assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002012365.1_ASM201236v1	NZ_CP019935	Streptococcus thermophilus strain APC151 chromosome, complete genome	1	85936-86037	1	CRISPRCasFinder	no	cas1,cas2,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6	cas1,cas2,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,csn2,cas9,DEDDh,cas3,DinG	Type III-C,Type III-B,Type III-A,Type III-D	GATATAAACCTAATTACCTCGAGAGGGGAC	30	0	0	NA	NA	NA	1	1	TypeIII-C,TypeIII-B,TypeIII-A,TypeIII-D	cas1,cas2,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,csn2,cas9,DEDDh,cas3,DinG	NA|73aa|up_8|NZ_CP019935.1_80449_80668_+,NA|72aa|up_4|NZ_CP019935.1_82409_82625_-,NA	NA|64aa|up_9|NZ_CP019935.1_79821_80013_+	COG4405, COG4405, Uncharacterized protein conserved in bacteria [Function unknown]	NA|73aa|up_8|NZ_CP019935.1_80449_80668_+	NA	NA|223aa|up_7|NZ_CP019935.1_80869_81538_+	pfam05857, TraX, TraX protein	NA|75aa|up_6|NZ_CP019935.1_81538_81763_+	pfam05857, TraX, TraX protein	NA|183aa|up_5|NZ_CP019935.1_81804_82353_+	cd03135, GATase1_DJ-1, Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1	NA|72aa|up_4|NZ_CP019935.1_82409_82625_-	NA	NA|268aa|up_3|NZ_CP019935.1_82593_83397_+	PRK00054, PRK00054, dihydroorotate dehydrogenase electron transfer subunit; Reviewed	NA|316aa|up_2|NZ_CP019935.1_83415_84363_+	PRK07259, PRK07259, dihydroorotate dehydrogenase	cas1|267aa|up_1|NZ_CP019935.1_84501_85302_+	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cas2|110aa|up_0|NZ_CP019935.1_85505_85835_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas6|244aa|down_0|NZ_CP019935.1_86173_86905_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas10|759aa|down_1|NZ_CP019935.1_86885_89162_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm2gr11|127aa|down_2|NZ_CP019935.1_89165_89546_+	pfam03750, Csm2_III-A, Csm2 Type III-A	csm3gr7|221aa|down_3|NZ_CP019935.1_89545_90208_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|300aa|down_4|NZ_CP019935.1_90209_91109_+	pfam17953, Csm4_C, CRISPR Csm4 C-terminal domain	csm5gr7|358aa|down_5|NZ_CP019935.1_91111_92185_+	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm6|392aa|down_6|NZ_CP019935.1_92338_93514_+	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	NA|232aa|down_7|NZ_CP019935.1_93713_94409_+	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase	NA|210aa|down_8|NZ_CP019935.1_94497_95127_+	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated	NA|484aa|down_9|NZ_CP019935.1_95823_97275_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]
GCF_002012365.1_ASM201236v1	NZ_CP019935	Streptococcus thermophilus strain APC151 chromosome, complete genome	2	575011-576303	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	csn2,cas2,cas1,cas9	cas1,cas2,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,csn2,cas9,DEDDh,cas3,DinG	Type II-A,Type II-C,Type II-B	GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC,GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC,GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC	36,36,36	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	19,19,19	19	TypeII-A,TypeII-C,TypeII-B	cas1,cas2,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,csn2,cas9,DEDDh,cas3,DinG	NA|66aa|up_7|NZ_CP019935.1_568721_568919_-,NA|148aa|up_4|NZ_CP019935.1_571803_572247_-,NA|80aa|up_0|NZ_CP019935.1_574687_574927_-,NA	NA|737aa|up_9|NZ_CP019935.1_565698_567909_+	cd13619, PBP2_GlnP, Glutamine-binding domain of ABC transporter, a member of the type 2 periplasmic binding fold protein superfamily	NA|247aa|up_8|NZ_CP019935.1_567908_568649_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|66aa|up_7|NZ_CP019935.1_568721_568919_-	NA	NA|438aa|up_6|NZ_CP019935.1_569085_570399_-	PRK12297, obgE, GTPase CgtA; Reviewed	NA|43aa|up_5|NZ_CP019935.1_570492_570621_-	pfam13253, DUF4044, Protein of unknown function (DUF4044)	NA|148aa|up_4|NZ_CP019935.1_571803_572247_-	NA	NA|128aa|up_3|NZ_CP019935.1_572277_572661_-	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|81aa|up_2|NZ_CP019935.1_573349_573592_+	COG2182, MalE, Maltose-binding periplasmic proteins/domains [Carbohydrate transport and metabolism]	NA|297aa|up_1|NZ_CP019935.1_573759_574650_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|80aa|up_0|NZ_CP019935.1_574687_574927_-	NA	csn2|220aa|down_0|NZ_CP019935.1_576624_577284_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|115aa|down_1|NZ_CP019935.1_577273_577618_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|290aa|down_2|NZ_CP019935.1_577614_578484_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1389aa|down_3|NZ_CP019935.1_578483_582650_-	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1	NA|216aa|down_4|NZ_CP019935.1_582982_583630_-	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p	NA|575aa|down_5|NZ_CP019935.1_583741_585466_-	PRK04778, PRK04778, septation ring formation regulator EzrA; Provisional	NA|651aa|down_6|NZ_CP019935.1_585562_587515_-	PRK05644, gyrB, DNA gyrase subunit B; Validated	NA|202aa|down_7|NZ_CP019935.1_587515_588121_-	cd07523, HAD_YsbA-like, uncharacterized family of the haloacid dehalogenase-like superfamily, similar to the uncharacterized Lactococcus lactis YsbA	NA|232aa|down_8|NZ_CP019935.1_588161_588857_-	pfam04172, LrgB, LrgB-like family	NA|125aa|down_9|NZ_CP019935.1_588849_589224_-	pfam03788, LrgA, LrgA family
GCF_002012365.1_ASM201236v1	NZ_CP019935	Streptococcus thermophilus strain APC151 chromosome, complete genome	3	791511-791602	3	CRISPRCasFinder	no	cas3	cas1,cas2,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,csn2,cas9,DEDDh,cas3,DinG	Unclear	CTTTTCTTTACGATATCAATTTTAACATCTTT	32	0	0	NA	NA	NA	1	1	Unclear	cas1,cas2,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,csn2,cas9,DEDDh,cas3,DinG	NA|86aa|up_3|NZ_CP019935.1_787130_787388_-,NA|143aa|down_7|NZ_CP019935.1_797504_797933_-	cas3|673aa|up_9|NZ_CP019935.1_778580_780599_-	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|368aa|up_8|NZ_CP019935.1_780727_781831_-	PRK00053, alr, alanine racemase; Reviewed	NA|120aa|up_7|NZ_CP019935.1_781851_782211_-	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional	NA|344aa|up_6|NZ_CP019935.1_782214_783246_-	PRK09261, PRK09261, phospho-2-dehydro-3-deoxyheptonate aldolase; Validated	NA|344aa|up_5|NZ_CP019935.1_783343_784375_-	COG0722, AroG, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]	NA|850aa|up_4|NZ_CP019935.1_784398_786948_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|86aa|up_3|NZ_CP019935.1_787130_787388_-	NA	NA|316aa|up_2|NZ_CP019935.1_787474_788422_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|298aa|up_1|NZ_CP019935.1_788487_789381_-	pfam00480, ROK, ROK family	NA|634aa|up_0|NZ_CP019935.1_789564_791466_-	TIGR01996, Includes:_Phosphotransferase_enzyme_IIB_component, PTS system, sucrose-specific IIBC component	NA|481aa|down_0|NZ_CP019935.1_791714_793157_+	TIGR01322, Sucrose-6-phosphate_hydrolase, sucrose-6-phosphate hydrolase	NA|322aa|down_1|NZ_CP019935.1_793165_794131_+	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs	NA|145aa|down_2|NZ_CP019935.1_794220_794655_-	PRK00202, nusB, transcription antitermination factor NusB	NA|130aa|down_3|NZ_CP019935.1_794647_795037_-	pfam03780, Asp23, Asp23 family, cell envelope-related function	NA|187aa|down_4|NZ_CP019935.1_795107_795668_-	PRK00529, PRK00529, elongation factor P; Validated	NA|152aa|down_5|NZ_CP019935.1_795780_796236_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|354aa|down_6|NZ_CP019935.1_796254_797316_-	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|143aa|down_7|NZ_CP019935.1_797504_797933_-	NA	NA|198aa|down_8|NZ_CP019935.1_797977_798571_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|130aa|down_9|NZ_CP019935.1_798539_798929_-	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter
GCF_002012365.1_ASM201236v1	NZ_CP019935	Streptococcus thermophilus strain APC151 chromosome, complete genome	4	1689194-1691603	2,4,2,3	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas9,cas1,cas2,csn2	cas1,cas2,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,csn2,cas9,DEDDh,cas3,DinG	Type II-A,Type II-C,Type II-B	GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC,GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC,GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC,GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	36,36,36,36	0	0	NA	NA	NA:NA:NA:NA	36,36,36,36	36	TypeII-A,TypeII-C,TypeII-B	cas1,cas2,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,csn2,cas9,DEDDh,cas3,DinG	NA|86aa|up_5|NZ_CP019935.1_1682007_1682265_-,NA	NA|183aa|up_9|NZ_CP019935.1_1677829_1678378_-	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|454aa|up_8|NZ_CP019935.1_1678593_1679955_+	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|74aa|up_7|NZ_CP019935.1_1681161_1681383_+	COG3655, COG3655, Predicted transcriptional regulator [Transcription]	NA|153aa|up_6|NZ_CP019935.1_1681382_1681841_+	COG3392, COG3392, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|86aa|up_5|NZ_CP019935.1_1682007_1682265_-	NA	NA|205aa|up_4|NZ_CP019935.1_1682434_1683049_+	pfam09911, DUF2140, Uncharacterized protein conserved in bacteria (DUF2140)	cas9|1122aa|up_3|NZ_CP019935.1_1683302_1686668_+	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9	cas1|304aa|up_2|NZ_CP019935.1_1686845_1687757_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|108aa|up_1|NZ_CP019935.1_1687758_1688082_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|351aa|up_0|NZ_CP019935.1_1688078_1689131_+	pfam16813, Cas_St_Csn2, CRISPR-associated protein Csn2 subfamily St	NA|272aa|down_0|NZ_CP019935.1_1691644_1692460_-	COG3689, COG3689, Predicted membrane protein [Function unknown]	NA|301aa|down_1|NZ_CP019935.1_1692459_1693362_-	COG0701, COG0701, Predicted permeases [General function prediction only]	NA|711aa|down_2|NZ_CP019935.1_1693725_1695858_+	COG2183, Tex, Transcriptional accessory protein [Transcription]	NA|147aa|down_3|NZ_CP019935.1_1695844_1696285_+	PRK04351, PRK04351, SprT family protein	NA|88aa|down_4|NZ_CP019935.1_1696350_1696614_+	COG1983, PspC, Putative stress-responsive transcriptional regulator [Transcription / Signal transduction mechanisms]	NA|310aa|down_5|NZ_CP019935.1_1696744_1697674_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|264aa|down_6|NZ_CP019935.1_1697673_1698465_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|133aa|down_7|NZ_CP019935.1_1698587_1698986_+	COG4768, COG4768, Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]	NA|147aa|down_8|NZ_CP019935.1_1698998_1699439_+	pfam12732, YtxH, YtxH-like protein	NA|99aa|down_9|NZ_CP019935.1_1699459_1699756_-	pfam11674, DUF3270, Protein of unknown function (DUF3270)
