assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002024245.1_ASM202424v1	NZ_CP019970	Enterococcus faecium isolate 2014-VREF-114 chromosome, complete genome	1	2388551-2388660	1	CRISPRCasFinder	no		cas2,DinG,cas3,DEDDh,cas14j,RT,csa3	Orphan	TGATGAACAATACTGGTTGAGCAAAG	26	0	0	NA	NA	NA	1	1	Orphan	cas2,DinG,cas3,DEDDh,cas14j,RT,csa3,c2c10_CAS-V-U3	NA,NA	NA|215aa|up_9|NZ_CP019970.1_2381166_2381811_-	cd02205, CBS_pair_SF, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily	NA|51aa|up_8|NZ_CP019970.1_2381972_2382125_+	PRK00504, rpmG, 50S ribosomal protein L33; Validated	NA|57aa|up_7|NZ_CP019970.1_2382148_2382319_+	pfam00584, SecE, SecE/Sec61-gamma subunits of protein translocation complex	NA|182aa|up_6|NZ_CP019970.1_2382419_2382965_+	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|296aa|up_5|NZ_CP019970.1_2383041_2383929_+	pfam06028, DUF915, Alpha/beta hydrolase of unknown function (DUF915)	NA|340aa|up_4|NZ_CP019970.1_2384101_2385121_+	cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN-binding domain	NA|291aa|up_3|NZ_CP019970.1_2385211_2386084_-	TIGR00718, Probable_L-serine_dehydratase_alpha_chain, L-serine dehydratase, iron-sulfur-dependent, alpha subunit	NA|223aa|up_2|NZ_CP019970.1_2386096_2386765_-	COG1760, SdaA, L-serine deaminase [Amino acid transport and metabolism]	NA|141aa|up_1|NZ_CP019970.1_2387107_2387530_+	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|230aa|up_0|NZ_CP019970.1_2387633_2388323_+	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|168aa|down_0|NZ_CP019970.1_2388732_2389236_+	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed	NA|123aa|down_1|NZ_CP019970.1_2389288_2389657_+	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed	NA|230aa|down_2|NZ_CP019970.1_2389762_2390452_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|401aa|down_3|NZ_CP019970.1_2390533_2391736_+	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|511aa|down_4|NZ_CP019970.1_2391926_2393459_-	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|234aa|down_5|NZ_CP019970.1_2393692_2394394_+	cd01399, GlcN6P_deaminase, GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium	NA|238aa|down_6|NZ_CP019970.1_2394647_2395361_+	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|380aa|down_7|NZ_CP019970.1_2395669_2396809_+	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|322aa|down_8|NZ_CP019970.1_2396897_2397863_-	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|720aa|down_9|NZ_CP019970.1_2397912_2400072_-	PRK07306, PRK07306, ribonucleotide-diphosphate reductase subunit alpha; Validated
GCF_002024245.1_ASM202424v1	NZ_CP019970	Enterococcus faecium isolate 2014-VREF-114 chromosome, complete genome	2	2561809-2562060	1	PILER-CR	no		cas2,DinG,cas3,DEDDh,cas14j,RT,csa3	Orphan	AAATCAACCGAGAACAGTAGATGTTCGAGAAAACTTGCAGAATACTACAA	50	0	0	NA	NA	NA	2	2	Orphan	cas2,DinG,cas3,DEDDh,cas14j,RT,csa3,c2c10_CAS-V-U3	NA|261aa|up_0|NZ_CP019970.1_2558738_2559521_+,NA|66aa|down_0|NZ_CP019970.1_2562406_2562604_+,NA|204aa|down_1|NZ_CP019970.1_2562607_2563219_+,NA|105aa|down_3|NZ_CP019970.1_2564809_2565124_+,NA|165aa|down_4|NZ_CP019970.1_2565116_2565611_+,NA|105aa|down_5|NZ_CP019970.1_2565687_2566002_+	NA|283aa|up_9|NZ_CP019970.1_2549709_2550558_+	cd13597, PBP2_lipoprotein_Tp32, The substrate-binding domain of the 32-kilodalton lipoprotein (Tp32) from Treponema pallidum binds L-methionine; the type 2 periplasmic-binding protein fold	NA|258aa|up_8|NZ_CP019970.1_2550754_2551528_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|429aa|up_7|NZ_CP019970.1_2551540_2552827_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|412aa|up_6|NZ_CP019970.1_2552823_2554059_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|157aa|up_5|NZ_CP019970.1_2554045_2554516_+	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family	NA|464aa|up_4|NZ_CP019970.1_2554520_2555912_+	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|381aa|up_3|NZ_CP019970.1_2556009_2557152_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|266aa|up_2|NZ_CP019970.1_2557202_2558000_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|100aa|up_1|NZ_CP019970.1_2558222_2558522_+	pfam12728, HTH_17, Helix-turn-helix domain	NA|261aa|up_0|NZ_CP019970.1_2558738_2559521_+	NA	NA|66aa|down_0|NZ_CP019970.1_2562406_2562604_+	NA	NA|204aa|down_1|NZ_CP019970.1_2562607_2563219_+	NA	NA|464aa|down_2|NZ_CP019970.1_2563203_2564595_+	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain	NA|105aa|down_3|NZ_CP019970.1_2564809_2565124_+	NA	NA|165aa|down_4|NZ_CP019970.1_2565116_2565611_+	NA	NA|105aa|down_5|NZ_CP019970.1_2565687_2566002_+	NA	NA|370aa|down_6|NZ_CP019970.1_2566399_2567509_+	COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]	NA|745aa|down_7|NZ_CP019970.1_2567501_2569736_+	cd04847, Peptidases_S8_Subtilisin_like_2, Peptidase S8 family domain in Subtilisin-like proteins	NA|381aa|down_8|NZ_CP019970.1_2570136_2571279_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|245aa|down_9|NZ_CP019970.1_2571317_2572052_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins
GCF_002024245.1_ASM202424v1	NZ_CP019971	Enterococcus faecium isolate 2014-VREF-114 plasmid p114-1 sequence	1	29553-29645	1	CRISPRCasFinder	no	c2c10_CAS-V-U3	c2c10_CAS-V-U3,cas14j	Type V-U3	CATGCTGTTTTATATAGTTCTAAAAC	26	0	0	NA	NA	NA	1	1	TypeV-U3	cas2,DinG,cas3,DEDDh,cas14j,RT,csa3,c2c10_CAS-V-U3	NA|126aa|up_6|NZ_CP019971.1_20597_20975_-,NA|116aa|up_2|NZ_CP019971.1_26137_26485_-,c2c10_CAS-V-U3|409aa|down_0|NZ_CP019971.1_30230_31457_-,NA|67aa|down_1|NZ_CP019971.1_31590_31791_-,NA|298aa|down_3|NZ_CP019971.1_33957_34851_-,NA|107aa|down_4|NZ_CP019971.1_35105_35426_-,NA|373aa|down_5|NZ_CP019971.1_35458_36577_-,NA|265aa|down_6|NZ_CP019971.1_36605_37400_-,NA|324aa|down_7|NZ_CP019971.1_37409_38381_-,NA|86aa|down_8|NZ_CP019971.1_38500_38758_-,NA|77aa|down_9|NZ_CP019971.1_38760_38991_-	NA|41aa|up_9|NZ_CP019971.1_18624_18747_+	pfam08253, Leader_Erm, Erm Leader peptide	NA|244aa|up_8|NZ_CP019971.1_18804_19536_+	pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase	NA|261aa|up_7|NZ_CP019971.1_19661_20444_-	PRK13746, PRK13746, aminoglycoside resistance protein; Provisional	NA|126aa|up_6|NZ_CP019971.1_20597_20975_-	NA	NA|631aa|up_5|NZ_CP019971.1_20981_22874_-	cd01187, INT_tnpB_C_Tn554, Putative Transposase B from transposon Tn554, C-terminal catalytic domain	NA|362aa|up_4|NZ_CP019971.1_22870_23956_-	cd01186, INT_tnpA_C_Tn554, Putative Transposase A from transposon Tn554, C-terminal catalytic domain	NA|214aa|up_3|NZ_CP019971.1_24074_24716_-	cd08071, MPN_DUF2466, Mov34/MPN/PAD-1 family	NA|116aa|up_2|NZ_CP019971.1_26137_26485_-	NA	NA|442aa|up_1|NZ_CP019971.1_26477_27803_-	cd01700, PolY_Pol_V_umuC, umuC subunit of DNA Polymerase V	NA|434aa|up_0|NZ_CP019971.1_28020_29322_+	pfam01610, DDE_Tnp_ISL3, Transposase	c2c10_CAS-V-U3|409aa|down_0|NZ_CP019971.1_30230_31457_-	NA	NA|67aa|down_1|NZ_CP019971.1_31590_31791_-	NA	NA|543aa|down_2|NZ_CP019971.1_32309_33938_-	pfam07926, TPR_MLP1_2, TPR/MLP1/MLP2-like protein	NA|298aa|down_3|NZ_CP019971.1_33957_34851_-	NA	NA|107aa|down_4|NZ_CP019971.1_35105_35426_-	NA	NA|373aa|down_5|NZ_CP019971.1_35458_36577_-	NA	NA|265aa|down_6|NZ_CP019971.1_36605_37400_-	NA	NA|324aa|down_7|NZ_CP019971.1_37409_38381_-	NA	NA|86aa|down_8|NZ_CP019971.1_38500_38758_-	NA	NA|77aa|down_9|NZ_CP019971.1_38760_38991_-	NA
GCF_002024245.1_ASM202424v1	NZ_CP019971	Enterococcus faecium isolate 2014-VREF-114 plasmid p114-1 sequence	2	29951-30123	1,2	PILER-CR,CRISPRCasFinder	no	c2c10_CAS-V-U3	c2c10_CAS-V-U3,cas14j	Type V-U3	TTATTTGAGAAACATGCTGTTTTATATAGTTCTAAAACCTC,CATGCTGTTTTATATAGTTCTAAAAC	41,26	1	1	29992-30019	NZ_CP019971.1_112917-112944	NA:NA	2,2	2	TypeV-U3	cas2,DinG,cas3,DEDDh,cas14j,RT,csa3,c2c10_CAS-V-U3	NA|126aa|up_6|NZ_CP019971.1_20597_20975_-,NA|116aa|up_2|NZ_CP019971.1_26137_26485_-,c2c10_CAS-V-U3|409aa|down_0|NZ_CP019971.1_30230_31457_-,NA|67aa|down_1|NZ_CP019971.1_31590_31791_-,NA|298aa|down_3|NZ_CP019971.1_33957_34851_-,NA|107aa|down_4|NZ_CP019971.1_35105_35426_-,NA|373aa|down_5|NZ_CP019971.1_35458_36577_-,NA|265aa|down_6|NZ_CP019971.1_36605_37400_-,NA|324aa|down_7|NZ_CP019971.1_37409_38381_-,NA|86aa|down_8|NZ_CP019971.1_38500_38758_-,NA|77aa|down_9|NZ_CP019971.1_38760_38991_-	NA|41aa|up_9|NZ_CP019971.1_18624_18747_+	pfam08253, Leader_Erm, Erm Leader peptide	NA|244aa|up_8|NZ_CP019971.1_18804_19536_+	pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase	NA|261aa|up_7|NZ_CP019971.1_19661_20444_-	PRK13746, PRK13746, aminoglycoside resistance protein; Provisional	NA|126aa|up_6|NZ_CP019971.1_20597_20975_-	NA	NA|631aa|up_5|NZ_CP019971.1_20981_22874_-	cd01187, INT_tnpB_C_Tn554, Putative Transposase B from transposon Tn554, C-terminal catalytic domain	NA|362aa|up_4|NZ_CP019971.1_22870_23956_-	cd01186, INT_tnpA_C_Tn554, Putative Transposase A from transposon Tn554, C-terminal catalytic domain	NA|214aa|up_3|NZ_CP019971.1_24074_24716_-	cd08071, MPN_DUF2466, Mov34/MPN/PAD-1 family	NA|116aa|up_2|NZ_CP019971.1_26137_26485_-	NA	NA|442aa|up_1|NZ_CP019971.1_26477_27803_-	cd01700, PolY_Pol_V_umuC, umuC subunit of DNA Polymerase V	NA|434aa|up_0|NZ_CP019971.1_28020_29322_+	pfam01610, DDE_Tnp_ISL3, Transposase	c2c10_CAS-V-U3|409aa|down_0|NZ_CP019971.1_30230_31457_-	NA	NA|67aa|down_1|NZ_CP019971.1_31590_31791_-	NA	NA|543aa|down_2|NZ_CP019971.1_32309_33938_-	pfam07926, TPR_MLP1_2, TPR/MLP1/MLP2-like protein	NA|298aa|down_3|NZ_CP019971.1_33957_34851_-	NA	NA|107aa|down_4|NZ_CP019971.1_35105_35426_-	NA	NA|373aa|down_5|NZ_CP019971.1_35458_36577_-	NA	NA|265aa|down_6|NZ_CP019971.1_36605_37400_-	NA	NA|324aa|down_7|NZ_CP019971.1_37409_38381_-	NA	NA|86aa|down_8|NZ_CP019971.1_38500_38758_-	NA	NA|77aa|down_9|NZ_CP019971.1_38760_38991_-	NA
GCF_002024245.1_ASM202424v1	NZ_CP019976	Enterococcus faecium isolate 2014-VREF-114 plasmid p114-6 sequence	1	16509-16609	1	CRISPRCasFinder	no			Orphan	AAAGACCCCTAAAAACAGACAAAAAGACCCCCAAAA	36	1	1	16545-16573	NZ_CP019976.1_21396-21424	NA	1	1	Orphan	cas2,DinG,cas3,DEDDh,cas14j,RT,csa3,c2c10_CAS-V-U3	NA|142aa|up_9|NZ_CP019976.1_3214_3640_-,NA|139aa|up_8|NZ_CP019976.1_4293_4710_-,NA|94aa|up_7|NZ_CP019976.1_4711_4993_-,NA|142aa|up_6|NZ_CP019976.1_8005_8431_-,NA|94aa|up_5|NZ_CP019976.1_9502_9784_-,NA|166aa|up_4|NZ_CP019976.1_10159_10657_-,NA|142aa|up_2|NZ_CP019976.1_12795_13221_-,NA|139aa|up_1|NZ_CP019976.1_13873_14290_-,NA|166aa|up_0|NZ_CP019976.1_14949_15447_-,NA|142aa|down_1|NZ_CP019976.1_27208_27634_-,NA|140aa|down_2|NZ_CP019976.1_31973_32393_-	NA|142aa|up_9|NZ_CP019976.1_3214_3640_-	NA	NA|139aa|up_8|NZ_CP019976.1_4293_4710_-	NA	NA|94aa|up_7|NZ_CP019976.1_4711_4993_-	NA	NA|142aa|up_6|NZ_CP019976.1_8005_8431_-	NA	NA|94aa|up_5|NZ_CP019976.1_9502_9784_-	NA	NA|166aa|up_4|NZ_CP019976.1_10159_10657_-	NA	NA|326aa|up_3|NZ_CP019976.1_10666_11644_-	pfam01051, Rep_3, Initiator Replication protein	NA|142aa|up_2|NZ_CP019976.1_12795_13221_-	NA	NA|139aa|up_1|NZ_CP019976.1_13873_14290_-	NA	NA|166aa|up_0|NZ_CP019976.1_14949_15447_-	NA	NA|326aa|down_0|NZ_CP019976.1_25078_26056_-	pfam01051, Rep_3, Initiator Replication protein	NA|142aa|down_1|NZ_CP019976.1_27208_27634_-	NA	NA|140aa|down_2|NZ_CP019976.1_31973_32393_-	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
GCF_002024245.1_ASM202424v1	NZ_CP019976	Enterococcus faecium isolate 2014-VREF-114 plasmid p114-6 sequence	2	30912-31011	2	CRISPRCasFinder	no			Orphan	AAAGACCCCTAAAAACAGACAAAAAGACCCCCAAAA	36	0	0	NA	NA	NA	1	1	Orphan	cas2,DinG,cas3,DEDDh,cas14j,RT,csa3,c2c10_CAS-V-U3	NA|94aa|up_9|NZ_CP019976.1_4711_4993_-,NA|142aa|up_8|NZ_CP019976.1_8005_8431_-,NA|94aa|up_7|NZ_CP019976.1_9502_9784_-,NA|166aa|up_6|NZ_CP019976.1_10159_10657_-,NA|142aa|up_4|NZ_CP019976.1_12795_13221_-,NA|139aa|up_3|NZ_CP019976.1_13873_14290_-,NA|166aa|up_2|NZ_CP019976.1_14949_15447_-,NA|142aa|up_0|NZ_CP019976.1_27208_27634_-,NA|140aa|down_0|NZ_CP019976.1_31973_32393_-	NA|94aa|up_9|NZ_CP019976.1_4711_4993_-	NA	NA|142aa|up_8|NZ_CP019976.1_8005_8431_-	NA	NA|94aa|up_7|NZ_CP019976.1_9502_9784_-	NA	NA|166aa|up_6|NZ_CP019976.1_10159_10657_-	NA	NA|326aa|up_5|NZ_CP019976.1_10666_11644_-	pfam01051, Rep_3, Initiator Replication protein	NA|142aa|up_4|NZ_CP019976.1_12795_13221_-	NA	NA|139aa|up_3|NZ_CP019976.1_13873_14290_-	NA	NA|166aa|up_2|NZ_CP019976.1_14949_15447_-	NA	NA|326aa|up_1|NZ_CP019976.1_25078_26056_-	pfam01051, Rep_3, Initiator Replication protein	NA|142aa|up_0|NZ_CP019976.1_27208_27634_-	NA	NA|140aa|down_0|NZ_CP019976.1_31973_32393_-	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
