The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP020020	Staphylococcus aureus subsp. aureus strain ATCC 6538 chromosome, complete genome	2772993	726797	734617	2772993		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|726797_727853_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|727852_728539_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|728513_728987_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093556.1|729328_729769_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637687.1|730048_730633_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|730731_731445_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|731448_731868_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|731869_732538_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604515.1|732888_733482_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	43.5	1.2e-38
WP_001217794.1|733465_734617_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	3.5e-23
>prophage 2
NZ_CP020020	Staphylococcus aureus subsp. aureus strain ATCC 6538 chromosome, complete genome	2772993	746588	761318	2772993		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000663025.1|746588_747647_+	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	27.3	1.5e-20
WP_000197275.1|747941_748484_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429006.1|749163_750081_-	lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
WP_031797439.1|750170_750272_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|750349_751855_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|752195_752696_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_042727549.1|752715_753582_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|754382_754781_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|754743_756849_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|756966_757938_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|758451_758607_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|758645_759617_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245577.1|759603_760560_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616842.1|760556_761318_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
>prophage 3
NZ_CP020020	Staphylococcus aureus subsp. aureus strain ATCC 6538 chromosome, complete genome	2772993	840020	860394	2772993	integrase,coat,terminase	Staphylococcus_phage(81.82%)	28	842557:842573	857656:857672
WP_000571218.1|840020_841046_+	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.8	1.2e-27
WP_000520233.1|841038_841734_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000732326.1|841751_842573_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
842557:842573	attL	TTATTCCTGCTAAATAA	NA	NA	NA	NA
WP_000264181.1|842715_843936_-|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	47.3	4.6e-98
WP_042727546.1|844023_844752_-	staphylococcal enterotoxin type K	NA	A0EX09	Staphylococcus_phage	31.8	1.6e-21
WP_001033317.1|844775_845504_-	staphylococcal enterotoxin type Q	NA	A0EX09	Staphylococcus_phage	35.4	7.9e-29
WP_000142630.1|845678_846413_-	helix-turn-helix transcriptional regulator	NA	Q4ZE79	Staphylococcus_phage	98.4	8.5e-132
WP_001063624.1|846562_846775_+	helix-turn-helix transcriptional regulator	NA	Q4ZE78	Staphylococcus_phage	98.6	3.4e-33
WP_001138298.1|846775_847048_+	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	100.0	3.4e-46
WP_012990927.1|847059_847206_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001058492.1|847198_847408_+	hypothetical protein	NA	Q4ZE76	Staphylococcus_phage	95.7	7.7e-30
WP_001103944.1|847410_847731_+	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	58.2	6.5e-20
WP_042727545.1|847797_848667_+	mobile element-associated protein	NA	A0A1W6JQL5	Staphylococcus_phage	95.5	3.0e-160
WP_042727544.1|848683_850141_+	virulence-associated protein E	NA	A0A1W6JQD6	Staphylococcus_phage	96.1	4.6e-278
WP_042727543.1|850442_850805_+	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	93.3	1.2e-62
WP_042727542.1|850806_851091_+	hypothetical protein	NA	A0A1W6JQE4	Staphylococcus_phage	92.6	1.4e-45
WP_042727541.1|851087_851729_+	pathogenicity island protein	NA	Q4ZE67	Staphylococcus_phage	94.4	7.7e-113
WP_042727540.1|852302_852644_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	97.3	5.4e-57
WP_000846284.1|852655_853234_+	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.9	4.8e-29
WP_000448775.1|853251_853470_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000771380.1|853520_854048_+|coat	spore coat protein	coat	Q4ZE87	Staphylococcus_phage	95.4	2.1e-87
WP_001656917.1|854179_854392_+	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	97.1	5.4e-31
WP_001293071.1|854388_854958_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	98.4	4.6e-101
WP_000801979.1|855234_856203_+	Abi family protein	NA	A0A0H4U080	Erysipelothrix_phage	27.3	5.9e-24
WP_001035618.1|856437_856992_-	DUF4888 domain-containing protein	NA	A0A1W6JQE5	Staphylococcus_phage	76.1	4.8e-71
WP_000752917.1|858025_858220_+	CsbD family protein	NA	NA	NA	NA	NA
857656:857672	attR	TTATTCCTGCTAAATAA	NA	NA	NA	NA
WP_001183858.1|858453_859305_-	DUF368 domain-containing protein	NA	NA	NA	NA	NA
WP_000168845.1|859632_860394_+	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	23.3	4.4e-06
>prophage 4
NZ_CP020020	Staphylococcus aureus subsp. aureus strain ATCC 6538 chromosome, complete genome	2772993	1020119	1028592	2772993		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|1020119_1020602_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010407.1|1020588_1021713_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|1021716_1022421_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000848350.1|1022420_1022684_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666806.1|1022685_1023357_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_042727722.1|1023349_1025539_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	3.5e-141
WP_000483720.1|1025517_1027002_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	1.9e-45
WP_042727723.1|1026994_1028023_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
WP_000238669.1|1028025_1028592_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 5
NZ_CP020020	Staphylococcus aureus subsp. aureus strain ATCC 6538 chromosome, complete genome	2772993	1285104	1303053	2772993	portal,capsid,head,terminase,integrase	Staphylococcus_phage(58.33%)	29	1278828:1278845	1305044:1305061
1278828:1278845	attL	ATTCAATCATTAATATAT	NA	NA	NA	NA
WP_001836882.1|1285104_1286232_-|integrase	site-specific integrase	integrase	A0A0C5AN64	Paenibacillus_phage	31.4	6.2e-33
WP_001183750.1|1286284_1286980_-	hypothetical protein	NA	A0A2H4J5B8	uncultured_Caudovirales_phage	50.3	3.6e-07
WP_000554410.1|1286991_1287375_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000664917.1|1287521_1287914_-	helix-turn-helix domain-containing protein	NA	A0A2I6PE55	Staphylococcus_phage	53.6	1.6e-28
WP_001209962.1|1288081_1288300_+	DUF739 family protein	NA	A0A2I6PE94	Staphylococcus_phage	62.5	4.9e-19
WP_000932238.1|1288326_1288602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000800341.1|1289025_1289232_-	hypothetical protein	NA	A1BTY8	Staphylococcus_virus	75.0	3.3e-25
WP_001157025.1|1289292_1289976_+	phage repressor protein	NA	A9CR56	Staphylococcus_phage	85.6	5.2e-107
WP_000072840.1|1290074_1290236_+	DUF1270 family protein	NA	R4IH12	Staphylococcus_phage	69.8	1.1e-12
WP_000786993.1|1290322_1290640_+	DUF2482 family protein	NA	W5RAK4	Staphylococcus_phage	80.6	1.6e-39
WP_000786634.1|1290629_1290896_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	53.6	3.0e-18
WP_001004327.1|1290900_1291437_+	hypothetical protein	NA	A0A0H3U480	Staphylococcus_phage	82.5	1.7e-76
WP_042727645.1|1291437_1292217_+	ATP-binding protein	NA	A0A1W6JPW0	Staphylococcus_phage	87.6	6.7e-127
WP_072433566.1|1292297_1292792_+	single-stranded DNA-binding protein	NA	A7TWM8	Staphylococcus_phage	94.0	6.4e-83
WP_000929466.1|1292804_1293707_+	DnaD domain protein	NA	A0A1P8L6F0	Staphylococcus_phage	52.0	2.9e-49
WP_000946005.1|1293707_1293998_+	hypothetical protein	NA	A0A223LIA9	Staphylococcus_phage	58.1	7.2e-18
WP_000714410.1|1294012_1294177_+	hypothetical protein	NA	A0A0E3T9L7	Staphylococcus_phage	88.9	1.1e-18
WP_000860979.1|1294176_1294488_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000185176.1|1294480_1295011_+	nucleotide pyrophosphohydrolase	NA	A0A1P8VVP1	Streptococcus_phage	38.2	5.2e-22
WP_025174970.1|1295152_1295260_+	DUF1381 domain-containing protein	NA	C8CH06	Staphylococcus_phage	87.5	3.2e-08
WP_000835355.1|1295256_1295721_+	hypothetical protein	NA	C9E2P0	Enterococcus_phage	43.0	3.2e-20
WP_000653930.1|1295997_1296486_+	hypothetical protein	NA	R9TMH4	Paenibacillus_phage	27.7	4.3e-07
WP_000090969.1|1296638_1297067_+	helix-turn-helix domain-containing protein	NA	A1EAE0	Streptococcus_phage	45.1	1.1e-25
WP_000207537.1|1297053_1298328_+|terminase	PBSX family phage terminase large subunit	terminase	Q4ZE37	Staphylococcus_virus	76.4	1.9e-195
WP_000158568.1|1298340_1299789_+|portal	phage portal protein	portal	Q4ZE36	Staphylococcus_virus	69.4	7.4e-196
WP_078102971.1|1300318_1301311_+|head	head morphogenesis protein	head	Q4ZE35	Staphylococcus_virus	69.6	2.6e-51
WP_031835011.1|1301503_1301632_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001566611.1|1301598_1301811_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001120914.1|1302591_1303053_+|capsid	phage capsid protein	capsid	A0A1J0MF61	Staphylococcus_phage	46.0	3.8e-29
1305044:1305061	attR	ATATATTAATGATTGAAT	NA	NA	NA	NA
>prophage 6
NZ_CP020020	Staphylococcus aureus subsp. aureus strain ATCC 6538 chromosome, complete genome	2772993	1583248	1591578	2772993	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1583248_1584034_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924220.1|1584159_1585050_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	36.0	3.4e-26
WP_001062187.1|1585059_1586406_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
WP_000683929.1|1586519_1587620_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_000624583.1|1587622_1588300_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1588430_1589537_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217257.1|1589760_1591578_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.3	7.9e-54
>prophage 7
NZ_CP020020	Staphylococcus aureus subsp. aureus strain ATCC 6538 chromosome, complete genome	2772993	1659411	1668454	2772993	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1659411_1659930_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000594991.1|1659951_1662225_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	5.2e-63
WP_000749795.1|1662427_1664707_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1664981_1665242_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1665260_1666400_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019178.1|1666422_1667448_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005768.1|1667449_1668454_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 8
NZ_CP020020	Staphylococcus aureus subsp. aureus strain ATCC 6538 chromosome, complete genome	2772993	1793760	1862425	2772993	protease,tRNA	Staphylococcus_phage(95.83%)	68	NA	NA
WP_001050538.1|1793760_1800321_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	99.0	1.6e-309
WP_000836465.1|1800646_1800958_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
WP_001108728.1|1800979_1803394_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.3	0.0e+00
WP_001025061.1|1803684_1804866_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_000526539.1|1804975_1805929_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|1805925_1806489_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|1806608_1807010_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1807581_1808409_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1808411_1808531_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|1808642_1809644_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008551.1|1809765_1810230_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_042727556.1|1810242_1811424_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.5	1.5e-226
WP_000493892.1|1811434_1812067_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_000384185.1|1812073_1813105_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	4.0e-196
WP_001261668.1|1813597_1815100_-	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.9e-29
WP_000221177.1|1815622_1815937_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	9.8e-53
WP_000989122.1|1815936_1817229_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.3	9.4e-227
WP_001032833.1|1817315_1818170_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1818445_1818670_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671052.1|1818868_1819339_+	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
WP_001153742.1|1819451_1819895_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030469.1|1819881_1820325_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001168901.1|1820620_1821256_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|1821695_1822409_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091445.1|1822668_1822971_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|1823226_1823592_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623478.1|1823588_1823942_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	100.0	2.6e-22
WP_000453314.1|1824324_1825158_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	100.0	5.4e-159
WP_000366163.1|1825369_1826278_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
WP_000933822.1|1826402_1827596_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109906.1|1827967_1829560_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_001834463.1|1829937_1830684_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.8	1.4e-142
WP_000672014.1|1830688_1831162_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
WP_000718107.1|1831227_1831485_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778525.1|1831481_1832483_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.9	2.2e-186
WP_000348374.1|1832487_1833966_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.4	8.1e-283
WP_072433592.1|1834124_1834580_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	97.9	5.7e-78
WP_001795535.1|1834882_1835533_+	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	2.7e-44
WP_000070655.1|1835613_1836609_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	98.8	6.2e-77
WP_000669027.1|1836684_1837311_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	93.8	5.3e-90
WP_000627537.1|1837351_1837693_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	95.6	3.0e-55
WP_000414214.1|1837793_1838366_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	96.6	1.1e-25
WP_000864143.1|1838562_1839120_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	96.2	2.7e-77
WP_000809863.1|1839305_1839491_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000375476.1|1839492_1839669_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000731418.1|1841220_1841664_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000745473.1|1841663_1842107_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000221409.1|1842645_1845069_+	polysaccharide lyase 8 family protein	NA	NA	NA	NA	NA
WP_072414244.1|1845192_1845552_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000759947.1|1845775_1846216_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_001836790.1|1846260_1847874_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000095395.1|1847888_1848188_+	secretion protein	NA	NA	NA	NA	NA
WP_047210362.1|1848314_1849559_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	62.1	1.2e-125
WP_078157070.1|1849551_1851291_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.2	3.8e-287
WP_001791797.1|1851271_1851406_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038690.1|1851470_1852190_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	99.6	1.9e-131
WP_001038757.1|1852340_1853057_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	99.2	2.4e-131
WP_011447030.1|1853158_1853266_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038706.1|1853214_1853934_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.2	5.1e-129
WP_001038872.1|1854054_1854774_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	98.7	1.3e-129
WP_001039444.1|1854831_1855554_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	100.0	6.4e-132
WP_001039433.1|1855678_1856386_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	99.6	7.7e-130
WP_001092776.1|1857348_1857918_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	62.6	2.6e-51
WP_024273481.1|1858391_1858610_-	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	77.8	1.5e-23
WP_000550252.1|1858865_1859339_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000543856.1|1859343_1860135_+	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
WP_000782446.1|1860504_1861488_-	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.1	2.3e-185
WP_000473596.1|1861489_1862425_-	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
>prophage 9
NZ_CP020020	Staphylococcus aureus subsp. aureus strain ATCC 6538 chromosome, complete genome	2772993	1950243	2042242	2772993	portal,head,capsid,holin,protease,transposase,tRNA,tail,terminase,integrase	Staphylococcus_phage(90.91%)	111	1998056:1998071	2048081:2048096
WP_000545370.1|1950243_1951671_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_000027917.1|1951683_1953141_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_000170162.1|1953142_1953445_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_000957020.1|1953811_1955350_+	sodium/proline symporter PutP	NA	NA	NA	NA	NA
WP_000831695.1|1955438_1956638_-	CamS family sex pheromone protein	NA	NA	NA	NA	NA
WP_000774565.1|1956650_1958654_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.1	5.8e-114
WP_000992921.1|1958657_1960850_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000272070.1|1960846_1961539_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_001165363.1|1961710_1962013_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000572878.1|1962121_1963417_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_000827750.1|1964276_1965443_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434934.1|1965473_1965800_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669861.1|1966091_1966265_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011542.1|1966245_1966848_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040866.1|1967118_1967940_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
WP_000284433.1|1967932_1969402_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	3.5e-108
WP_000897635.1|1969585_1970662_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177828.1|1970681_1971476_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|1971547_1971655_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323164.1|1971665_1973228_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275706.1|1973432_1974530_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.9	2.5e-47
WP_000149686.1|1974901_1975462_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|1975514_1976444_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001808146.1|1976585_1977905_+|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
WP_001790680.1|1978159_1978333_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021216.1|1978384_1979764_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181322.1|1979883_1980912_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000205106.1|1981181_1981583_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000267034.1|1982155_1982329_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188074.1|1982779_1983820_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713070.1|1983876_1984719_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033971.1|1984715_1985273_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966288.1|1985332_1985857_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|1985977_1986541_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221651.1|1986606_1987347_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763048.1|1987346_1988219_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_000645725.1|1988215_1988896_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991303.1|1988896_1989793_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000691584.1|1989789_1990170_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681968.1|1990428_1990605_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|1990847_1990946_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068523.1|1991145_1992432_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_031864371.1|1993011_1995075_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000669789.1|1996032_1996212_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001791826.1|1996522_1996783_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702262.1|1996835_1997186_-	complement inhibitor SCIN-A	NA	A7TWS0	Staphylococcus_phage	100.0	7.5e-54
WP_094971204.1|1997695_1998154_-	amidase	NA	R9QTN8	Staphylococcus_phage	100.0	2.0e-86
1998056:1998071	attL	ATAAAAATAACCACAC	NA	NA	NA	NA
WP_000920041.1|1998682_1999174_-	staphylokinase	NA	A7TWR8	Staphylococcus_phage	100.0	8.0e-86
WP_000861038.1|1999364_2000120_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611512.1|2000131_2000386_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_001791821.1|2000437_2000545_+	hypothetical protein	NA	NA	NA	NA	NA
WP_072353918.1|2000597_2000774_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	94.8	5.5e-21
WP_000340977.1|2000916_2001291_-	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
WP_001262620.1|2001346_2001634_-	hypothetical protein	NA	C5I682	Staphylococcus_phage	100.0	9.9e-44
WP_001000058.1|2001679_2001832_-	hypothetical protein	NA	A0A1W6JPL6	Staphylococcus_phage	100.0	7.6e-19
WP_042727565.1|2001824_2005607_-	phage minor structural protein	NA	R9QT86	Staphylococcus_phage	100.0	0.0e+00
WP_001154317.1|2005622_2007113_-|tail	phage tail protein	tail	R9QST9	Staphylococcus_phage	100.0	3.1e-298
WP_042727566.1|2007112_2011762_-|tail	phage tail tape measure protein	tail	R9QSQ8	Staphylococcus_phage	100.0	0.0e+00
WP_000570353.1|2011817_2011940_-	hypothetical protein	NA	D2JLF6	Staphylococcus_phage	100.0	6.9e-15
WP_000442601.1|2011999_2012446_-	hypothetical protein	NA	D2JLF5	Staphylococcus_phage	100.0	5.4e-73
WP_000570652.1|2012510_2013464_-|tail	phage tail protein	tail	A7TWD0	Staphylococcus_phage	100.0	6.2e-175
WP_000611452.1|2013464_2013845_-	hypothetical protein	NA	D2JLF3	Staphylococcus_phage	100.0	5.8e-68
WP_000501244.1|2013841_2014219_-	HK97 gp10 family phage protein	NA	D2JLF2	Staphylococcus_phage	100.0	1.1e-61
WP_000975314.1|2014218_2014554_-|head,tail	head-tail adaptor protein	head,tail	A7TWC7	Staphylococcus_phage	100.0	1.1e-59
WP_001177483.1|2014540_2014873_-|head,tail	phage head-tail adapter protein	head,tail	D2JLF0	Staphylococcus_phage	100.0	2.1e-58
WP_001252099.1|2014881_2015040_-	hypothetical protein	NA	D2JLE9	Staphylococcus_phage	100.0	3.2e-20
WP_000849950.1|2015075_2016323_-|capsid	phage major capsid protein	capsid	A7TWC4	Staphylococcus_phage	100.0	5.0e-209
WP_000032525.1|2016410_2016995_-|head,protease	HK97 family phage prohead protease	head,protease	D2JLE7	Staphylococcus_phage	100.0	9.8e-107
WP_072433585.1|2016987_2018178_-|portal	phage portal protein	portal	R9QSV8	Staphylococcus_phage	100.0	5.3e-224
WP_000644966.1|2018243_2018483_-	membrane protein	NA	R9QT78	Staphylococcus_phage	100.0	5.3e-35
WP_000133306.1|2018457_2020152_-|terminase	terminase	terminase	A0A1V0E5G5	Staphylococcus_phage	100.0	0.0e+00
WP_000919026.1|2020154_2020622_-|terminase	phage terminase small subunit P27 family	terminase	D2JLE3	Staphylococcus_phage	100.0	1.1e-81
WP_000817289.1|2020751_2021096_-	HNH endonuclease	NA	D2JLE2	Staphylococcus_phage	100.0	4.2e-65
WP_000406187.1|2021111_2021564_-	nucleoside triphosphate pyrophosphohydrolase family protein	NA	R9QTP3	Staphylococcus_phage	100.0	1.8e-79
WP_000282753.1|2021678_2022140_-	hypothetical protein	NA	R9QT84	Staphylococcus_phage	100.0	8.7e-74
WP_000265041.1|2022162_2022363_-	DUF1514 domain-containing protein	NA	R9QT57	Staphylococcus_phage	100.0	1.1e-28
WP_001005262.1|2022362_2023013_-	hypothetical protein	NA	D2JLD8	Staphylococcus_phage	100.0	8.9e-117
WP_000595267.1|2023171_2023321_-	hypothetical protein	NA	R9QSU6	Staphylococcus_phage	100.0	1.8e-17
WP_000195810.1|2023317_2023524_-	DUF1381 domain-containing protein	NA	S4V684	Staphylococcus_phage	100.0	7.6e-30
WP_000185669.1|2023560_2024097_-	hypothetical protein	NA	R4IG63	Staphylococcus_phage	100.0	9.4e-96
WP_001065083.1|2024089_2024338_-	DUF1024 family protein	NA	A0A2K9VBU0	Staphylococcus_phage	100.0	3.1e-38
WP_001105621.1|2024330_2024615_-	hypothetical protein	NA	E9LT36	Staphylococcus_phage	100.0	2.7e-46
WP_000982708.1|2024611_2025061_-	hypothetical protein	NA	A0A2I6PDH2	Staphylococcus_phage	100.0	9.3e-81
WP_000693615.1|2025248_2025635_-	hypothetical protein	NA	I1W655	Staphylococcus_phage	100.0	4.1e-69
WP_000131377.1|2025648_2025891_-	hypothetical protein	NA	R9QT89	Staphylococcus_phage	100.0	3.0e-41
WP_000101270.1|2025894_2026263_-	hypothetical protein	NA	A0A0E3XD52	Staphylococcus_phage	100.0	6.7e-53
WP_000401964.1|2026275_2026680_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A0E3XBN4	Staphylococcus_phage	100.0	1.4e-72
WP_000338528.1|2026688_2026907_-	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
WP_000148329.1|2026913_2027807_-	DnaD domain-containing protein	NA	A0A0E3TAG7	Staphylococcus_phage	100.0	1.1e-141
WP_000934769.1|2027836_2028307_-	single-stranded DNA-binding protein	NA	A0A0E3T9H6	Staphylococcus_phage	100.0	5.7e-81
WP_071621397.1|2028307_2028925_-	MBL fold metallo-hydrolase	NA	S4SWA4	Staphylococcus_phage	100.0	9.1e-87
WP_000138475.1|2029005_2029926_-	recombinase	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_078102964.1|2029927_2031871_-	AAA family ATPase	NA	R9QT82	Staphylococcus_phage	99.7	0.0e+00
WP_042727568.1|2031879_2032143_-	hypothetical protein	NA	R9QT48	Staphylococcus_phage	100.0	7.7e-43
WP_000291488.1|2032151_2032412_-	DUF1108 family protein	NA	A0A2I6PDH1	Staphylococcus_phage	100.0	2.6e-43
WP_000066020.1|2032504_2032666_-	DUF1270 domain-containing protein	NA	A0A2I6PDF7	Staphylococcus_phage	100.0	1.9e-20
WP_001798161.1|2032662_2032983_-	DUF771 domain-containing protein	NA	R9QT52	Staphylococcus_phage	100.0	1.5e-56
WP_000801108.1|2033041_2033269_+	hypothetical protein	NA	A7TWL9	Staphylococcus_phage	100.0	1.7e-38
WP_000389906.1|2033270_2033462_-	hypothetical protein	NA	A7TWL8	Staphylococcus_phage	100.0	2.8e-26
WP_000768245.1|2033511_2033868_+	DUF2513 domain-containing protein	NA	A0A1P8L6H1	Staphylococcus_phage	100.0	6.1e-59
WP_001148859.1|2033862_2034057_-	hypothetical protein	NA	A0A1P8L6G6	Staphylococcus_phage	100.0	4.3e-19
WP_001148565.1|2034072_2034861_-	phage antirepressor KilAC domain-containing protein	NA	R9QSV3	Staphylococcus_phage	100.0	1.2e-144
WP_000639922.1|2034876_2035119_-	DUF739 family protein	NA	R9QSU1	Staphylococcus_phage	100.0	9.5e-40
WP_001083967.1|2035282_2035999_+	helix-turn-helix domain-containing protein	NA	R9QTP6	Staphylococcus_phage	100.0	9.2e-131
WP_000804508.1|2036010_2036868_+	restriction endonuclease	NA	R9QTP0	Staphylococcus_phage	100.0	1.2e-161
WP_000705243.1|2036912_2037095_+	hypothetical protein	NA	R9QT81	Staphylococcus_phage	100.0	5.3e-27
WP_001013104.1|2037130_2037277_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	89.6	1.1e-14
WP_000191459.1|2037273_2037888_-	hypothetical protein	NA	A7TW88	Staphylococcus_phage	100.0	7.9e-107
WP_000857176.1|2037995_2039033_+|integrase	site-specific integrase	integrase	A7TWL3	Staphylococcus_phage	100.0	3.4e-179
WP_000595401.1|2040151_2041168_-	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.3	2.3e-26
WP_000791404.1|2041189_2042242_-	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.6	2.5e-36
2048081:2048096	attR	ATAAAAATAACCACAC	NA	NA	NA	NA
>prophage 1
NZ_CP020021	Staphylococcus aureus subsp. aureus strain ATCC 6538 plasmid unnamed1, complete sequence	27617	0	8592	27617	transposase	Streptococcus_phage(25.0%)	5	NA	NA
WP_000378396.1|0_2181_+	cadmium-translocating P-type ATPase CadA	NA	E4ZFI9	Streptococcus_phage	63.7	9.3e-251
WP_000277738.1|2543_4190_+|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	98.4	1.0e-289
WP_000277154.1|4256_5690_-	multi-copper oxidase Mco	NA	NA	NA	NA	NA
WP_078102973.1|5704_7750_-	copper-translocating P-type ATPase CopB	NA	A0A218MNH6	uncultured_virus	30.9	3.1e-70
WP_000690626.1|8016_8592_+	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.7	2.9e-42
>prophage 2
NZ_CP020021	Staphylococcus aureus subsp. aureus strain ATCC 6538 plasmid unnamed1, complete sequence	27617	19261	19888	27617		Bacillus_virus(100.0%)	1	NA	NA
WP_000593106.1|19261_19888_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.7	6.1e-22
>prophage 3
NZ_CP020021	Staphylococcus aureus subsp. aureus strain ATCC 6538 plasmid unnamed1, complete sequence	27617	22896	26550	27617	transposase	Staphylococcus_phage(100.0%)	5	NA	NA
WP_000358995.1|22896_23292_-	thioredoxin-dependent arsenate reductase	NA	A0A2H4PQT9	Staphylococcus_phage	86.3	8.5e-62
WP_000153630.1|23309_24599_-	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	81.4	6.6e-188
WP_000120605.1|24598_24913_-	As(III)-sensing metalloregulatory transcriptional repressor ArsR	NA	A0A2H4PQT4	Staphylococcus_phage	73.1	4.7e-39
WP_001035802.1|25628_25841_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001105942.1|25875_26550_-|transposase	IS6-like element ISSau6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	88.4	1.3e-113
