assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002009315.1_ASM200931v1	NZ_CP019903	Escherichia coli strain MDR_56 chromosome, complete genome	1	175608-175759	1	CRISPRCasFinder	no		PD-DExK,csa3,cas3,WYL,DEDDh,DinG,c2c9_V-U4,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	GGTGAGATAGGTGGTGTATACAGAGATGCCCGTGCTCATACTGACAGTCAGGT	53	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csa3,cas3,WYL,DEDDh,DinG,c2c9_V-U4,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,cas14j	NA|66aa|up_2|NZ_CP019903.1_171127_171325_+,NA	NA|340aa|up_9|NZ_CP019903.1_164699_165719_-	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|148aa|up_8|NZ_CP019903.1_165976_166420_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|91aa|up_7|NZ_CP019903.1_166498_166771_+	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|463aa|up_6|NZ_CP019903.1_166793_168182_+	PRK12996, ulaA, PTS ascorbate transporter subunit IIC	NA|277aa|up_5|NZ_CP019903.1_168178_169009_+	COG3959, COG3959, Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]	NA|318aa|up_4|NZ_CP019903.1_169001_169955_+	COG3958, COG3958, Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]	NA|38aa|up_3|NZ_CP019903.1_170217_170331_+	pfam01527, HTH_Tnp_1, Transposase	NA|66aa|up_2|NZ_CP019903.1_171127_171325_+	NA	NA|514aa|up_1|NZ_CP019903.1_171439_172981_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|405aa|up_0|NZ_CP019903.1_173453_174667_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|371aa|down_0|NZ_CP019903.1_176557_177670_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|152aa|down_1|NZ_CP019903.1_177758_178214_+	pfam08281, Sigma70_r4_2, Sigma-70, region 4	NA|113aa|down_2|NZ_CP019903.1_178570_178909_-	PRK13791, PRK13791, c-type lysozyme inhibitor	NA|230aa|down_3|NZ_CP019903.1_179413_180103_-	PRK01130, PRK01130, putative N-acetylmannosamine-6-phosphate 2-epimerase	NA|519aa|down_4|NZ_CP019903.1_180102_181659_-	TIGR02002, PTS_system_glucose-specific_IIABC_component, PTS system, glucose-specific IIBC component	NA|275aa|down_5|NZ_CP019903.1_181824_182649_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|448aa|down_6|NZ_CP019903.1_182806_184150_-	COG4222, COG4222, Uncharacterized protein conserved in bacteria [Function unknown]	NA|439aa|down_7|NZ_CP019903.1_185644_186961_-	PRK10974, PRK10974, sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA|62aa|down_8|NZ_CP019903.1_187131_187317_+	COG2337, MazF, Growth inhibitor [Signal transduction mechanisms]	NA|36aa|down_9|NZ_CP019903.1_187325_187433_+	COG2337, MazF, Growth inhibitor [Signal transduction mechanisms]
GCF_002009315.1_ASM200931v1	NZ_CP019903	Escherichia coli strain MDR_56 chromosome, complete genome	2	2672375-2672516	2	CRISPRCasFinder	no		PD-DExK,csa3,cas3,WYL,DEDDh,DinG,c2c9_V-U4,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGAAATGCAG	47	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csa3,cas3,WYL,DEDDh,DinG,c2c9_V-U4,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,cas14j	NA|36aa|up_4|NZ_CP019903.1_2668597_2668705_-,NA	NA|354aa|up_9|NZ_CP019903.1_2661838_2662900_-	pfam00419, Fimbrial, Fimbrial protein	NA|244aa|up_8|NZ_CP019903.1_2662896_2663628_-	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]	NA|820aa|up_7|NZ_CP019903.1_2663642_2666102_-	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|189aa|up_6|NZ_CP019903.1_2666152_2666719_-	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|428aa|up_5|NZ_CP019903.1_2667108_2668392_-	PRK05614, gltA, citrate synthase	NA|36aa|up_4|NZ_CP019903.1_2668597_2668705_-	NA	NA|135aa|up_3|NZ_CP019903.1_2669085_2669490_+	PRK09487, sdhC, succinate dehydrogenase cytochrome b556 subunit	NA|116aa|up_2|NZ_CP019903.1_2669483_2669831_+	PRK09488, sdhD, succinate dehydrogenase membrane anchor subunit	NA|589aa|up_1|NZ_CP019903.1_2669830_2671597_+	PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|239aa|up_0|NZ_CP019903.1_2671612_2672329_+	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|934aa|down_0|NZ_CP019903.1_2672689_2675491_+	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|406aa|down_1|NZ_CP019903.1_2675505_2676723_+	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|389aa|down_2|NZ_CP019903.1_2676816_2677983_+	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|290aa|down_3|NZ_CP019903.1_2677982_2678852_+	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|372aa|down_4|NZ_CP019903.1_2679091_2680207_+	sd00006, TPR, Tetratricopeptide repeat	NA|523aa|down_5|NZ_CP019903.1_2681535_2683104_+	PRK15097, PRK15097, cytochrome bd-I ubiquinol oxidase subunit CydA	NA|380aa|down_6|NZ_CP019903.1_2683119_2684259_+	PRK15003, PRK15003, cytochrome d ubiquinol oxidase subunit II	NA|38aa|down_7|NZ_CP019903.1_2684273_2684387_+	COG4890, COG4890, Predicted outer membrane lipoprotein [Function unknown]	NA|98aa|down_8|NZ_CP019903.1_2684386_2684680_+	PRK10588, PRK10588, hypothetical protein; Provisional	NA|135aa|down_9|NZ_CP019903.1_2684829_2685234_+	PRK10800, PRK10800, acyl-CoA thioesterase YbgC; Provisional
GCF_002009315.1_ASM200931v1	NZ_CP019903	Escherichia coli strain MDR_56 chromosome, complete genome	3	4859278-4860099	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	PD-DExK,csa3,cas3,WYL,DEDDh,DinG,c2c9_V-U4,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	13,13,13	13	TypeI-E	PD-DExK,csa3,cas3,WYL,DEDDh,DinG,c2c9_V-U4,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,cas14j	NA,NA	NA|254aa|up_9|NZ_CP019903.1_4851090_4851852_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP019903.1_4851832_4852882_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP019903.1_4852878_4853358_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP019903.1_4853357_4854068_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP019903.1_4854086_4854398_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP019903.1_4854591_4854915_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP019903.1_4854964_4855570_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP019903.1_4855569_4856997_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP019903.1_4856998_4857907_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP019903.1_4858158_4859196_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP019903.1_4860195_4860489_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|NZ_CP019903.1_4860485_4861409_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP019903.1_4861405_4862056_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP019903.1_4862037_4862784_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP019903.1_4862794_4863850_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_CP019903.1_4863864_4864401_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|down_6|NZ_CP019903.1_4864397_4865960_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|886aa|down_7|NZ_CP019903.1_4866057_4868715_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|371aa|down_8|NZ_CP019903.1_4868996_4870109_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|51aa|down_9|NZ_CP019903.1_4870301_4870454_-	pfam01848, HOK_GEF, Hok/gef family
GCF_002009315.1_ASM200931v1	NZ_CP019903	Escherichia coli strain MDR_56 chromosome, complete genome	4	4887150-4887727	4,2,2,3	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no		PD-DExK,csa3,cas3,WYL,DEDDh,DinG,c2c9_V-U4,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	CGGTTTATCCCCGCTGACGTGGGGAACTC,CGGTTTATCCCCGCTGNCGNGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGACGTGGGGAACTC	29,29,29,29	0	0	NA	NA	I-E:I-E:I-E:I-E	9,9,8,8	9	Orphan	PD-DExK,csa3,cas3,WYL,DEDDh,DinG,c2c9_V-U4,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,cas14j	NA,NA	NA|424aa|up_9|NZ_CP019903.1_4875795_4877067_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP019903.1_4877057_4877318_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP019903.1_4877334_4877910_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NZ_CP019903.1_4878056_4878917_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP019903.1_4878913_4879693_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NZ_CP019903.1_4879670_4881080_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP019903.1_4881101_4882556_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP019903.1_4882625_4883411_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP019903.1_4883729_4885007_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP019903.1_4885033_4886512_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP019903.1_4888066_4888738_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|433aa|down_1|NZ_CP019903.1_4889965_4891264_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_2|NZ_CP019903.1_4891350_4892988_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_3|NZ_CP019903.1_4893215_4894007_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|745aa|down_4|NZ_CP019903.1_4894102_4896337_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_5|NZ_CP019903.1_4896384_4897686_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_6|NZ_CP019903.1_4897742_4900499_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|447aa|down_7|NZ_CP019903.1_4900729_4902070_-	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|447aa|down_8|NZ_CP019903.1_4902090_4903431_-	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|451aa|down_9|NZ_CP019903.1_4903432_4904785_-	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter
