The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP019957	Bordetella pertussis strain Pelita III chromosome, complete genome	4105522	0	71085	4105522	transposase,tRNA	Natrialba_phage(12.5%)	60	NA	NA
WP_010929569.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_003806883.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|20771_21947_+	membrane protein	NA	NA	NA	NA	NA
WP_010929576.1|24352_25459_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|26470_27286_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929579.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929581.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023995008.1|32163_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814400.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003814410.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_005013747.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929588.1|44712_45663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815267.1|46162_46798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|46769_47006_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|47133_48027_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|49196_50444_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|50440_51055_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|51190_52141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|52183_53440_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|54671_55406_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|55411_56002_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|56026_56716_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|56712_57474_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|57553_58453_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|58546_59497_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|60297_61524_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|61523_61943_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|62126_63068_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929598.1|63491_64328_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929599.1|64522_65104_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_019248465.1|65116_65434_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|65537_66596_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|66630_67902_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|68531_69713_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|70134_71085_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP019957	Bordetella pertussis strain Pelita III chromosome, complete genome	4105522	78683	124171	4105522	tRNA,transposase	Planktothrix_phage(25.0%)	44	NA	NA
WP_010929591.1|78683_79634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|79708_80653_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|80649_82524_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|83871_84576_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|84572_85679_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|85940_86534_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|86530_87718_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|87780_89040_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|89063_90152_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|90159_91260_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|91263_91839_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|91842_92895_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|93025_94033_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|94034_95321_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|95337_95493_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|95517_96321_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|96317_97184_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_076879533.1|97252_98389_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|98388_99228_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|100160_100763_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|100792_101446_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|101578_102835_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_019248163.1|102837_103782_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|103857_104133_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|104140_104803_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|104864_105866_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|105880_106429_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|106486_107383_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|107379_108441_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|108476_109427_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|110326_111520_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|111601_112231_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|112292_112976_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|112985_114668_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|114955_115303_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|115393_115711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929632.1|115993_117010_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|117085_117886_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|117882_118758_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|118768_120061_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|120103_121144_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|121249_122071_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|122171_123122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|123220_124171_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP019957	Bordetella pertussis strain Pelita III chromosome, complete genome	4105522	137255	209779	4105522	tRNA,transposase	Bacillus_phage(16.67%)	60	NA	NA
WP_005012067.1|137255_138206_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302766.1|138192_138336_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815155.1|138624_140133_-	threonine ammonia-lyase, biosynthetic	NA	NA	NA	NA	NA
WP_019247146.1|140879_144842_+	FAD/FMN-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929644.1|144894_145677_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929645.1|145764_146988_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929646.1|146971_147904_-	alpha/beta hydrolase fold domain-containing protein	NA	NA	NA	NA	NA
WP_003817676.1|147909_148722_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_033446330.1|150034_150958_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815135.1|151124_151907_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929648.1|152673_153654_-	biotin-dependent carboxyltransferase	NA	NA	NA	NA	NA
WP_010929649.1|153650_154379_-	5-oxoprolinase subunit PxpB	NA	NA	NA	NA	NA
WP_003815126.1|154403_154835_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929650.1|154936_155812_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929651.1|155864_157085_-	phosphoglycerate dehydrogenase	NA	A0A1V0SBV6	Catovirus	42.6	3.2e-91
WP_010929652.1|157168_157630_-	DUF411 domain-containing protein	NA	NA	NA	NA	NA
WP_010929653.1|157735_159133_-	heavy metal sensor histidine kinase	NA	NA	NA	NA	NA
WP_010929654.1|159129_159807_-	heavy metal response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.2	1.5e-29
WP_010929655.1|159862_161173_-	phosphate regulon sensor histidine kinase PhoR	NA	A0A1V0SGX0	Hokovirus	25.5	6.2e-16
WP_003815113.1|161184_161883_-	phosphate regulon transcriptional regulatory protein PhoB	NA	W8CYM9	Bacillus_phage	37.1	8.6e-33
WP_003815111.1|162046_162823_+	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA	NA
WP_010929656.1|162988_164011_+	Tim44 domain-containing protein	NA	NA	NA	NA	NA
WP_023853232.1|164239_164875_+	SCP-2 sterol transfer family protein	NA	NA	NA	NA	NA
WP_010929658.1|164871_166434_+	ubiquinone biosynthesis regulatory protein kinase UbiB	NA	A0A2N9QVT9	Dishui_lake_phycodnavirus	28.7	1.0e-33
WP_005015810.1|166992_167943_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|169386_170289_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|170266_170896_-	LemA family protein	NA	NA	NA	NA	NA
WP_029443820.1|171226_172609_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
WP_010929661.1|172642_173272_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|173320_174928_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|174952_175636_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|175717_176194_-	bacterioferritin	NA	NA	NA	NA	NA
WP_127908347.1|176234_176414_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|176400_177351_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|178466_178994_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|179085_179901_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|179961_180696_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|180733_182812_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|183061_183334_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486043.1|183432_184521_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|184524_186429_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_010929669.1|186425_190124_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|190184_190748_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|190755_191178_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|191205_191625_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|191653_192100_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|192226_192724_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|192878_195149_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|195197_196430_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|196528_197479_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879535.1|197524_198217_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
WP_010929674.1|198213_199107_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|199501_200602_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|200683_201058_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|201117_203982_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|204126_204867_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|204936_206148_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|206176_207145_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|207758_208709_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|208828_209779_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP019957	Bordetella pertussis strain Pelita III chromosome, complete genome	4105522	217711	333593	4105522	tRNA,protease,transposase	uncultured_Caudovirales_phage(12.5%)	108	NA	NA
WP_010929686.1|217711_218662_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|218760_219711_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929687.1|219735_220635_-	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_010929688.1|220789_221338_+	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929689.1|221376_222096_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929690.1|222167_225110_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_033446404.1|225703_228499_+|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929692.1|228956_229889_+	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929693.1|230000_231350_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929694.1|231381_232107_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929695.1|232157_233009_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929696.1|233138_233825_+	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_003819086.1|233824_234469_+	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_003807674.1|234525_234801_+	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003807672.1|234826_235123_+	YciI family protein	NA	NA	NA	NA	NA
WP_003819081.1|235123_235948_+	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_010929698.1|235944_236994_+	cyclase	NA	NA	NA	NA	NA
WP_010929699.1|237098_237422_-	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_005013747.1|237578_238529_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302767.1|238515_238689_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929700.1|238627_239425_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|240374_240785_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|241806_242550_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|242593_243637_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|243807_245910_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|247320_248277_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|248295_248787_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|248783_250139_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|250139_250838_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|250834_251536_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|251788_252838_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|252943_253885_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|253881_255771_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|255857_256496_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|256638_258024_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|257954_258491_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|258642_260034_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|260050_261031_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|261166_262150_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|262214_263114_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|263220_264975_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|264982_266107_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|266120_267101_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|267831_268782_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|269341_269887_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|269970_271590_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|271605_272760_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|272773_272899_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|272895_274647_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|274643_276323_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_085964336.1|276358_276934_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
WP_010929717.1|278076_278355_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|279398_280349_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879590.1|280335_280551_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|280626_280788_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|280795_280936_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|281454_281904_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|281913_282525_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_019247426.1|282683_283538_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|283557_284940_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|285004_285646_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|285785_286244_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|286268_287045_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_010929722.1|287098_288235_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|288231_289182_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807705.1|289280_289907_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_003807706.1|289929_290856_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003819100.1|290864_292451_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929723.1|292447_293452_-	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003807710.1|293651_294512_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|294543_295545_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003819104.1|295615_296425_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003819105.1|296502_298362_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_010929725.1|298490_299693_-	MFS transporter	NA	NA	NA	NA	NA
WP_004566082.1|299806_300688_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004566083.1|302190_302751_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_005013747.1|302810_303761_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302768.1|303747_303906_-	hypothetical protein	NA	NA	NA	NA	NA
WP_111735998.1|303952_304240_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|304328_305279_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929727.1|305275_306274_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815019.1|306316_306820_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929728.1|306823_307714_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003815015.1|307936_309100_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003815013.1|309196_310117_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815011.1|310120_311086_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815010.1|311082_311877_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	23.5	2.6e-09
WP_010929729.1|311870_312575_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	1.1e-16
WP_010929730.1|315938_316802_+	enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010929731.1|316804_317974_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814996.1|318014_319664_+	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	31.2	2.6e-56
WP_003814993.1|319665_320100_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814990.1|320124_320526_+	RidA family protein	NA	NA	NA	NA	NA
WP_010929732.1|320619_322245_-	DUF342 domain-containing protein	NA	NA	NA	NA	NA
WP_010929733.1|322484_323768_-	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_003814984.1|323784_324438_-	thiamine phosphate synthase	NA	NA	NA	NA	NA
WP_010929734.1|324434_325283_-	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003814980.1|325399_325564_+	rubredoxin	NA	NA	NA	NA	NA
WP_019248876.1|325579_326257_+	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_010929735.1|326249_326651_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_003820560.1|326664_327618_+	aspartate carbamoyltransferase	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	35.8	2.5e-30
WP_010929736.1|327614_328790_+	dihydroorotase	NA	NA	NA	NA	NA
WP_010929737.1|328909_329650_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929738.1|329686_330520_-	symmetrical bis(5'-nucleosyl)-tetraphosphatase	NA	NA	NA	NA	NA
WP_023852939.1|330516_331785_-	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
WP_003814960.1|331791_332520_-	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
WP_153302769.1|332506_332656_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|332642_333593_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP019957	Bordetella pertussis strain Pelita III chromosome, complete genome	4105522	393116	447584	4105522	transposase	Heterosigma_akashiwo_virus(14.29%)	48	NA	NA
WP_005012067.1|393116_394067_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|394155_395070_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|395066_395726_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|395815_396739_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|396744_397200_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|397196_398300_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_077274092.1|398219_398528_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|398487_400107_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|400103_401162_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|401291_401786_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|401878_402856_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|403051_404257_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|404253_405765_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|405780_407094_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|407284_407464_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|407873_408608_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|411052_412003_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|412134_412533_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|412943_413414_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|413502_413847_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|413946_415347_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|417135_417654_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|417764_418520_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|418715_419948_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|419940_420726_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|420792_421764_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|421774_422752_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|422877_424050_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|424076_425105_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|425170_426364_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|428145_429096_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929794.1|429194_430100_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929795.1|430275_430479_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	58.2	5.8e-14
WP_010929796.1|430989_431430_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029443819.1|431459_432095_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929798.1|432204_433845_-	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929799.1|433841_435305_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929800.1|435335_438722_-	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929801.1|438863_439268_-	RidA family protein	NA	NA	NA	NA	NA
WP_010929802.1|439411_440398_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247316.1|440384_440666_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929803.1|441411_442644_-	dehydratase	NA	NA	NA	NA	NA
WP_077274093.1|442643_443117_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929805.1|443269_444232_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929806.1|444209_445463_-	CoA transferase	NA	NA	NA	NA	NA
WP_023995938.1|445406_445598_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|445584_446535_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|446633_447584_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP019957	Bordetella pertussis strain Pelita III chromosome, complete genome	4105522	486294	528249	4105522	integrase,transposase	Bacillus_virus(11.11%)	40	508654:508671	533281:533298
WP_005012067.1|486294_487245_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929827.1|487361_488429_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_010929828.1|488504_491633_-	Rne/Rng family ribonuclease	NA	NA	NA	NA	NA
WP_023853155.1|492140_493106_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_010929830.1|493108_493780_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_010929831.1|493936_494896_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA	NA
WP_003821340.1|494903_495566_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA	NA
WP_005013747.1|495562_496513_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995443.1|496499_496640_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929833.1|498069_498915_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929834.1|499002_500166_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929835.1|500584_501556_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929836.1|501594_503022_-	amidase	NA	NA	NA	NA	NA
WP_023853625.1|503141_503933_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929838.1|504051_506505_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_003816023.1|506599_507715_-	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.6e-41
WP_010929554.1|507711_509121_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
508654:508671	attL	CAGCGCCGCGGCGCGCGC	NA	NA	NA	NA
WP_003816025.1|509526_509661_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_003816026.1|509756_510128_+	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816027.1|510124_510397_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_010927254.1|510445_512137_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_005012067.1|512367_513318_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929840.1|513775_514699_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814626.1|514707_515106_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929841.1|515347_517318_+	DUF3120 domain-containing protein	NA	NA	NA	NA	NA
WP_010929843.1|518804_519794_+|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
WP_010926403.1|519790_519991_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929844.1|519991_520111_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853043.1|520103_520466_-	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	47.9	1.8e-13
WP_010929846.1|520455_521643_-	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
WP_010929847.1|521676_522204_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929848.1|522261_522909_-	YqaJ viral recombinase family protein	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
WP_010929849.1|522905_523892_-	DNA recombinase	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
WP_010926410.1|523895_524078_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926411.1|524074_524452_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929850.1|524685_525153_-	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
WP_010929851.1|525188_526139_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010926414.1|526237_526480_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929852.1|526646_527288_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929853.1|527298_528249_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
533281:533298	attR	CAGCGCCGCGGCGCGCGC	NA	NA	NA	NA
>prophage 7
NZ_CP019957	Bordetella pertussis strain Pelita III chromosome, complete genome	4105522	655403	726233	4105522	tRNA,transposase	Acanthocystis_turfacea_Chlorella_virus(11.11%)	57	NA	NA
WP_005012067.1|655403_656354_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|658967_659918_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815668.1|659914_660322_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_019247835.1|660318_660987_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003815671.1|661605_662577_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815672.1|662683_663646_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929934.1|663764_665486_+	D-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_010929935.1|665529_666660_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929936.1|666673_667864_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929937.1|668044_669064_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929938.1|669196_670369_-	acetylornithine deacetylase	NA	NA	NA	NA	NA
WP_003815682.1|670361_671036_-	DUF1028 domain-containing protein	NA	NA	NA	NA	NA
WP_010929939.1|671046_671475_-	RidA family protein	NA	NA	NA	NA	NA
WP_003815690.1|671505_672780_-	SidA/IucD/PvdA family monooxygenase	NA	NA	NA	NA	NA
WP_010929940.1|673144_674128_+	oxidoreductase	NA	NA	NA	NA	NA
WP_010929941.1|674211_675156_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929942.1|675303_677445_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010929943.1|677444_678224_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815697.1|678622_679516_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929944.1|679579_680599_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929945.1|680655_681636_+	NAD(P)-dependent oxidoreductase	NA	M1IDV7	Acanthocystis_turfacea_Chlorella_virus	29.5	7.6e-11
WP_010929946.1|681833_683666_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	48.1	4.3e-156
WP_010929947.1|683815_684304_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_076879537.1|684325_685543_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_010929949.1|685539_687657_-	crotonase	NA	NA	NA	NA	NA
WP_010929950.1|687914_689717_+	DNA alkylation response protein	NA	NA	NA	NA	NA
WP_010929951.1|689798_690785_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929952.1|690836_693026_+	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010929953.1|693022_693820_+	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_010929954.1|693816_694653_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010929955.1|694672_697048_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|697146_698097_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929956.1|698195_699146_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929957.1|699868_701143_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_003807618.1|701229_702312_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929958.1|702322_703135_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|703171_703498_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_003807624.1|703502_704063_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_003819054.1|704303_705296_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929960.1|705314_706310_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023853194.1|706325_707702_+	FAD binding domain in molybdopterin dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929962.1|707694_710076_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_019247263.1|710092_710482_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_020699695.1|710608_710839_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|710943_711894_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929963.1|711992_712943_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_003815183.1|712939_713812_-	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929964.1|714742_716029_+	cytochrome c	NA	NA	NA	NA	NA
WP_010929965.1|716082_717009_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_003815179.1|717027_717492_-	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_003815177.1|718334_719126_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815175.1|719157_719778_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_010929967.1|719774_720404_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815172.1|720416_721025_-	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_003815171.1|721021_722011_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_010929968.1|722116_723331_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|725282_726233_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP019957	Bordetella pertussis strain Pelita III chromosome, complete genome	4105522	730133	780357	4105522	transposase,tRNA	Catovirus(33.33%)	43	NA	NA
WP_003807038.1|730133_731924_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_010929972.1|732036_732897_+	endonuclease	NA	NA	NA	NA	NA
WP_010929973.1|732893_734099_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929974.1|734095_734980_-	DMT family transporter	NA	NA	NA	NA	NA
WP_033446233.1|736496_736931_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_014905478.1|736893_737892_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852750.1|737878_738022_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814441.1|738051_738924_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|739264_739483_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_010929975.1|739522_740902_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|740943_742341_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|742380_744033_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|744036_744921_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|744920_745862_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|745940_747560_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|747726_748542_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|748609_749179_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|749179_750130_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|750784_751882_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|751915_753181_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_005012067.1|753338_754289_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|754532_755123_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|755138_757583_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|757702_758674_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|758805_759330_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|759289_760240_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|760461_762657_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|762729_763137_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_077068980.1|763084_763273_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|763259_764210_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807452.1|764325_764769_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010925762.1|764831_765626_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807457.1|765791_766928_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_003807459.1|766998_768132_-	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807460.1|768281_768542_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807462.1|768575_768887_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_010929987.1|769311_770460_+	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_010929988.1|770574_771540_+	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929989.1|771808_772675_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929990.1|772805_774854_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929991.1|774871_776869_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929992.1|776903_778241_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_077075908.1|778503_780357_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP019957	Bordetella pertussis strain Pelita III chromosome, complete genome	4105522	1049383	1161699	4105522	tRNA,holin,transposase	uncultured_Mediterranean_phage(17.65%)	100	NA	NA
WP_005012808.1|1049383_1050334_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1050432_1051173_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1051367_1053404_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1053421_1054432_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1054549_1055743_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1055772_1056546_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1056542_1057733_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1057758_1058697_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1058693_1061042_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_029443834.1|1061196_1061904_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1061941_1063075_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1063167_1063320_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1063351_1063900_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1063918_1064404_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1064581_1065520_+	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1065522_1065840_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1065885_1066830_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930140.1|1066850_1068326_-	inorganic phosphate transporter	NA	NA	NA	NA	NA
WP_010930141.1|1068510_1069161_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1069214_1069550_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1069546_1070407_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1070423_1070705_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1070778_1071042_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1071285_1072236_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1072534_1073272_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1073707_1074031_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1074065_1074626_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1074746_1075622_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1075634_1076582_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1076683_1076977_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1077003_1079061_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1079075_1079576_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1079649_1081356_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1082219_1083272_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1083324_1083714_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1083722_1084355_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010930147.1|1084454_1085471_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1086301_1087309_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1087305_1088949_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_023995116.1|1088945_1089848_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1089973_1090447_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1090436_1091459_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1091455_1092883_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930153.1|1093820_1094837_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1095168_1096104_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1096153_1098034_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1098100_1098445_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_005012808.1|1098589_1099540_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930155.1|1099638_1100775_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1100771_1101845_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1102002_1103439_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1103529_1104171_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010930158.1|1104506_1105523_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930159.1|1105855_1108588_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1108654_1110076_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1110339_1111056_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1111140_1111458_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1111498_1111912_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1111913_1112273_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1112315_1113860_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1113943_1114774_+	transglycosylase	NA	NA	NA	NA	NA
WP_010930164.1|1114808_1115963_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1116005_1116878_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930166.1|1116994_1119283_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1120489_1120954_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1120980_1121931_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|1122298_1123075_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1123119_1123977_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1123998_1125015_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_010930170.1|1125149_1126190_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	39.9	3.0e-50
WP_010930171.1|1126384_1128466_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1128701_1130195_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1130425_1131220_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1131440_1132799_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1132795_1133638_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1133656_1135543_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930175.1|1135780_1136413_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1136431_1137034_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_023995509.1|1137037_1137199_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|1137185_1138136_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1138234_1139185_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930177.1|1139987_1140788_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812707.1|1140831_1141818_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1141957_1142971_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_010930179.1|1142967_1143918_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1144030_1144489_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1144525_1145839_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1145856_1146228_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_010930181.1|1146224_1147688_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_003812697.1|1147780_1148557_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_076879621.1|1148538_1151418_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1151600_1152551_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1152718_1153543_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1153542_1154421_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1155325_1156441_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930187.1|1156448_1157264_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
WP_010930188.1|1157260_1159126_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1159204_1159837_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1159833_1160136_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1160178_1161699_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 10
NZ_CP019957	Bordetella pertussis strain Pelita III chromosome, complete genome	4105522	1179269	1232199	4105522	tRNA,transposase	Erysipelothrix_phage(50.0%)	40	NA	NA
WP_023853221.1|1179269_1181066_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1181065_1182034_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1182103_1182949_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1183016_1183571_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1183617_1184568_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1184666_1185299_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1185471_1187754_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1187908_1190605_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1190730_1191219_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1193629_1196500_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1196545_1197760_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1197989_1199417_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_019248962.1|1199457_1200606_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1200618_1201377_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1201464_1202367_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1202363_1203314_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1203443_1204427_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1204481_1205204_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930208.1|1205671_1206622_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930209.1|1207343_1207877_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003813612.1|1207869_1208832_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003813609.1|1208925_1211403_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003813607.1|1211519_1211828_+	DUF3649 domain-containing protein	NA	NA	NA	NA	NA
WP_010930210.1|1213472_1213799_+	DUF3325 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1213947_1214898_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930211.1|1214907_1216263_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1216343_1218719_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1218883_1220959_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_003813594.1|1221020_1221821_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1221922_1222885_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1222872_1223628_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1223735_1225373_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1225440_1226178_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1226280_1226856_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1227028_1227565_+	membrane protein	NA	NA	NA	NA	NA
WP_003813580.1|1227567_1227912_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1227927_1228773_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1228811_1230191_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1230268_1231150_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1231248_1232199_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP019957	Bordetella pertussis strain Pelita III chromosome, complete genome	4105522	1323277	1388585	4105522	transposase,tRNA	Bacillus_virus(18.18%)	59	NA	NA
WP_003810552.1|1323277_1324012_+|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_003818637.1|1324028_1325849_+	translational GTPase TypA	NA	NA	NA	NA	NA
WP_010928248.1|1325919_1326645_-	toxin	NA	NA	NA	NA	NA
WP_003818640.1|1326641_1327046_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810560.1|1327197_1327770_-	TIGR00730 family Rossman fold protein	NA	F4YCQ1	Synechococcus_phage	26.8	1.7e-07
WP_010930273.1|1327879_1330594_+	DNA polymerase I	NA	B6V2J7	Bacillus_phage	30.7	5.0e-68
WP_010930274.1|1330704_1331541_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010930275.1|1331595_1332384_+	carboxymethylenebutenolidase	NA	NA	NA	NA	NA
WP_010930276.1|1332417_1334079_-	Na/Pi cotransporter family protein	NA	NA	NA	NA	NA
WP_019247247.1|1334240_1335638_+	L-serine ammonia-lyase	NA	NA	NA	NA	NA
WP_003810571.1|1335775_1336435_-	epoxyqueuosine reductase QueH	NA	NA	NA	NA	NA
WP_050865593.1|1336470_1339296_-	bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase	NA	NA	NA	NA	NA
WP_003810577.1|1343069_1344326_-	transcription termination factor Rho	NA	NA	NA	NA	NA
WP_023852918.1|1344438_1344765_-	thioredoxin TrxA	NA	A0A1J0GW78	Streptomyces_phage	46.2	1.3e-18
WP_047122788.1|1345006_1347019_+	type IIA DNA topoisomerase subunit B	NA	G3M9Z3	Bacillus_virus	35.6	3.3e-93
WP_010930280.1|1347018_1347627_+	YcxB family protein	NA	NA	NA	NA	NA
WP_010930281.1|1347644_1349960_+	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	31.5	4.5e-78
WP_010930282.1|1349962_1351177_+	DUF418 domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|1351173_1352124_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302774.1|1352110_1352248_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930283.1|1352892_1353531_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1354420_1354867_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1354948_1355650_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1355650_1356418_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1356414_1357653_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1357652_1358579_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1358681_1359797_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1359812_1360763_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_124740682.1|1360749_1360992_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930287.1|1361116_1361698_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1361694_1362528_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1362738_1364052_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1364228_1365110_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1365129_1365981_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1366033_1367122_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1367232_1368360_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1368594_1369206_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_077069213.1|1369304_1370255_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1370353_1371304_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929584.1|1371402_1372353_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1372574_1372952_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1373099_1373597_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1373593_1374121_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1374254_1375070_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1375082_1376264_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1376311_1377205_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1377331_1377802_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1377927_1378755_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1378783_1379560_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_003811307.1|1379556_1379850_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1379846_1380311_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_077274085.1|1380322_1381108_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1381133_1381634_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1381716_1382895_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1384522_1384858_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1385045_1386494_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1386551_1386896_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1387002_1387542_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1387634_1388585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP019957	Bordetella pertussis strain Pelita III chromosome, complete genome	4105522	1416700	1483200	4105522	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_010930208.1|1416700_1417651_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1417716_1417896_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930309.1|1418012_1418735_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1418754_1419900_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010929588.1|1420807_1421758_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811370.1|1421945_1423148_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_003811372.1|1423144_1423903_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811375.1|1424296_1424929_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930311.1|1425884_1428485_+	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_010930312.1|1428472_1431892_-	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930313.1|1431899_1432805_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811381.1|1432943_1433522_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930314.1|1433518_1434430_+	CoA ester lyase	NA	NA	NA	NA	NA
WP_010930315.1|1434443_1435124_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930316.1|1435325_1437365_+	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_014486069.1|1437383_1438370_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930317.1|1438395_1439193_+	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_003811389.1|1439189_1440383_+	CoA transferase	NA	NA	NA	NA	NA
WP_003811391.1|1440379_1441342_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811393.1|1441359_1442400_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811396.1|1442387_1442996_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930318.1|1444584_1445580_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811400.1|1445599_1446778_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_003811401.1|1446788_1447706_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_010930208.1|1447761_1448712_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812022.1|1448810_1449581_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_003812020.1|1449577_1450258_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930319.1|1450324_1451113_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930320.1|1451359_1452376_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930321.1|1452681_1453836_+	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_003817170.1|1458341_1458824_-	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_003817172.1|1458841_1459132_-	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_010930322.1|1459258_1459969_-	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_010930323.1|1460152_1460560_+	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_003817176.1|1460572_1460992_+	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930324.1|1461039_1461744_+	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817180.1|1461809_1463231_+	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_003817181.1|1463269_1464034_+	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_010930325.1|1464077_1464863_+	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_010930326.1|1464862_1465552_+	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930327.1|1465554_1466688_+	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930328.1|1466705_1467728_+	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930329.1|1467797_1469444_+	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930330.1|1469477_1471010_+	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930331.1|1471088_1472909_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930332.1|1473029_1474649_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_014486070.1|1474827_1476270_+	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010929632.1|1476486_1477503_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930333.1|1477549_1478338_-	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_003811859.1|1478360_1478630_-	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_015041547.1|1478646_1479438_-	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811855.1|1479449_1479791_-	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930335.1|1479801_1480302_-	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811852.1|1480294_1481305_-	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_003811850.1|1481307_1481880_-	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_005012067.1|1482249_1483200_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP019957	Bordetella pertussis strain Pelita III chromosome, complete genome	4105522	1525480	1584752	4105522	tRNA,transposase	Bacillus_phage(25.0%)	55	NA	NA
WP_005012067.1|1525480_1526431_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1526548_1527475_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1527540_1528698_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1528678_1529146_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_003811752.1|1529211_1529646_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1529635_1529986_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1530182_1531337_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1531333_1532506_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1532553_1533447_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1533492_1533930_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1533989_1534679_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1534688_1535639_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1535737_1536688_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003819864.1|1536787_1537771_-	transaldolase	NA	H6WFR1	Cyanophage	29.2	5.9e-11
WP_010930365.1|1538033_1539131_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.2	5.3e-53
WP_010930366.1|1539141_1542384_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_003809593.1|1543405_1544050_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930367.1|1544060_1544960_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809599.1|1545007_1546093_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930368.1|1546089_1547784_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_023996304.1|1547817_1547976_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1547962_1548913_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247209.1|1549054_1549357_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247210.1|1549372_1550425_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003820487.1|1550466_1551528_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_010930369.1|1551561_1552398_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003812685.1|1552407_1552950_-	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930370.1|1552963_1554256_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_077274082.1|1554252_1554861_-	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_004567450.1|1554998_1556096_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_003820494.1|1556102_1556663_+	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_010930372.1|1556659_1557340_+	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_029443766.1|1557336_1559454_+	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
WP_010930374.1|1559450_1560080_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853518.1|1560231_1560441_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247523.1|1560455_1563425_+	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_003812666.1|1564059_1564293_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930376.1|1564305_1565463_+	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_004567447.1|1565485_1565860_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930377.1|1565893_1567009_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930378.1|1567908_1568613_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_004567445.1|1568609_1569428_+	solute-binding protein	NA	NA	NA	NA	NA
WP_023853504.1|1569681_1571115_+	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_010930380.1|1571129_1571780_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930381.1|1571861_1572938_+	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930382.1|1573124_1574255_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_023853502.1|1574305_1576009_+	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930384.1|1576012_1576825_+|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_014486072.1|1576969_1578064_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930386.1|1578275_1578905_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930387.1|1578907_1580575_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930388.1|1580589_1581246_+	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_076879548.1|1581725_1582676_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|1582707_1583805_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_005013747.1|1583801_1584752_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP019957	Bordetella pertussis strain Pelita III chromosome, complete genome	4105522	1628358	1694689	4105522	transposase	Streptococcus_virus(11.11%)	58	NA	NA
WP_010929591.1|1628358_1629309_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1629315_1630428_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1631114_1632317_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1632520_1635181_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1635193_1638598_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_023995689.1|1639265_1641491_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1641537_1641864_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1641914_1642523_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1642621_1643572_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1643641_1644406_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1644402_1645002_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820094.1|1645105_1645951_-	putative membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1646016_1646643_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1646639_1647590_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879625.1|1647576_1647765_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930428.1|1647688_1648810_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1648790_1649792_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1649897_1651409_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1651405_1652710_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1652821_1653382_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1653649_1654204_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1654659_1654875_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1655129_1657727_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1657723_1658911_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1659571_1660186_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1660274_1661402_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_003809954.1|1661413_1662319_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_023994753.1|1663069_1663225_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1663211_1664162_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1664343_1665096_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1665164_1665824_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1665820_1666549_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1666561_1668841_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1668865_1669069_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_003811129.1|1669110_1669758_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	3.1e-13
WP_010930443.1|1669878_1670796_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1670792_1671506_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1671743_1672514_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1672518_1673118_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1673362_1674853_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1674911_1675196_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010928840.1|1675192_1675321_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930445.1|1675333_1675489_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1675761_1676688_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1676824_1677565_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1677731_1679108_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1679289_1680195_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1681846_1683649_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1683766_1684417_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_010929584.1|1684515_1685466_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1685487_1686708_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1686893_1688306_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1688369_1689437_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811170.1|1689433_1690924_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1690933_1691878_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1692037_1692736_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1692813_1693719_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1693738_1694689_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP019957	Bordetella pertussis strain Pelita III chromosome, complete genome	4105522	1730644	1786235	4105522	transposase	Tetraselmis_virus(25.0%)	49	NA	NA
WP_005012067.1|1730644_1731595_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|1732147_1733773_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|1733822_1734857_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|1734859_1736206_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930477.1|1736202_1737717_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1737707_1738718_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|1739191_1740133_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|1740141_1741110_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|1742649_1743618_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|1743795_1744785_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|1744831_1745590_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|1745779_1746517_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_153302777.1|1746467_1746629_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1746615_1747566_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|1747750_1748533_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|1748526_1749228_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|1749467_1750070_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_153302778.1|1751254_1751410_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1751396_1752347_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|1752343_1753900_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|1753892_1754666_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|1754724_1755675_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1755779_1756727_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1756780_1758595_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1758587_1759262_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1759391_1762466_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_010930491.1|1762479_1762779_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1763093_1763717_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1763960_1764830_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1764807_1765752_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930495.1|1765837_1766809_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930496.1|1766876_1767650_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1767646_1768843_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1768873_1769824_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1770045_1770735_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1770799_1771555_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1771606_1772599_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1772608_1773562_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1773677_1774640_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1776041_1776470_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1776466_1777417_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1777710_1778433_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1778871_1780059_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1780062_1780443_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1782162_1783134_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1783147_1783861_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1783865_1784783_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1784889_1785186_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1785284_1786235_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP019957	Bordetella pertussis strain Pelita III chromosome, complete genome	4105522	1793531	1912880	4105522	protease,tRNA,transposase	Moraxella_phage(10.34%)	109	NA	NA
WP_005013747.1|1793531_1794482_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247780.1|1794525_1795068_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930513.1|1795165_1796014_+	hydrolase	NA	NA	NA	NA	NA
WP_004568494.1|1796006_1796513_+|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930515.1|1796509_1797511_+	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_010930516.1|1797523_1798318_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930517.1|1798366_1800268_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003810992.1|1800264_1800888_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_003816541.1|1801014_1802139_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_076879556.1|1802456_1804124_+	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.6e-53
WP_010930519.1|1804279_1805056_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930520.1|1805140_1806139_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930521.1|1806135_1806909_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930522.1|1807893_1808844_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1808881_1809469_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1809486_1809870_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1811229_1812522_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1812656_1813697_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010930525.1|1813794_1814811_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|1815078_1815726_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1815851_1816610_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_077274094.1|1816684_1817374_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.2e-32
WP_003811022.1|1817391_1818276_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_004568488.1|1818272_1819052_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003816527.1|1819078_1819756_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1820044_1820797_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1820915_1822316_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1822339_1822738_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1822913_1823114_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1823252_1823981_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1824114_1825530_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1825533_1826397_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1826409_1827159_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|1827341_1829357_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_029443816.1|1829338_1829887_-	arylesterase	NA	NA	NA	NA	NA
WP_077274081.1|1829963_1830683_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.6	1.4e-22
WP_005012067.1|1830781_1831732_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1831880_1832219_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1832276_1832438_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1832469_1832670_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1832935_1835509_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930534.1|1835579_1838153_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1840679_1841168_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1841259_1842411_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1842464_1843286_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1843324_1844554_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1844682_1845123_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_076879558.1|1845067_1845247_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1845233_1846184_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930538.1|1846180_1846654_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446178.1|1846815_1847754_+	membrane protein	NA	NA	NA	NA	NA
WP_010930540.1|1847755_1848964_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_010930541.1|1849068_1849575_-	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930542.1|1849577_1852439_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930543.1|1852428_1853394_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_076879626.1|1853453_1855448_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_005012067.1|1855546_1856497_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041337087.1|1856595_1857546_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930545.1|1857542_1857917_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812548.1|1858178_1859387_+	aminotransferase	NA	NA	NA	NA	NA
WP_003812546.1|1859383_1861684_+	AAA family ATPase	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_010926400.1|1861736_1864349_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_010930546.1|1864708_1866634_-	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010930547.1|1866630_1867527_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|1867533_1868673_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_003812536.1|1868672_1869494_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930549.1|1871064_1871394_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_010930550.1|1871776_1873033_+	autotransporter Phg	NA	NA	NA	NA	NA
WP_003812526.1|1873107_1873389_+	membrane protein	NA	NA	NA	NA	NA
WP_003812524.1|1873430_1873751_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930551.1|1874057_1874261_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_010930552.1|1874344_1874911_+	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930553.1|1875256_1875457_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_076879561.1|1875568_1876147_-	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930555.1|1876325_1877636_+	trigger factor	NA	NA	NA	NA	NA
WP_003812508.1|1877638_1878292_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930556.1|1878396_1879701_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_010930557.1|1879889_1882343_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_019247936.1|1882466_1883417_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930559.1|1883644_1884868_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930560.1|1884933_1885905_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_029443773.1|1885917_1886373_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_015063637.1|1886386_1887190_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003812491.1|1887186_1887618_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930563.1|1887614_1888772_+	thiolase	NA	NA	NA	NA	NA
WP_010930564.1|1888793_1889570_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853213.1|1891734_1892451_+	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_003812478.1|1892443_1893085_+	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_019248063.1|1893119_1893851_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247934.1|1893868_1894081_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1894651_1895602_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812472.1|1897159_1897888_-	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	2.8e-10
WP_010930567.1|1897938_1899141_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930568.1|1899218_1901255_+	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_010930569.1|1901507_1901999_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_003812463.1|1902214_1902727_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930570.1|1902744_1903956_+	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812460.1|1903993_1904404_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_003812458.1|1904405_1904729_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812456.1|1904731_1905244_+	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_010930571.1|1905373_1907236_+	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812453.1|1907245_1907587_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_003812452.1|1907586_1907781_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_010930572.1|1907905_1908799_+	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_005013747.1|1908795_1909746_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1909870_1910680_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_153302779.1|1910735_1910894_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1910880_1911831_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929686.1|1911929_1912880_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP019957	Bordetella pertussis strain Pelita III chromosome, complete genome	4105522	2223308	2274945	4105522	transposase	Erysipelothrix_phage(33.33%)	47	NA	NA
WP_010930730.1|2223308_2224259_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2225129_2226002_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2226079_2227219_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_029443722.1|2227568_2228834_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2228839_2229367_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2229371_2230190_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2230189_2230912_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2230933_2231248_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_029443721.1|2231244_2232414_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2232444_2233320_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2233316_2234636_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930738.1|2234708_2235905_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2235915_2237403_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2239997_2240897_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2241034_2242000_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2242098_2243049_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879570.1|2243092_2243284_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930742.1|2243270_2244221_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812024.1|2244217_2244520_-	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
WP_003812026.1|2244679_2245084_+	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_010930743.1|2245076_2246303_+	NnrS family protein	NA	NA	NA	NA	NA
WP_003812030.1|2246299_2246746_+	membrane protein	NA	NA	NA	NA	NA
WP_003812032.1|2246815_2247598_+	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_010930744.1|2247639_2249145_+	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_047122807.1|2249430_2250225_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930745.1|2251701_2252523_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930746.1|2252541_2253396_-	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_003812044.1|2253399_2254371_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248938.1|2254445_2255051_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247855.1|2255055_2255232_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812172.1|2256756_2257053_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930747.1|2257227_2258580_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.4	8.5e-45
WP_010930153.1|2258722_2259739_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2261718_2262732_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2262818_2263724_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2263880_2264225_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2264382_2264841_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2264854_2267071_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2267067_2268129_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2268157_2269132_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2269083_2269902_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2269914_2270523_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2270697_2271093_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2271111_2272551_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2272579_2272927_+	GFA family protein	NA	NA	NA	NA	NA
WP_005012067.1|2272945_2273896_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2273994_2274945_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP019957	Bordetella pertussis strain Pelita III chromosome, complete genome	4105522	2303113	2353867	4105522	tRNA,protease,transposase	Staphylococcus_phage(11.11%)	48	NA	NA
WP_005012067.1|2303113_2304064_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302783.1|2304050_2304194_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930774.1|2304230_2305205_+	membrane protein	NA	NA	NA	NA	NA
WP_003810379.1|2305201_2305345_+	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_003810383.1|2306966_2307629_+	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003818560.1|2307631_2307808_+	cytochrome oxidase	NA	NA	NA	NA	NA
WP_010930775.1|2307804_2308743_+	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_010930776.1|2308834_2310325_+	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930777.1|2310410_2310563_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930778.1|2310576_2310816_+	membrane protein	NA	NA	NA	NA	NA
WP_010930779.1|2310911_2311655_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_019248115.1|2311663_2312188_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930781.1|2312286_2313210_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_003810400.1|2313206_2313968_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930782.1|2313983_2315069_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_076879573.1|2315081_2315282_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2315268_2316219_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2316178_2316592_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2316876_2317176_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816717.1|2317585_2319754_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.1e-36
WP_124740709.1|2320333_2320528_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2320553_2322584_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2322603_2322816_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2323093_2323633_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010930785.1|2323746_2325054_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2325118_2326276_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2326459_2327359_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2327377_2328682_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2328647_2329754_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2329841_2330078_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2330216_2331287_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2331290_2332646_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2332672_2333833_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2333835_2334474_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930792.1|2334475_2335780_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2335820_2337116_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2337122_2337629_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2337625_2338774_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2338801_2339227_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2339549_2342432_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2342524_2343280_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2344045_2345395_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_005012067.1|2345493_2346444_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2349184_2350474_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810870.1|2350592_2351063_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2351073_2352282_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2352428_2352893_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_010930800.1|2352916_2353867_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP019957	Bordetella pertussis strain Pelita III chromosome, complete genome	4105522	2735050	2775719	4105522	tRNA,transposase	Salmonella_phage(33.33%)	45	NA	NA
WP_010929591.1|2735050_2736001_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2736111_2736294_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2736393_2736990_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2737173_2738265_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2738764_2739175_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|2739233_2739575_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|2739580_2741998_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2742010_2743033_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2743107_2743467_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2743482_2743680_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2744015_2744966_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023996094.1|2744952_2745114_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816756.1|2745160_2745610_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_010929584.1|2745606_2746557_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302788.1|2746543_2746684_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|2746667_2748116_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|2748230_2748512_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153302789.1|2748464_2748629_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|2748615_2749566_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2749810_2750524_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2750646_2750874_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2751168_2751807_-	DedA family protein	NA	NA	NA	NA	NA
WP_023994671.1|2751879_2752950_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2752946_2753897_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2754312_2754837_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2754840_2755110_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2755308_2756370_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2756453_2758088_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2758089_2758893_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2758921_2759881_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2759884_2761399_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2761435_2762440_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2762871_2763342_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2763377_2763989_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2764019_2764643_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2764723_2766256_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|2766290_2767532_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2767575_2768607_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2768603_2769773_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2769766_2770447_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2770608_2771451_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2771613_2772585_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2772756_2773635_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2773657_2774728_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2774768_2775719_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP019957	Bordetella pertussis strain Pelita III chromosome, complete genome	4105522	2800817	2861966	4105522	tRNA,transposase	Bacillus_virus(20.0%)	48	NA	NA
WP_005013747.1|2800817_2801768_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931042.1|2802183_2804820_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_014486086.1|2804816_2805941_-	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_019247521.1|2805937_2807320_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810957.1|2807455_2807923_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931044.1|2808044_2808713_+	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_019249399.1|2808842_2809988_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931046.1|2809989_2811720_-	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004568502.1|2811837_2812146_-	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931047.1|2812158_2812971_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_023995127.1|2813851_2816017_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_019248319.1|2816121_2816931_+	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	1.6e-22
WP_010931050.1|2816970_2818575_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931051.1|2818655_2819396_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247407.1|2819403_2819898_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931052.1|2820270_2821290_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931053.1|2821286_2822669_-	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931054.1|2822701_2823562_-	amidohydrolase	NA	NA	NA	NA	NA
WP_029443733.1|2824565_2825447_+	NRDE family protein	NA	NA	NA	NA	NA
WP_003810921.1|2825505_2825943_+	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_003816577.1|2826033_2827005_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931057.1|2827043_2827988_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_010931058.1|2828083_2828893_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931059.1|2828969_2829344_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931060.1|2829450_2830143_-	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_003810909.1|2830135_2830552_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2830662_2831295_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2831323_2831767_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2831788_2832880_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2832934_2833735_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2833870_2834491_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2834630_2835104_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2836243_2837194_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2837190_2844852_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2845092_2849139_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2849451_2850033_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2850029_2851328_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2851407_2852436_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_076879546.1|2852359_2852710_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2852696_2853647_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2853745_2854696_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2854692_2855643_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2855959_2856565_+	fimbrial protein FimX	NA	NA	NA	NA	NA
WP_010931072.1|2856618_2857932_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2858006_2858477_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2858476_2859265_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2859275_2860928_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2861015_2861966_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP019957	Bordetella pertussis strain Pelita III chromosome, complete genome	4105522	2885891	2942905	4105522	protease,transposase	Pelagibacter_phage(20.0%)	44	NA	NA
WP_005012067.1|2885891_2886842_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2886976_2888083_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2888093_2889191_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2889335_2890541_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2890547_2891069_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2891065_2891557_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2891553_2891805_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2891785_2892271_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2892406_2895868_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_076879578.1|2895864_2896770_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2896779_2897211_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2897462_2897966_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_023995849.1|2897977_2899444_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2899518_2900394_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2900390_2901398_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2901865_2902171_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2902261_2902852_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2903042_2904059_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2904250_2906587_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2906669_2907104_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010929956.1|2907202_2908153_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2908149_2908944_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2908975_2909680_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2909754_2910555_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2910551_2910959_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2910955_2911597_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_019247695.1|2911589_2913611_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2914850_2916182_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2916178_2917129_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2918835_2919102_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2919809_2920148_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2924701_2925304_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2925400_2926690_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2926747_2927479_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2927475_2928279_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2928275_2929364_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2929360_2930290_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2930438_2931584_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2931605_2932556_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2932886_2936708_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2936864_2937533_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931112.1|2937537_2939211_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2939229_2940549_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_023995053.1|2940553_2942905_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
>prophage 22
NZ_CP019957	Bordetella pertussis strain Pelita III chromosome, complete genome	4105522	2956913	3016247	4105522	transposase	Vibrio_phage(20.0%)	56	NA	NA
WP_010931121.1|2956913_2957864_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2958144_2958765_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2958761_2959175_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2959171_2960215_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2960270_2960459_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2960468_2961233_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2961323_2961980_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2962071_2962830_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2962855_2964457_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2964657_2965662_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2965762_2966026_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2966143_2966920_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2967510_2968461_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2970844_2971957_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2972013_2972964_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994668.1|2972950_2973097_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003813070.1|2973172_2973394_-	YgdI/YgdR family lipoprotein	NA	NA	NA	NA	NA
WP_010931131.1|2973607_2975014_-	threonine synthase	NA	NA	NA	NA	NA
WP_003813074.1|2975010_2976315_-	homoserine dehydrogenase	NA	NA	NA	NA	NA
WP_003813076.1|2976311_2977619_-	alanine transaminase	NA	NA	NA	NA	NA
WP_003813077.1|2977715_2978168_+	Xcc1710-like domain-containing protein	NA	NA	NA	NA	NA
WP_003813079.1|2978170_2978635_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_003813082.1|2978714_2980394_+	PhoH family protein	NA	A0A2I7SAD7	Vibrio_phage	36.9	1.5e-70
WP_003813085.1|2980498_2981476_+	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
WP_010931134.1|2981555_2982524_+	bile acid:sodium symporter	NA	NA	NA	NA	NA
WP_003813089.1|2982544_2983918_-	replicative DNA helicase	NA	C7BGG1	Burkholderia_phage	58.2	4.0e-135
WP_003813091.1|2983914_2984751_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931135.1|2984867_2985323_-	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_003813094.1|2985338_2985611_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_003813095.1|2985703_2986027_-	primosomal replication protein N	NA	NA	NA	NA	NA
WP_010926331.1|2986074_2986455_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_003813103.1|2986674_2987472_-	GTP cyclohydrolase I FolE2	NA	NA	NA	NA	NA
WP_010931136.1|2987628_2989491_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_003820295.1|2989540_2990452_-	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
WP_003813109.1|2990456_2990723_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_033446289.1|2990809_2991640_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931138.1|2991814_2992780_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813114.1|2992950_2993961_+	acyltransferase family protein	NA	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	24.6	3.6e-16
WP_076879579.1|2993967_2995260_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
WP_023996438.1|2996193_2996352_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814555.1|2996402_2997875_-	magnesium transporter	NA	NA	NA	NA	NA
WP_003814554.1|2997885_2998296_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_010929220.1|2998359_2999406_-	YeiH family putative sulfate export transporter	NA	NA	NA	NA	NA
WP_003814552.1|2999512_3000391_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931140.1|3000404_3001601_-	amidohydrolase	NA	NA	NA	NA	NA
WP_010931141.1|3001662_3003354_+	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	28.1	9.4e-33
WP_005012067.1|3003350_3004301_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879632.1|3004287_3004533_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|3004421_3005318_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|3007595_3009821_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|3009985_3011074_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|3011030_3011684_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|3011731_3012529_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|3013060_3014011_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166214.1|3014091_3015240_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010929591.1|3015296_3016247_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP019957	Bordetella pertussis strain Pelita III chromosome, complete genome	4105522	3026022	3077578	4105522	transposase	Ostreococcus_lucimarinus_virus(16.67%)	48	NA	NA
WP_023852748.1|3026022_3027261_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|3027302_3028565_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|3028571_3029324_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|3029375_3029561_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|3029836_3030301_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|3030332_3030992_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|3031136_3033245_+	AsmA family protein	NA	NA	NA	NA	NA
WP_010931155.1|3033246_3033867_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|3033970_3034711_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|3035845_3036970_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|3037015_3037384_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3037625_3038576_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|3039611_3040154_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740747.1|3040346_3040553_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930176.1|3040539_3041490_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|3041486_3042452_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|3042521_3043358_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_076879583.1|3043834_3044980_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3045041_3045992_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931159.1|3046184_3046967_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931160.1|3046980_3047730_-	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931161.1|3047757_3049104_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931162.1|3049129_3050059_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003819549.1|3050174_3051080_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931163.1|3051097_3052297_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010931164.1|3052369_3053062_-	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931165.1|3053110_3055537_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_005013747.1|3055581_3056532_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809026.1|3056748_3057117_-	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_003809025.1|3057402_3058329_+	VOC family protein	NA	NA	NA	NA	NA
WP_010931167.1|3058372_3059383_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010931168.1|3059379_3059814_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931169.1|3060939_3061728_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931170.1|3061737_3062520_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931171.1|3062523_3063615_-	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931172.1|3063720_3065196_+	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931173.1|3065337_3065886_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809010.1|3065901_3066363_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931174.1|3066463_3067453_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931175.1|3067751_3068453_+	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931176.1|3068491_3069865_-	amidase	NA	NA	NA	NA	NA
WP_023997744.1|3069903_3071190_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931177.1|3072076_3072979_+	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_010931178.1|3072926_3074147_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931179.1|3074143_3074653_-	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010926062.1|3074642_3075338_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931181.1|3075408_3076278_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929591.1|3076627_3077578_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP019957	Bordetella pertussis strain Pelita III chromosome, complete genome	4105522	3150900	3214734	4105522	protease,tRNA,transposase	Pseudomonas_phage(30.0%)	58	NA	NA
WP_005015810.1|3150900_3151851_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122802.1|3151996_3153121_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.3	3.8e-38
WP_023853315.1|3153326_3153890_+	isochorismatase family protein	NA	NA	NA	NA	NA
WP_003814871.1|3154884_3155367_-	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_003814873.1|3155524_3156772_-	serine hydroxymethyltransferase	NA	A0A219YCZ0	Aeromonas_phage	52.7	1.1e-99
WP_003820605.1|3156991_3157648_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_003814877.1|3157683_3158913_-|tRNA	tyrosine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_023995983.1|3159035_3159194_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3159180_3160131_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931221.1|3160222_3161638_+	M23 family metallopeptidase	NA	A8ATH6	Listeria_phage	46.9	1.9e-18
WP_010931222.1|3161643_3162780_+	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA	NA
WP_003814883.1|3162849_3163221_-	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	56.9	4.7e-30
WP_010931223.1|3163308_3164055_-	membrane protein	NA	NA	NA	NA	NA
WP_003820599.1|3164091_3165156_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
WP_010931224.1|3165344_3165737_-	30S ribosomal protein S9	NA	NA	NA	NA	NA
WP_010927106.1|3165746_3166175_-	50S ribosomal protein L13	NA	NA	NA	NA	NA
WP_004567739.1|3166470_3167568_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004567741.1|3167909_3169274_-|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
WP_023853313.1|3169332_3169884_+	ribosome-associated protein	NA	NA	NA	NA	NA
WP_010931226.1|3169897_3170572_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931227.1|3171828_3172638_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.9	2.6e-33
WP_010931228.1|3172640_3173477_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003820594.1|3173491_3174184_+	cysteine hydrolase	NA	NA	NA	NA	NA
WP_003820593.1|3174195_3174585_-	VOC family protein	NA	NA	NA	NA	NA
WP_003820592.1|3174690_3176079_-	ATP-dependent RNA helicase DbpA	NA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	33.5	4.6e-54
WP_010931229.1|3176195_3177692_-	membrane protein	NA	NA	NA	NA	NA
WP_010931230.1|3177988_3178663_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_076879636.1|3178556_3178775_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3178761_3179712_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931231.1|3179708_3182168_-	bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003814917.1|3182264_3183710_+|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010931233.1|3183713_3184901_-	MFS transporter	NA	NA	NA	NA	NA
WP_023998238.1|3184969_3185479_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814925.1|3185680_3186133_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247415.1|3186694_3189757_+	indolepyruvate ferredoxin oxidoreductase family protein	NA	NA	NA	NA	NA
WP_010931235.1|3190062_3192990_+	ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4P767	Pseudomonas_phage	43.9	3.4e-171
WP_003814929.1|3193011_3194208_+	ribonucleotide-diphosphate reductase subunit beta	NA	A0A2H4P762	Pseudomonas_phage	28.9	1.0e-33
WP_010931236.1|3194525_3195053_+	histone	NA	NA	NA	NA	NA
WP_010931237.1|3195191_3195767_+	YggT family protein	NA	NA	NA	NA	NA
WP_010931238.1|3195774_3197238_-	D-alanine--poly(phosphoribitol) ligase	NA	A0A2K9L3I8	Tupanvirus	25.1	7.3e-26
WP_010931239.1|3197248_3198376_-	membrane-bound O-acyltransferase	NA	A0A125RNP0	Pseudomonas_phage	30.8	3.7e-25
WP_003814939.1|3198383_3198509_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814941.1|3198505_3199633_-	D-alanyl-lipoteichoic acid biosynthesis protein DltD	NA	NA	NA	NA	NA
WP_003814943.1|3199658_3199898_-	acyl carrier protein	NA	NA	NA	NA	NA
WP_010931240.1|3200178_3200682_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010931241.1|3200854_3201796_-	carbohydrate kinase family protein	NA	NA	NA	NA	NA
WP_010931242.1|3201807_3202905_-	DUF3426 domain-containing protein	NA	NA	NA	NA	NA
WP_003814951.1|3203870_3205217_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_003814952.1|3205226_3205676_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003814953.1|3205765_3206200_-	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA	NA
WP_023853327.1|3206278_3206827_-	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_003814955.1|3206909_3208280_+	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA	NA
WP_010931244.1|3208290_3208884_+	esterase	NA	NA	NA	NA	NA
WP_010931245.1|3208955_3210839_+	RNB domain-containing ribonuclease	NA	NA	NA	NA	NA
WP_010931246.1|3210876_3211776_+	TonB family protein	NA	NA	NA	NA	NA
WP_010931247.1|3211772_3212636_+	shikimate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|3212734_3213685_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|3213783_3214734_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP019957	Bordetella pertussis strain Pelita III chromosome, complete genome	4105522	3394742	3515018	4105522	tRNA,transposase	Acinetobacter_phage(20.0%)	103	NA	NA
WP_010929956.1|3394742_3395693_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3396097_3396742_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3396766_3397351_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3397451_3398069_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3398071_3399787_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3399783_3400092_-	urease subunit beta	NA	NA	NA	NA	NA
WP_015040527.1|3400108_3400744_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3400770_3401073_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3401173_3402028_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3402215_3402440_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3402609_3402882_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3403299_3403707_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3404076_3404871_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3404971_3406207_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3406275_3407292_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_029443830.1|3407288_3408680_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3408676_3409873_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3409869_3411408_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3411404_3412664_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3414604_3415555_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077069004.1|3415653_3416604_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302791.1|3416590_3416767_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931344.1|3417370_3418465_-	CoA transferase	NA	NA	NA	NA	NA
WP_010931345.1|3418457_3419792_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3419745_3420429_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3420454_3421618_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3421614_3422616_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3422615_3423488_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3423484_3424234_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3424230_3425022_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3425018_3426158_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_033446332.1|3426466_3427219_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3427252_3428035_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3428038_3428428_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3429567_3430431_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3430466_3431555_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_005013747.1|3431551_3432502_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_080501793.1|3432488_3432902_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247959.1|3432855_3435834_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3436760_3437639_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3439587_3440538_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3440534_3441002_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3441044_3441815_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3441835_3442636_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3442646_3444056_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3444150_3444936_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930525.1|3445175_3446192_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3446299_3446692_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3446829_3447510_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_010931358.1|3447514_3448513_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931359.1|3448581_3449532_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814239.1|3451036_3451738_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010927010.1|3451737_3453162_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_010931360.1|3453178_3454234_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_010931361.1|3454230_3455571_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003820957.1|3455686_3457450_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3457561_3458440_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3458552_3459368_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3459371_3459623_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010931363.1|3459707_3460724_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3461054_3461276_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3463636_3464554_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3465051_3466260_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3466339_3467911_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3468028_3468964_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3469152_3470097_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814281.1|3470165_3470381_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814283.1|3470664_3476382_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3476387_3477515_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3477570_3478197_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929632.1|3478468_3479485_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3479615_3480326_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3480322_3481312_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023852728.1|3481443_3483039_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3483041_3483779_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3483934_3484807_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3485075_3486296_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3486292_3486952_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3487023_3487656_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3487685_3488204_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3488214_3489324_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3489370_3490225_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3490226_3491129_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3492351_3493302_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905441.1|3495055_3496045_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3496220_3497009_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3497005_3498037_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3498055_3498619_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3498674_3500195_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3500458_3501163_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3501170_3501908_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3502013_3502388_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3502430_3503720_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3503716_3504886_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3504882_3505722_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3505781_3506717_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3506729_3507680_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3507778_3508741_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3508772_3509132_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3509256_3510159_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3510160_3511933_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3511967_3512744_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005012808.1|3514067_3515018_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP019957	Bordetella pertussis strain Pelita III chromosome, complete genome	4105522	3529956	3588692	4105522	tRNA,transposase	Planktothrix_phage(50.0%)	50	NA	NA
WP_005012808.1|3529956_3530907_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3531035_3532169_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3532212_3533118_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3533120_3534821_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3534817_3535738_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3535745_3536723_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3536781_3537816_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3539790_3540027_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3540153_3541017_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3541105_3541927_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3542006_3542744_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3542740_3543733_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3543846_3544509_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3544553_3545702_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3548025_3548976_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931401.1|3549316_3550267_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3550365_3551316_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3551612_3552110_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_078387262.1|3552152_3553928_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_076879643.1|3553974_3554802_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3554808_3555543_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3556712_3557507_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3557796_3558387_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3558420_3559749_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3559823_3560969_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3561080_3562031_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3562762_3563140_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3563124_3563826_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3563969_3564662_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3564661_3565765_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3565874_3568247_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3568243_3569803_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3569827_3570625_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3570656_3571802_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3571906_3573349_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_003814416.1|3573351_3574440_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3576718_3577669_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879618.1|3577655_3577874_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|3578798_3579356_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3579331_3579682_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3579850_3580645_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3580641_3581691_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3581690_3582380_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3582466_3582964_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3582995_3584312_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3584328_3585303_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3585339_3585798_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3585797_3586478_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3586480_3586909_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3586961_3588692_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
>prophage 28
NZ_CP019957	Bordetella pertussis strain Pelita III chromosome, complete genome	4105522	3594858	3635611	4105522	terminase,tail,protease,transposase	uncultured_Caudovirales_phage(20.0%)	47	NA	NA
WP_010931429.1|3594858_3598815_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3598807_3599197_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3599193_3599727_-	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3599794_3600154_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3600163_3602776_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3602801_3603092_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3603109_3603439_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3603448_3603967_-	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3604221_3604722_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3604729_3605152_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3605148_3605547_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3605543_3605939_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931440.1|3605938_3606139_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3606140_3606623_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3606685_3606937_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853024.1|3606946_3607594_-	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
WP_005013747.1|3607611_3608562_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3610039_3610642_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3610764_3611007_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3611012_3612068_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3612096_3613515_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3613517_3614795_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931448.1|3614781_3615231_-|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
WP_005012067.1|3615906_3616857_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999802.1|3616874_3617096_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931449.1|3617110_3617809_+	membrane protein	NA	NA	NA	NA	NA
WP_010931450.1|3617801_3618122_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|3618601_3619213_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_010931452.1|3619278_3619491_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3619742_3620693_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302792.1|3620679_3620844_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931453.1|3620791_3621592_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|3621653_3622037_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|3622048_3623482_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|3623688_3624018_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_003814191.1|3624020_3624689_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|3624952_3625873_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|3625919_3626132_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|3626154_3626577_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931458.1|3626593_3627694_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|3627790_3629308_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|3629383_3630223_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|3630244_3631126_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|3631207_3632302_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|3632595_3633546_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|3633620_3634562_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3634660_3635611_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP019957	Bordetella pertussis strain Pelita III chromosome, complete genome	4105522	4004590	4069502	4105522	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4004590_4005076_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4005164_4005302_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4005294_4006275_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931648.1|4006541_4007351_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_010931649.1|4007390_4008071_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4008064_4008523_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4008534_4008897_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4008979_4009663_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4009718_4010027_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4010045_4010360_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4010356_4012831_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4012838_4014230_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4014226_4014412_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4014390_4015092_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4015088_4015910_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4015890_4017015_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4017007_4018027_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_024000452.1|4018232_4019267_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4019367_4020159_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4020241_4020616_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4020593_4022003_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4021995_4023378_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4023712_4025317_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_077274089.1|4025352_4026366_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4026376_4027303_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4027693_4028644_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4028813_4030040_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4030239_4031106_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4031098_4032061_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4032161_4033112_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4033210_4034161_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4034259_4035210_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4035206_4036700_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4036696_4039804_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4039800_4042869_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4042865_4044116_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4044296_4045058_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4045090_4045741_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4045743_4046583_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4046823_4047567_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4047649_4047997_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4048094_4048937_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4048981_4049869_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4049895_4050084_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4050181_4051639_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4051625_4053152_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4053170_4053638_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4053637_4054660_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4054780_4055521_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4055575_4056676_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4056677_4057868_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4057987_4059004_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4059322_4059994_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4059990_4060899_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4061110_4061758_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4065609_4066686_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4066696_4067506_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4067595_4068369_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_153302798.1|4068388_4068565_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929577.1|4068551_4069502_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
