assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002012045.1_ASM201204v1	NZ_CP018976	Escherichia coli strain Ecol_545 chromosome, complete genome	1	1406992-1407076	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,cas14j,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	TGGACAACTGTTGGACAACCGTTGGACAAT	30	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,cas14j,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT	NA|95aa|up_1|NZ_CP018976.1_1404380_1404665_-,NA|135aa|down_3|NZ_CP018976.1_1409000_1409405_+,NA|63aa|down_7|NZ_CP018976.1_1412870_1413059_+,NA|92aa|down_8|NZ_CP018976.1_1413193_1413469_+	NA|173aa|up_9|NZ_CP018976.1_1401094_1401613_-	pfam06530, Phage_antitermQ, Phage antitermination protein Q	NA|224aa|up_8|NZ_CP018976.1_1401603_1402275_-	cd07424, MPP_PrpA_PrpB, PrpA and PrpB, metallophosphatase domain	NA|69aa|up_7|NZ_CP018976.1_1402252_1402459_-	pfam06322, Phage_NinH, Phage NinH protein	NA|204aa|up_6|NZ_CP018976.1_1402455_1403067_-	pfam05766, NinG, Bacteriophage Lambda NinG protein	NA|59aa|up_5|NZ_CP018976.1_1403059_1403236_-	pfam05810, NinF, NinF protein	NA|120aa|up_4|NZ_CP018976.1_1403235_1403595_-	PHA01519, PHA01519, hypothetical protein	NA|59aa|up_3|NZ_CP018976.1_1403597_1403774_-	pfam05322, NinE, NINE Protein	NA|137aa|up_2|NZ_CP018976.1_1403770_1404181_-	pfam05772, NinB, NinB protein	NA|95aa|up_1|NZ_CP018976.1_1404380_1404665_-	NA	NA|479aa|up_0|NZ_CP018976.1_1405155_1406592_-	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily	NA|93aa|down_0|NZ_CP018976.1_1407654_1407933_-	pfam05269, Phage_CII, Bacteriophage CII protein	NA|72aa|down_1|NZ_CP018976.1_1408052_1408268_-	pfam01381, HTH_3, Helix-turn-helix	NA|211aa|down_2|NZ_CP018976.1_1408371_1409004_+	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]	NA|135aa|down_3|NZ_CP018976.1_1409000_1409405_+	NA	NA|249aa|down_4|NZ_CP018976.1_1410059_1410806_-	pfam01695, IstB_IS21, IstB-like ATP binding protein	NA|514aa|down_5|NZ_CP018976.1_1410820_1412362_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|110aa|down_6|NZ_CP018976.1_1412532_1412862_+	pfam11438, N36, 36-mer N-terminal peptide of the N protein (N36)	NA|63aa|down_7|NZ_CP018976.1_1412870_1413059_+	NA	NA|92aa|down_8|NZ_CP018976.1_1413193_1413469_+	NA	NA|236aa|down_9|NZ_CP018976.1_1413723_1414431_+	COG4712, COG4712, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002012045.1_ASM201204v1	NZ_CP018976	Escherichia coli strain Ecol_545 chromosome, complete genome	2	1896524-1896615	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,cas14j,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,cas14j,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT	NA|70aa|up_9|NZ_CP018976.1_1885774_1885984_-,NA	NA|70aa|up_9|NZ_CP018976.1_1885774_1885984_-	NA	NA|1321aa|up_8|NZ_CP018976.1_1886038_1890001_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP018976.1_1890040_1890679_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP018976.1_1890966_1892058_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP018976.1_1892057_1892750_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP018976.1_1892761_1893148_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP018976.1_1893155_1893956_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP018976.1_1893965_1894556_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP018976.1_1894566_1895061_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP018976.1_1895081_1896410_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP018976.1_1897038_1897635_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP018976.1_1897655_1897883_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP018976.1_1897920_1899162_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_CP018976.1_1899453_1900710_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP018976.1_1900969_1901890_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP018976.1_1901889_1902195_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP018976.1_1902346_1902946_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP018976.1_1902942_1905489_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP018976.1_1905488_1906661_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP018976.1_1906790_1907483_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_002012045.1_ASM201204v1	NZ_CP018976	Escherichia coli strain Ecol_545 chromosome, complete genome	3	4869982-4871047	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,DEDDh,DinG,cas14j,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	16,17,17	17	Orphan	cas3,DEDDh,DinG,cas14j,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT	NA,NA	NA|919aa|up_9|NZ_CP018976.1_4856574_4859331_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|NZ_CP018976.1_4859387_4860689_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|NZ_CP018976.1_4860736_4862971_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|NZ_CP018976.1_4863048_4863297_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|NZ_CP018976.1_4863296_4863632_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|NZ_CP018976.1_4863703_4864495_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|NZ_CP018976.1_4864722_4866360_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|NZ_CP018976.1_4866447_4867746_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_1|NZ_CP018976.1_4867805_4868678_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|224aa|up_0|NZ_CP018976.1_4868971_4869643_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP018976.1_4871684_4873163_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP018976.1_4873189_4874467_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP018976.1_4874785_4875571_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP018976.1_4875640_4877095_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|NZ_CP018976.1_4877188_4878526_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP018976.1_4878503_4879283_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP018976.1_4879279_4880140_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|450aa|down_7|NZ_CP018976.1_4880239_4881588_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|192aa|down_8|NZ_CP018976.1_4881722_4882298_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_9|NZ_CP018976.1_4882314_4882575_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]
GCF_002012045.1_ASM201204v1	NZ_CP018976	Escherichia coli strain Ecol_545 chromosome, complete genome	4	4899534-4900233	2,4,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,DEDDh,DinG,cas14j,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Type I-E	GTGTTCCCCGCGTCAGCGGGGATAAACCG,GTGTTCCCCGCGTCAGCGGGGATAAACCG,GTGTTCCCCGCGNCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	11,11,11	11	TypeI-E	cas3,DEDDh,DinG,cas14j,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT	NA,NA	NA|51aa|up_9|NZ_CP018976.1_4889179_4889332_+	pfam01848, HOK_GEF, Hok/gef family	NA|371aa|up_8|NZ_CP018976.1_4889524_4890637_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	cas3|900aa|up_7|NZ_CP018976.1_4890875_4893575_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_CP018976.1_4893672_4895235_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|NZ_CP018976.1_4895231_4895768_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_4|NZ_CP018976.1_4895782_4896838_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP018976.1_4896848_4897595_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP018976.1_4897576_4898227_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NZ_CP018976.1_4898223_4899147_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP018976.1_4899143_4899437_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP018976.1_4900314_4901352_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP018976.1_4901603_4902512_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP018976.1_4902513_4903941_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP018976.1_4903940_4904546_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP018976.1_4904595_4904919_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP018976.1_4905112_4905424_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP018976.1_4905442_4906153_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP018976.1_4906152_4906632_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP018976.1_4906628_4907678_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP018976.1_4907658_4908420_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
