89aa|down_0|NZ_CP015593.1_498519_498786_+	NA	NA|321aa|down_1|NZ_CP015593.1_498865_499828_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|276aa|down_2|NZ_CP015593.1_500589_501417_+	pfam05708, Peptidase_C92, Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family	NA|120aa|down_3|NZ_CP015593.1_501444_501804_+	pfam11337, DUF3139, Protein of unknown function (DUF3139)	NA|187aa|down_4|NZ_CP015593.1_502129_502690_+	pfam14278, TetR_C_8, Transcriptional regulator C-terminal region	NA|567aa|down_5|NZ_CP015593.1_502799_504500_+	COG4716, COG4716, Myosin-crossreactive antigen [Function unknown]	NA|368aa|down_6|NZ_CP015593.1_504650_505754_+	PRK14455, PRK14455, ribosomal RNA large subunit methyltransferase N; Provisional	NA|160aa|down_7|NZ_CP015593.1_505843_506323_+	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown]	NA|122aa|down_8|NZ_CP015593.1_506480_506846_+	PRK13316, PRK13316, heme oxygenase IsdG	NA|192aa|down_9|NZ_CP015593.1_507015_507591_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA
GCF_002043045.1_ASM204304v1	NZ_CP015593	Listeria monocytogenes strain ICDC-LM188, complete genome	3	2542509-2542670	2	CRISPRCasFinder	no	WYL	csa3,DinG,cas3,WYL,casR,DEDDh,csn2,cas2,cas1,cas9	Unclear	TTTTTTTATGGAAACAACGCTCCACTTTGTTACGCCTTGTATTGGAGTTCTAGGG	55	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,WYL,casR,DEDDh,csn2,cas2,cas1,cas9	NA|140aa|up_8|NZ_CP015593.1_2526709_2527129_-,NA|58aa|down_3|NZ_CP015593.1_2544842_2545016_-	NA|190aa|up_9|NZ_CP015593.1_2525964_2526534_-	cd06259, YdcF-like, YdcF-like	NA|140aa|up_8|NZ_CP015593.1_2526709_2527129_-	NA	NA|354aa|up_7|NZ_CP015593.1_2528051_2529113_-	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily	NA|1311aa|up_6|NZ_CP015593.1_2529163_2533096_-	COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]	NA|315aa|up_5|NZ_CP015593.1_2533110_2534055_-	NF033189, internalin_A, class 1 internalin InlA	NA|1092aa|up_4|NZ_CP015593.1_2534115_2537391_-	COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]	NA|303aa|up_3|NZ_CP015593.1_2537773_2538682_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|155aa|up_2|NZ_CP015593.1_2538738_2539203_-	pfam01668, SmpB, SmpB protein	NA|794aa|up_1|NZ_CP015593.1_2539218_2541600_-	TIGR02063, Ribonuclease_R, ribonuclease R	NA|249aa|up_0|NZ_CP015593.1_2541633_2542380_-	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|78aa|down_0|NZ_CP015593.1_2542741_2542975_-	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]	NA|248aa|down_1|NZ_CP015593.1_2543064_2543808_-	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|240aa|down_2|NZ_CP015593.1_2543990_2544710_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|58aa|down_3|NZ_CP015593.1_2544842_2545016_-	NA	NA|431aa|down_4|NZ_CP015593.1_2545118_2546411_-	PRK00077, eno, enolase; Provisional	NA|511aa|down_5|NZ_CP015593.1_2546545_2548078_-	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|252aa|down_6|NZ_CP015593.1_2548079_2548835_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|397aa|down_7|NZ_CP015593.1_2548880_2550071_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|337aa|down_8|NZ_CP015593.1_2550205_2551216_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|349aa|down_9|NZ_CP015593.1_2551248_2552295_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
GCF_002043045.1_ASM204304v1	NZ_CP015593	Listeria monocytogenes strain ICDC-LM188, complete genome	4	2711278-2713756	3,2,1	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	csa3,DinG,cas3,WYL,casR,DEDDh,csn2,cas2,cas1,cas9	Type II-A,Type II-C,Type II-B	GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	36,36,36	2	2	2711776-2711805|2712040-2712069	NZ_CP015593.1_1229657-1229686|NZ_CP015593.1_2404639-2404668	II-A,II-B:II-A,II-B:II-A,II-B	37,37,13	37	TypeII-A,TypeII-C,TypeII-B	csa3,DinG,cas3,WYL,casR,DEDDh,csn2,cas2,cas1,cas9	NA|121aa|up_0|NZ_CP015593.1_2710390_2710753_-,NA|160aa|down_4|NZ_CP015593.1_2720255_2720735_-	NA|159aa|up_9|NZ_CP015593.1_2693090_2693567_-	COG2427, COG2427, Uncharacterized conserved protein [Function unknown]	NA|996aa|up_8|NZ_CP015593.1_2693566_2696554_-	COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only]	NA|281aa|up_7|NZ_CP015593.1_2697051_2697894_+	COG1912, COG1912, Uncharacterized conserved protein [Function unknown]	NA|494aa|up_6|NZ_CP015593.1_2697943_2699425_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|296aa|up_5|NZ_CP015593.1_2699525_2700413_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|343aa|up_4|NZ_CP015593.1_2706109_2707138_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|509aa|up_3|NZ_CP015593.1_2707406_2708933_+	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]	NA|284aa|up_2|NZ_CP015593.1_2708973_2709825_-	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR)	NA|141aa|up_1|NZ_CP015593.1_2709846_2710269_-	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|121aa|up_0|NZ_CP015593.1_2710390_2710753_-	NA	csn2|221aa|down_0|NZ_CP015593.1_2713884_2714547_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|114aa|down_1|NZ_CP015593.1_2714536_2714878_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|289aa|down_2|NZ_CP015593.1_2714874_2715741_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1335aa|down_3|NZ_CP015593.1_2715741_2719746_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|160aa|down_4|NZ_CP015593.1_2720255_2720735_-	NA	NA|131aa|down_5|NZ_CP015593.1_2720958_2721351_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|146aa|down_6|NZ_CP015593.1_2721372_2721810_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|249aa|down_7|NZ_CP015593.1_2722004_2722751_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|266aa|down_8|NZ_CP015593.1_2722756_2723554_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|289aa|down_9|NZ_CP015593.1_2723556_2724423_-	PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional
