The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP020046	Thiomonas intermedia strain ATCC 15466 chromosome, complete genome	3301026	643095	688969	3301026	protease,transposase,capsid,integrase	Erysipelothrix_phage(23.08%)	38	650591:650609	692866:692884
WP_079415936.1|643095_643374_+|integrase	phage integrase N-terminal SAM-like domain-containing protein	integrase	NA	NA	NA	NA
WP_079415939.1|643555_645049_-|protease	DegQ family serine endoprotease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	25.6	1.0e-22
WP_079415941.1|645218_645962_+	SIMPL domain-containing protein	NA	NA	NA	NA	NA
WP_079415943.1|646152_647028_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_079415945.1|647053_647506_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_079415947.1|647548_648538_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_079415949.1|648621_649191_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_079415951.1|649266_649884_-	cytochrome c5 family protein	NA	NA	NA	NA	NA
650591:650609	attL	TGGCGGAGACGAAGGGATT	NA	NA	NA	NA
WP_079415954.1|650768_651953_+|integrase	site-specific integrase	integrase	A0A077KET4	Ralstonia_phage	47.5	2.3e-86
WP_079415956.1|651949_652147_-	hypothetical protein	NA	NA	NA	NA	NA
WP_154048405.1|652222_652810_-	hypothetical protein	NA	NA	NA	NA	NA
WP_154048406.1|652826_653699_-	hypothetical protein	NA	NA	NA	NA	NA
WP_079415962.1|653809_655219_-	DUF2130 domain-containing protein	NA	NA	NA	NA	NA
WP_079415964.1|656795_657017_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_079415965.1|657013_660268_+	helicase	NA	A0A2K5B253	Erysipelothrix_phage	44.0	1.3e-240
WP_079415967.1|660264_662955_+	ATP-binding domain-containing protein	NA	NA	NA	NA	NA
WP_079415969.1|662971_664759_+	DUF262 domain-containing protein	NA	NA	NA	NA	NA
WP_079415971.1|664755_665595_+	DUF4391 domain-containing protein	NA	NA	NA	NA	NA
WP_079415973.1|665735_667004_+	ATP-binding protein	NA	V9QJ85	Oenococcus_phage	29.8	3.0e-07
WP_079415975.1|667008_667686_+	RloB domain-containing protein	NA	NA	NA	NA	NA
WP_079420277.1|667719_669678_+	site-specific DNA-methyltransferase	NA	A0A2K5B2C1	Erysipelothrix_phage	37.3	2.4e-109
WP_079415977.1|669685_670801_+	Fic family protein	NA	D7RWK9	Brochothrix_phage	33.6	1.7e-35
WP_079415979.1|670974_673983_+	DEAD/DEAH box helicase family protein	NA	A0A2K5B256	Erysipelothrix_phage	40.7	2.7e-192
WP_079420231.1|674280_675825_+|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_079415568.1|675847_676639_+	ATP-binding protein	NA	A0A2L1IVB6	Escherichia_phage	34.9	8.8e-34
WP_079415981.1|677615_677897_-	hypothetical protein	NA	NA	NA	NA	NA
WP_079415983.1|677893_678622_-	hypothetical protein	NA	NA	NA	NA	NA
WP_079415985.1|678618_678843_-	hypothetical protein	NA	NA	NA	NA	NA
WP_079415987.1|678957_679398_-	hypothetical protein	NA	NA	NA	NA	NA
WP_079415989.1|679714_681169_-	hypothetical protein	NA	K4HZY1	Acidithiobacillus_phage	37.1	4.4e-71
WP_154048407.1|681165_681498_-	hypothetical protein	NA	NA	NA	NA	NA
WP_079415993.1|681620_682094_-	hypothetical protein	NA	NA	NA	NA	NA
WP_079415995.1|682090_682282_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_079415997.1|683474_684836_-|capsid	phage major capsid protein	capsid	G8EXZ9	Synechococcus_phage	28.1	6.4e-16
WP_079415999.1|685016_685262_-	hypothetical protein	NA	NA	NA	NA	NA
WP_154048408.1|685264_687052_-	DUF927 domain-containing protein	NA	A0A1B0VP75	Pseudomonas_phage	33.4	2.4e-71
WP_154048409.1|687048_687744_-	toprim domain-containing protein	NA	Q8LTT9	Enterobacteria_phage	36.6	1.2e-10
WP_079416005.1|687772_688969_-|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	44.7	7.9e-95
692866:692884	attR	TGGCGGAGACGAAGGGATT	NA	NA	NA	NA
>prophage 2
NZ_CP020046	Thiomonas intermedia strain ATCC 15466 chromosome, complete genome	3301026	715064	723249	3301026		uncultured_Mediterranean_phage(33.33%)	8	NA	NA
WP_079416050.1|715064_716480_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	24.4	3.6e-22
WP_079416052.1|716533_717343_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_079416054.1|717384_718443_-	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	34.4	7.4e-28
WP_079416056.1|718451_719426_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A2K9V574	Lactobacillus_phage	52.2	6.2e-05
WP_079416058.1|719456_720314_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	44.2	1.7e-27
WP_079416060.1|720310_721066_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	53.6	8.6e-63
WP_154048412.1|721666_722566_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_079416062.1|722607_723249_-	phosphatidylserine decarboxylase	NA	A0A1V0SDU9	Indivirus	29.9	1.5e-12
>prophage 3
NZ_CP020046	Thiomonas intermedia strain ATCC 15466 chromosome, complete genome	3301026	1565756	1612755	3301026	transposase,integrase	Staphylococcus_phage(30.0%)	32	1577101:1577116	1615857:1615872
WP_079417477.1|1565756_1566725_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_154048530.1|1567159_1568365_+	urea ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_079417481.1|1568455_1569379_+	urea ABC transporter permease subunit UrtB	NA	NA	NA	NA	NA
WP_079417483.1|1569395_1570517_+	urea ABC transporter permease subunit UrtC	NA	NA	NA	NA	NA
WP_079417485.1|1570546_1571293_+	urea ABC transporter ATP-binding protein UrtD	NA	A0A2H4PQG7	Staphylococcus_phage	29.7	1.5e-19
WP_079417487.1|1571316_1572006_+	urea ABC transporter ATP-binding subunit UrtE	NA	A0A2H4PQG7	Staphylococcus_phage	24.9	3.6e-15
WP_079417489.1|1572080_1573307_+	acetamidase/formamidase family protein	NA	A0A1V0S8X7	Catovirus	56.9	1.3e-132
WP_079417491.1|1573360_1573702_+	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
WP_079417493.1|1573732_1574773_+	aliphatic amidase	NA	NA	NA	NA	NA
WP_079417495.1|1574816_1575620_+	CbbQ/NirQ/NorQ/GpvN family protein	NA	NA	NA	NA	NA
WP_169836764.1|1575796_1577248_+	VWA domain-containing protein	NA	NA	NA	NA	NA
1577101:1577116	attL	CATCATCCTGCTGACC	NA	NA	NA	NA
WP_013105975.1|1578659_1579799_+|transposase	IS630-like element ISThsp15 family transposase	transposase	NA	NA	NA	NA
WP_154048531.1|1579845_1580061_+	hypothetical protein	NA	NA	NA	NA	NA
WP_079417499.1|1580088_1582257_+	response regulator	NA	A0A1V0SGX0	Hokovirus	27.8	6.0e-32
WP_079417501.1|1582249_1583167_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_079417503.1|1583878_1584595_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_079417506.1|1584594_1587714_-	HsdR family type I site-specific deoxyribonuclease	NA	A0A220A398	Liberibacter_phage	29.5	1.3e-56
WP_079417508.1|1587943_1588612_-	HNH endonuclease	NA	NA	NA	NA	NA
WP_079417510.1|1588611_1589949_-	AAA family ATPase	NA	C7BGE8	Burkholderia_phage	24.7	3.1e-15
WP_079417512.1|1589965_1591234_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_079417514.1|1591224_1593681_-	N-6 DNA methylase	NA	A0A2H4PQP4	Staphylococcus_phage	35.7	1.1e-71
WP_079417516.1|1595497_1597087_+	recombinase family protein	NA	C7F8K5	Bacillus_phage	24.5	1.6e-21
WP_079417518.1|1597463_1598627_+	Fic family protein	NA	D7RWK9	Brochothrix_phage	29.0	5.3e-35
WP_013105975.1|1598732_1599872_+|transposase	IS630-like element ISThsp15 family transposase	transposase	NA	NA	NA	NA
WP_154048531.1|1599918_1600134_+	hypothetical protein	NA	NA	NA	NA	NA
WP_051849179.1|1600161_1600878_+	hypothetical protein	NA	NA	NA	NA	NA
WP_079417520.1|1600861_1603378_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_154048446.1|1603374_1606569_+	DNA breaking-rejoining enzyme, catalytic core	NA	NA	NA	NA	NA
WP_079415568.1|1607842_1608634_-	ATP-binding protein	NA	A0A2L1IVB6	Escherichia_phage	34.9	8.8e-34
WP_079420231.1|1608656_1610201_-|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_079417526.1|1610569_1611004_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_031407563.1|1611702_1612755_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
1615857:1615872	attR	GGTCAGCAGGATGATG	NA	NA	NA	NA
>prophage 4
NZ_CP020046	Thiomonas intermedia strain ATCC 15466 chromosome, complete genome	3301026	1658568	1665433	3301026		Acinetobacter_phage(50.0%)	7	NA	NA
WP_079417564.1|1658568_1659132_-	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	31.4	2.0e-11
WP_079417566.1|1659142_1659526_-	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_079417354.1|1659785_1660976_-	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	27.5	4.4e-13
WP_079417568.1|1661486_1662275_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	50.0	8.5e-53
WP_079417570.1|1662271_1663315_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	45.7	9.1e-79
WP_079417572.1|1663301_1663892_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	58.9	2.1e-64
WP_079420437.1|1663933_1665433_-	anthranilate synthase component I	NA	A0A0B5J984	Pandoravirus	31.0	9.2e-40
