The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP019903	Escherichia coli strain MDR_56 chromosome, complete genome	4978170	107423	228015	4978170	integrase,protease,tRNA,transposase	Stx2-converting_phage(15.79%)	109	137762:137776	145565:145579
WP_001318028.1|107423_108182_+|protease	metalloprotease LoiP	protease	NA	NA	NA	NA
WP_000105566.1|108272_109193_-	agmatinase	NA	NA	NA	NA	NA
WP_000715526.1|109328_110060_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001295380.1|110205_112182_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA	NA
WP_001297406.1|112190_112322_-	acid stress response protein YqgB	NA	NA	NA	NA	NA
WP_001331575.1|112457_112673_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001062128.1|112976_114131_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	63.2	4.0e-128
WP_001696135.1|114567_115962_+	galactose/proton symporter	NA	NA	NA	NA	NA
WP_001696137.1|116038_116536_+|protease	SprT family zinc-dependent metalloprotease	protease	NA	NA	NA	NA
WP_001305312.1|116630_117338_+	deoxyribonuclease I	NA	NA	NA	NA	NA
WP_001300912.1|117417_118149_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_000593258.1|118161_119112_+	glutathione synthase	NA	NA	NA	NA	NA
WP_000126454.1|119148_119784_+	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_000017111.1|119783_120200_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_001696140.1|120373_121354_-	type IV pilus twitching motility protein PilT	NA	NA	NA	NA	NA
WP_000997795.1|121371_122076_+	pyridoxal phosphate homeostasis protein	NA	NA	NA	NA	NA
WP_001339197.1|122479_123688_-|transposase	IS4-like element ISVsa5 family transposase	transposase	Q9E8P4	Bluetongue_virus	100.0	3.0e-235
WP_001277194.1|123994_124285_+	YggU family protein	NA	NA	NA	NA	NA
WP_001174747.1|124292_124886_+	XTP/dITP diphosphatase	NA	NA	NA	NA	NA
WP_000239950.1|124878_126015_+	radical SAM family heme chaperone HemW	NA	NA	NA	NA	NA
WP_000784004.1|126331_127318_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000577036.1|127362_127866_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_078080897.1|127865_129167_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_000745229.1|129222_130230_-	DUF1202 family protein	NA	NA	NA	NA	NA
WP_000394103.1|130346_131393_-	L-asparaginase 2	NA	NA	NA	NA	NA
WP_000984796.1|131568_132288_-	DUF2884 domain-containing protein	NA	NA	NA	NA	NA
WP_001178590.1|132308_132449_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001107566.1|132471_132798_-	YggL family protein	NA	NA	NA	NA	NA
WP_000786911.1|132797_133517_-|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
WP_001318031.1|133677_134730_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_000091700.1|134757_135033_+	oxidative damage protection protein	NA	NA	NA	NA	NA
WP_000760323.1|135097_136177_+	membrane-bound lytic murein transglycosylase MltC	NA	NA	NA	NA	NA
WP_001298251.1|136378_137635_+	nucleoside permease NupG	NA	NA	NA	NA	NA
WP_001318032.1|137680_139816_-	ornithine decarboxylase	NA	NA	NA	NA	NA
137762:137776	attL	TCCCGGCAATAAATT	NA	NA	NA	NA
WP_000234526.1|140207_140915_+	DUF554 domain-containing protein	NA	NA	NA	NA	NA
WP_000711123.1|141300_142401_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_078080898.1|142443_143973_-	DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_078080899.1|143965_145474_-	AAA family ATPase	NA	A0A2D1GN12	Pseudoalteromonas_phage	31.3	2.6e-42
WP_001696149.1|146278_147004_+	type IV pilus biogenesis outer membrane protein precursor PilL	NA	NA	NA	NA	NA
145565:145579	attR	TCCCGGCAATAAATT	NA	NA	NA	NA
WP_000539880.1|147006_147444_+	type IV pilus biogenesis protein PilM	NA	NA	NA	NA	NA
WP_001696150.1|147633_149259_+	PilN family type IVB pilus formation outer membrane protein	NA	NA	NA	NA	NA
WP_023154742.1|149282_150569_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_000543769.1|150558_151020_+	type IV pilus biogenesis protein PilP	NA	NA	NA	NA	NA
WP_001115301.1|151029_152550_+	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA	NA
WP_001211427.1|152551_153652_+	type II secretion protein F	NA	NA	NA	NA	NA
WP_001011501.1|153702_154239_+	cleavage protein	NA	NA	NA	NA	NA
WP_070127795.1|154297_154774_+	lytic transglycosylase domain-containing protein	NA	A0A0A8J856	Ralstonia_phage	37.0	1.7e-08
WP_021577917.1|154786_155437_+	prepilin peptidase	NA	NA	NA	NA	NA
WP_000381395.1|156228_157800_-|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	58.7	9.9e-170
WP_000624622.1|157819_158167_-	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZDM8	Stx2-converting_phage	76.6	2.6e-46
WP_001682408.1|158166_158844_-|transposase	transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	46.0	3.3e-21
WP_078080900.1|158884_159343_+	shufflon system plasmid conjugative transfer pilus tip adhesin PilV	NA	NA	NA	NA	NA
WP_001067858.1|160577_161282_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	99.6	1.2e-138
WP_000991576.1|161932_162505_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000958152.1|162573_162810_+	AlpA family transcriptional regulator	NA	NA	NA	NA	NA
WP_001167445.1|163087_163636_+	hypothetical protein	NA	NA	NA	NA	NA
WP_021572006.1|163654_164134_-	ProQ/FinO family protein	NA	Q2A0A1	Sodalis_phage	42.5	2.7e-09
WP_001018808.1|164699_165719_-	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	25.8	4.3e-17
WP_001317566.1|165976_166420_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_000699820.1|166498_166771_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_000470229.1|166793_168182_+	PTS ascorbate transporter subunit IIC	NA	NA	NA	NA	NA
WP_001101067.1|168178_169009_+	transketolase	NA	NA	NA	NA	NA
WP_000609007.1|169001_169955_+	transketolase family protein	NA	NA	NA	NA	NA
WP_131501864.1|170217_170331_+|transposase	transposase	transposase	Q6H9S5	Enterobacteria_phage	71.4	3.4e-08
WP_114146034.1|171127_171325_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001298859.1|171439_172981_+|transposase	IS21-like element ISEc12 family transposase	transposase	K4I413	Acidithiobacillus_phage	46.4	1.7e-129
WP_085948178.1|173453_174666_+|transposase	IS3 family transposase	transposase	A0A0N7C1X7	Escherichia_phage	99.7	1.7e-169
WP_078080902.1|175139_176348_+	immunoglobulin-binding protein	NA	Q9MCI8	Enterobacteria_phage	76.1	5.0e-20
WP_001300563.1|176557_177670_-|transposase	IS4-like element IS421 family transposase	transposase	NA	NA	NA	NA
WP_000884153.1|177758_178214_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_000760915.1|178570_178909_-	c-type lysozyme inhibitor	NA	NA	NA	NA	NA
WP_000859647.1|179413_180103_-	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA	NA
WP_000983423.1|180102_181659_-	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_001293448.1|181824_182649_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000551919.1|182806_184150_-	esterase-like activity of phytase family protein	NA	NA	NA	NA	NA
WP_000803220.1|185644_186961_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_089581225.1|187131_187317_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA	NA
WP_001313273.1|187325_187433_+	hypothetical protein	NA	NA	NA	NA	NA
WP_085948178.1|190219_191432_+|transposase	IS3 family transposase	transposase	A0A0N7C1X7	Escherichia_phage	99.7	1.7e-169
WP_000792543.1|195050_197099_-	TonB-dependent siderophore receptor IreA	NA	A0A0P0I887	Acinetobacter_phage	33.5	1.1e-11
WP_113767347.1|197246_198519_+|transposase	IS3 family transposase	transposase	Q9ZXG3	Shigella_phage	97.7	4.1e-174
WP_001075491.1|198630_199362_-	inovirus Gp2 family protein	NA	NA	NA	NA	NA
WP_000778605.1|200031_200562_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000147743.1|201759_202890_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000010392.1|203074_203959_+	GTPase	NA	NA	NA	NA	NA
WP_001097301.1|204077_204755_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001278293.1|204760_204994_+	DUF905 family protein	NA	NA	NA	NA	NA
WP_078080903.1|205083_205902_+	DUF945 domain-containing protein	NA	A0A2C9CX26	Yersinia_phage	39.1	1.4e-47
WP_001696591.1|206167_206647_+	antirestriction protein	NA	A9J566	Pseudomonas_phage	31.0	4.0e-13
WP_001696592.1|206662_207139_+	RadC family protein	NA	NA	NA	NA	NA
WP_000692337.1|207225_207318_+	DUF987 family protein	NA	NA	NA	NA	NA
WP_000633033.1|207812_209243_+|transposase	IS4-like element IS50R family transposase	transposase	NA	NA	NA	NA
WP_000854694.1|209527_209905_+	toxin	NA	NA	NA	NA	NA
WP_086795284.1|210126_210324_+	DUF957 domain-containing protein	NA	NA	NA	NA	NA
WP_001290171.1|210408_211251_+	DUF4942 domain-containing protein	NA	NA	NA	NA	NA
WP_000942807.1|211530_212067_-	type II secretion system protein	NA	NA	NA	NA	NA
WP_078080904.1|212068_213247_-	type II secretion system protein GspL	NA	NA	NA	NA	NA
WP_000633196.1|213243_214221_-	type II secretion system minor pseudopilin GspK	NA	NA	NA	NA	NA
WP_001318033.1|214217_214823_-	type II secretion system minor pseudopilin GspJ	NA	NA	NA	NA	NA
WP_000820091.1|214819_215191_-	type II secretion system minor pseudopilin GspI	NA	NA	NA	NA	NA
WP_001115149.1|215187_215751_-	type II secretion system minor pseudopilin GspH	NA	NA	NA	NA	NA
WP_001087296.1|215754_216210_-	type II secretion system major pseudopilin GspG	NA	NA	NA	NA	NA
WP_001173415.1|216226_217450_-	type II secretion system inner membrane protein GspF	NA	NA	NA	NA	NA
WP_000249319.1|217449_218943_-	type II secretion system ATPase GspE	NA	NA	NA	NA	NA
WP_001318034.1|218942_221003_-	type II secretion system secretin GspD	NA	NA	NA	NA	NA
WP_001696202.1|221032_221992_-	type II secretion system protein GspC	NA	NA	NA	NA	NA
WP_001298257.1|222009_222420_-	GspS/AspS pilotin family protein	NA	NA	NA	NA	NA
WP_001318036.1|222485_223295_-	prepilin peptidase PppA	NA	NA	NA	NA	NA
WP_001034482.1|223458_228015_-|protease	lipoprotein metalloprotease SslE	protease	NA	NA	NA	NA
>prophage 2
NZ_CP019903	Escherichia coli strain MDR_56 chromosome, complete genome	4978170	933862	1016114	4978170	tRNA,integrase,transposase	Escherichia_phage(22.73%)	68	929310:929324	993465:993494
929310:929324	attL	GGGGGCCAGACAGTG	NA	NA	NA	NA
WP_001355495.1|933862_935131_+|integrase	site-specific integrase	integrase	A0A1W6JPG6	Morganella_phage	78.6	2.3e-193
929310:929324	attL	GGGGGCCAGACAGTG	NA	NA	NA	NA
WP_085948178.1|935390_936603_+|transposase	IS3 family transposase	transposase	A0A0N7C1X7	Escherichia_phage	99.7	1.7e-169
WP_114146036.1|936569_937124_+	hypothetical protein	NA	B6SCW4	Bacteriophage	57.9	6.2e-34
WP_078080930.1|937123_939229_+	injection protein	NA	A0A2I7QQN9	Vibrio_phage	37.3	3.6e-90
WP_000087355.1|939248_939863_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000290520.1|940736_941699_+	abortive infection protein	NA	A0A059NT88	Lactococcus_phage	29.4	4.2e-14
WP_000230717.1|941700_942156_-	hypothetical protein	NA	A0A1W6JPI4	Morganella_phage	67.2	2.9e-45
WP_000617439.1|942415_942703_+	PerC family transcriptional regulator	NA	NA	NA	NA	NA
WP_000924289.1|943475_944093_+	trimeric intracellular cation channel family protein	NA	NA	NA	NA	NA
WP_001318113.1|944089_945775_-	NAD-dependent DNA ligase LigB	NA	F8SJM3	Pseudomonas_phage	22.4	7.9e-24
WP_001295237.1|946032_946656_+	guanylate kinase	NA	K4JYM5	Abalone_herpesvirus	34.5	4.1e-18
WP_000135058.1|946710_946986_+	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_000280488.1|947004_949113_+	bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase	NA	A0A291L9W9	Bordetella_phage	34.5	4.8e-10
WP_001070187.1|949119_949809_+|tRNA	tRNA (guanosine(18)-2'-O)-methyltransferase TrmH	tRNA	NA	NA	NA	NA
WP_000678399.1|949814_951896_+	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_000468836.1|952071_953277_-	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_001295238.1|953555_954947_+	xanthine/proton symporter XanP	NA	H9YQ34	environmental_Halophage	100.0	1.4e-71
WP_000668608.1|955067_956777_+	AsmA family protein	NA	NA	NA	NA	NA
WP_001318114.1|956819_957500_-	D-lyxose/D-mannose family sugar isomerase	NA	NA	NA	NA	NA
WP_000559088.1|957480_958413_-	ROK family protein	NA	NA	NA	NA	NA
WP_000961378.1|958460_959321_-	ketose-bisphosphate aldolase	NA	NA	NA	NA	NA
WP_000457133.1|959401_960253_-	class II fructose-bisphosphate aldolase family protein	NA	NA	NA	NA	NA
WP_000654324.1|960264_961356_-	PTS fructose transporter subunit IIC	NA	NA	NA	NA	NA
WP_001028073.1|961380_961695_-	PTS fructose transporter subunit IIB	NA	NA	NA	NA	NA
WP_000355548.1|961712_962183_-	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_001318115.1|962209_963763_-	PRD domain-containing protein	NA	NA	NA	NA	NA
WP_000702930.1|964057_966376_-	alpha-xylosidase	NA	NA	NA	NA	NA
WP_000834421.1|966385_967768_-	glycoside-pentoside-hexuronide family transporter	NA	NA	NA	NA	NA
WP_001218908.1|968454_969639_+|integrase	tyrosine-type recombinase/integrase	integrase	Q7M297	Enterobacteria_phage	69.9	3.4e-162
WP_086937185.1|971619_972423_+|transposase	IS5 family transposase	transposase	A0A0M5M147	Mycobacterium_phage	38.4	1.9e-31
WP_000412211.1|974747_975407_+	type A-1 chloramphenicol O-acetyltransferase	NA	G3CFL0	Escherichia_phage	100.0	8.4e-131
WP_000656305.1|975607_975985_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001067855.1|978772_979477_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_001387387.1|979523_979925_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
WP_000027057.1|980074_980935_-	class A broad-spectrum beta-lactamase TEM-1	NA	Q1MVP3	Enterobacteria_phage	100.0	4.6e-161
WP_001067855.1|981519_982224_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_000240536.1|982979_983831_+	replication protein	NA	NA	NA	NA	NA
983034:983048	attR	CACTGTCTGGCCCCC	NA	NA	NA	NA
WP_001043265.1|984138_984954_+	sulfonamide-resistant dihydropteroate synthase Sul2	NA	NA	NA	NA	NA
983034:983048	attR	CACTGTCTGGCCCCC	NA	NA	NA	NA
WP_001082319.1|985014_985818_+	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	Q75ZG1	Hepacivirus	34.3	4.9e-24
WP_000480968.1|985817_986654_+	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA	NA
WP_001067855.1|986714_987419_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_014966191.1|987465_988764_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_001300294.1|988802_989471_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_000993386.1|989506_989743_-	broad-spectrum mercury transporter MerE	NA	NA	NA	NA	NA
WP_001277456.1|989739_990102_-	mercury resistance co-regulator MerD	NA	NA	NA	NA	NA
WP_000105636.1|990119_991814_-	mercury(II) reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	8.8e-39
WP_001340589.1|991865_992288_-	organomercurial transporter MerC	NA	NA	NA	NA	NA
WP_000732292.1|992323_992599_-	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA	NA
WP_001294663.1|992612_992963_-	mercuric transport protein MerT	NA	NA	NA	NA	NA
WP_000429836.1|993034_993469_+	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_001300563.1|993837_994950_-|transposase	IS4-like element IS421 family transposase	transposase	NA	NA	NA	NA
WP_000844627.1|995821_996064_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_000164043.1|996095_996746_-	tetracycline resistance transcriptional repressor TetR(A)	NA	NA	NA	NA	NA
WP_000804064.1|996851_998051_+	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA	NA
WP_065897011.1|998082_998994_-	EamA family transporter	NA	NA	NA	NA	NA
WP_032144096.1|998927_999665_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_078080931.1|1000381_1000765_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000148641.1|1000930_1001500_-	inovirus Gp2 family protein	NA	NA	NA	NA	NA
WP_072153745.1|1003090_1003369_+	AlpA family transcriptional regulator	NA	NA	NA	NA	NA
WP_001387788.1|1003463_1004066_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000241617.1|1006653_1007526_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001069760.1|1007624_1008497_+	GTPase family protein	NA	NA	NA	NA	NA
WP_000820574.1|1008869_1011716_+	autotransporter adhesin Ag43	NA	NA	NA	NA	NA
WP_001323397.1|1011786_1011945_+	DUF905 family protein	NA	NA	NA	NA	NA
WP_001535681.1|1012099_1012918_+	DUF945 domain-containing protein	NA	A0A2C9CX26	Yersinia_phage	39.7	3.6e-46
WP_078080932.1|1013259_1013754_+	antirestriction protein	NA	NA	NA	NA	NA
WP_001016257.1|1013811_1014558_-	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	31.6	3.5e-24
WP_001298859.1|1014572_1016114_-|transposase	IS21-like element ISEc12 family transposase	transposase	K4I413	Acidithiobacillus_phage	46.4	1.7e-129
>prophage 3
NZ_CP019903	Escherichia coli strain MDR_56 chromosome, complete genome	4978170	1559214	1632646	4978170	tRNA,transposase	Enterobacteria_phage(21.43%)	60	NA	NA
WP_000003806.1|1559214_1560732_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	38.0	2.7e-87
WP_000856819.1|1560968_1562426_-	dipeptide/tripeptide permease DtpC	NA	A0A0P0IY73	Acinetobacter_phage	29.6	1.8e-48
WP_001295383.1|1562484_1564632_-	lysine decarboxylase CadA	NA	NA	NA	NA	NA
WP_000092909.1|1564711_1566046_-	cadaverine/lysine antiporter	NA	NA	NA	NA	NA
WP_001187195.1|1566411_1567950_-	DNA-binding transcriptional activator CadC	NA	NA	NA	NA	NA
WP_000779483.1|1568832_1569159_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_001143297.1|1569155_1569419_-	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA	NA
WP_001280433.1|1569490_1570357_-	DUF4942 domain-containing protein	NA	NA	NA	NA	NA
WP_000839291.1|1570441_1570639_-	DUF957 domain-containing protein	NA	NA	NA	NA	NA
WP_000761676.1|1570650_1571139_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000854735.1|1571135_1571513_-	toxin	NA	NA	NA	NA	NA
WP_001285415.1|1571559_1571934_-	type IV toxin-antitoxin system YeeU family antitoxin	NA	NA	NA	NA	NA
WP_000692309.1|1572013_1572235_-	DUF987 domain-containing protein	NA	A0A142F0X9	Klebsiella_phage	45.8	8.5e-11
WP_001366855.1|1572297_1572774_-	RadC family protein	NA	NA	NA	NA	NA
WP_000844100.1|1572789_1573269_-	antirestriction protein	NA	A0A2D0W9W4	Bordetella_phage	33.8	8.9e-13
WP_001175148.1|1573350_1574169_-	DUF945 domain-containing protein	NA	A0A2C9CX26	Yersinia_phage	40.1	2.5e-47
WP_001278287.1|1574258_1574492_-	DUF905 family protein	NA	NA	NA	NA	NA
WP_001097302.1|1574497_1575175_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000010402.1|1576205_1577090_-	GTPase	NA	NA	NA	NA	NA
WP_000147748.1|1577274_1578405_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001075482.1|1579894_1580626_+	inovirus Gp2 family protein	NA	NA	NA	NA	NA
WP_001389195.1|1581049_1581754_-	toll/interleukin-1 receptor domain-containing protein	NA	NA	NA	NA	NA
WP_001126801.1|1583331_1583898_+	inovirus-type Gp2 protein	NA	NA	NA	NA	NA
WP_078080945.1|1584155_1584728_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000958154.1|1584796_1585033_+	AlpA family transcriptional regulator	NA	NA	NA	NA	NA
WP_001167431.1|1585301_1585850_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001323513.1|1586185_1586377_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032346664.1|1587969_1588083_+|transposase	transposase	transposase	Q6H9S5	Enterobacteria_phage	74.3	1.2e-08
WP_078080946.1|1588904_1590179_+	immunoglobulin-binding protein	NA	Q9MCI8	Enterobacteria_phage	76.1	5.2e-20
WP_001300563.1|1590388_1591501_-|transposase	IS4-like element IS421 family transposase	transposase	NA	NA	NA	NA
WP_000884153.1|1591589_1592045_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_000661609.1|1595334_1596297_-	carbamate kinase family protein	NA	NA	NA	NA	NA
WP_001084509.1|1596323_1597874_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023351832.1|1597986_1599405_-	DUF1116 domain-containing protein	NA	NA	NA	NA	NA
WP_000027750.1|1599404_1600952_-	acyl-CoA synthetase FdrA	NA	NA	NA	NA	NA
WP_000633033.1|1601543_1602974_+|transposase	IS4-like element IS50R family transposase	transposase	NA	NA	NA	NA
WP_078080948.1|1603388_1603994_-	ankyrin repeat domain-containing protein	NA	Q6VZ28	Canarypox_virus	26.0	1.7e-05
WP_001084376.1|1604381_1605311_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_085948178.1|1607265_1608479_-|transposase	IS3 family transposase	transposase	A0A0N7C1X7	Escherichia_phage	99.7	1.7e-169
WP_094338647.1|1609161_1610434_+|transposase	IS3 family transposase	transposase	Q9ZXG3	Shigella_phage	95.0	6.1e-170
WP_000422706.1|1610691_1611111_+	IS66 family insertion sequence hypothetical protein	NA	Q6H9S5	Enterobacteria_phage	90.7	1.3e-44
WP_000624710.1|1611107_1611458_+	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZBY2	Stx2-converting_phage	64.7	3.6e-40
WP_001389184.1|1612478_1613711_-	MFS transporter	NA	NA	NA	NA	NA
WP_001389183.1|1613725_1614103_-	RidA family protein	NA	NA	NA	NA	NA
WP_000765976.1|1614124_1615084_-	sugar phosphate isomerase/epimerase	NA	NA	NA	NA	NA
WP_000836532.1|1615269_1615932_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_001324285.1|1616049_1616196_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000107666.1|1616864_1617785_+	aminoimidazole riboside kinase	NA	NA	NA	NA	NA
WP_000277213.1|1617952_1619470_+	carbohydrate porin	NA	NA	NA	NA	NA
WP_000344909.1|1619530_1620901_+	PTS sucrose transporter subunit IIBC	NA	NA	NA	NA	NA
WP_023181052.1|1620900_1622310_+	sucrose-6-phosphate hydrolase	NA	F8WPR5	Bacillus_phage	22.9	1.1e-15
WP_001232703.1|1622335_1623343_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_000335224.1|1623894_1624368_-	H-NS histone family protein	NA	NA	NA	NA	NA
WP_001389182.1|1624686_1625424_+	porin family protein	NA	NA	NA	NA	NA
WP_000785681.1|1625843_1626740_+	WYL domain-containing protein	NA	NA	NA	NA	NA
WP_001696575.1|1626788_1627868_+	hypothetical protein	NA	NA	NA	NA	NA
WP_078080950.1|1627914_1629486_+	cobalamin adenosyltransferase	NA	NA	NA	NA	NA
WP_000766272.1|1629482_1629749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001238008.1|1629888_1630086_+	hypothetical protein	NA	NA	NA	NA	NA
WP_085948178.1|1631433_1632646_+|transposase	IS3 family transposase	transposase	A0A0N7C1X7	Escherichia_phage	99.7	1.7e-169
>prophage 4
NZ_CP019903	Escherichia coli strain MDR_56 chromosome, complete genome	4978170	2171157	2232957	4978170	integrase,transposase	Escherichia_phage(16.67%)	57	2179812:2179871	2224587:2225904
WP_001352368.1|2171157_2172366_-|transposase	IS4-like element ISVsa5 family transposase	transposase	A0A0F7LAS3	uncultured_marine_virus	100.0	1.8e-235
WP_001213776.1|2172573_2172807_-	DUF905 family protein	NA	NA	NA	NA	NA
WP_000682723.1|2172924_2173377_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000633033.1|2173822_2175253_-|transposase	IS4-like element IS50R family transposase	transposase	NA	NA	NA	NA
WP_000680181.1|2175354_2175984_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000238685.1|2176039_2176546_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000102646.1|2176635_2177706_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_000203555.1|2177702_2178608_-	chemotaxis protein	NA	NA	NA	NA	NA
2179812:2179871	attL	AGTGAGTGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGAACTCAGGCTGCCAG	NA	NA	NA	NA
WP_085948178.1|2179859_2181073_-|transposase	IS3 family transposase	transposase	A0A0N7C1X7	Escherichia_phage	99.7	1.7e-169
WP_001704211.1|2182335_2185158_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001024300.1|2185278_2185761_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_000862929.1|2185782_2186292_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001304891.1|2187978_2188749_-	2-oxoglutaramate amidase	NA	NA	NA	NA	NA
WP_000532690.1|2188902_2189376_+	C-lysozyme inhibitor	NA	NA	NA	NA	NA
WP_000973126.1|2189418_2191863_-	acyl-CoA dehydrogenase FadE	NA	NA	NA	NA	NA
WP_000284050.1|2192102_2192681_+	D-sedoheptulose 7-phosphate isomerase	NA	A0A067XQR2	Caulobacter_phage	32.0	1.1e-14
WP_001304889.1|2192885_2193653_+	class II glutamine amidotransferase	NA	NA	NA	NA	NA
WP_001225680.1|2193623_2194364_-	murein L,D-transpeptidase	NA	NA	NA	NA	NA
WP_000093934.1|2194675_2195425_+	C40 family peptidase	NA	A0A1V0DZX6	Clostridioides_phage	37.7	1.5e-19
WP_001304888.1|2195699_2197439_-	flagellar type III secretion system protein FlhA	NA	NA	NA	NA	NA
WP_000207550.1|2197383_2198169_+	putative lateral flagellar export/assembly protein LafU	NA	NA	NA	NA	NA
WP_001226161.1|2198239_2199295_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_001059897.1|2199291_2199744_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001304886.1|2199921_2201073_+	RNA ligase RtcB family protein	NA	A0A222ZMP7	Mycobacterium_phage	31.8	2.1e-31
WP_000602135.1|2201069_2201684_+	peptide chain release factor H	NA	NA	NA	NA	NA
WP_001293000.1|2201740_2203198_-	cytosol nonspecific dipeptidase	NA	NA	NA	NA	NA
WP_001291991.1|2203458_2203917_+	xanthine phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_000189578.1|2204008_2205253_+	esterase FrsA	NA	NA	NA	NA	NA
WP_000174685.1|2205310_2205712_+	sigma factor-binding protein Crl	NA	NA	NA	NA	NA
WP_000749899.1|2205750_2206806_-	phosphoporin PhoE	NA	Q1MVN1	Enterobacteria_phage	60.6	3.5e-118
WP_001285288.1|2207094_2208198_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.1e-61
WP_000893310.1|2208209_2209463_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	47.0	3.7e-95
WP_016234638.1|2209818_2211033_+|integrase	tyrosine-type recombinase/integrase	integrase	Q7M297	Enterobacteria_phage	56.2	8.3e-132
WP_000035054.1|2211461_2211665_+	AlpA family transcriptional regulator	NA	A0A1V0E8E5	Vibrio_phage	50.9	4.7e-08
WP_000412538.1|2211664_2212096_+	hypothetical protein	NA	A0A1W6JPH9	Morganella_phage	49.0	3.9e-28
WP_001019362.1|2212108_2212942_+	hypothetical protein	NA	G9L6G1	Escherichia_phage	47.5	5.3e-21
WP_000476150.1|2212934_2213117_+	DUF4222 domain-containing protein	NA	NA	NA	NA	NA
WP_001065738.1|2214131_2214326_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001024675.1|2214322_2214586_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000181940.1|2214582_2214804_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001058743.1|2214796_2215399_+	hypothetical protein	NA	A0A286S1S7	Klebsiella_phage	36.3	2.0e-25
WP_038432190.1|2215409_2215751_+	hypothetical protein	NA	A0A1B5FPL8	Escherichia_phage	63.3	1.1e-33
WP_001208878.1|2215743_2216115_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038432192.1|2216101_2218453_+	helicase	NA	A0A1W6JPG0	Morganella_phage	47.9	1.1e-71
WP_000987941.1|2218629_2218860_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001064135.1|2218849_2219587_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000420670.1|2220367_2220829_+	DUF2824 family protein	NA	Q2A0B3	Sodalis_phage	72.2	9.9e-62
WP_000909176.1|2220822_2221500_+	hypothetical protein	NA	Q2A0B2	Sodalis_phage	71.6	7.0e-56
WP_078080968.1|2221499_2222921_+	phage DNA ejection protein	NA	B6SCW4	Bacteriophage	53.2	2.2e-123
WP_085948178.1|2223384_2224597_+|transposase	IS3 family transposase	transposase	A0A0N7C1X7	Escherichia_phage	99.7	1.7e-169
WP_016231257.1|2226401_2226839_-	hypothetical protein	NA	I6S5X4	Salmonella_phage	33.1	3.1e-12
2224587:2225904	attR	CTGGCAGCCTGAGTTCACAGATAAAACACTCTCCAGGAAACCCGGGGCGGTTCACTCACTCAGCATGGATGCTCTAAAAGCTCGATGGTCTCAACTTTTCGGCTCTGACGCATCTCAGGAAAAGATTCTTCAGAGCATGGGAGCGAAATTAAGGCAGGATGAGAAGGGTAACACTATCGTTTCCCTGCCATCCGGTGATTATGCTCTGAACAAGCCGGGTTTATCGCCGCAAGACGTGGCATCGTTTCTGGCTAATGCGCTGGCGTTTACACCAGCGGGCAGGGCCGGAACGGTGCTGGGGGCCATAGGGAAATCAGCAGCTACAGATTTAGCACTACAGGGAGCCACCAGCCTTGCTGGTGGAGAAGATATTGATCCGTTACAAACGGTAATTTCTGCTGGCATTGGCGGCATTGGTAAGGGGCTGGAGAATACAGCGAGTGCGGTTTCGAGGGCTGTTCGTGGTGATATGGCACCGGAAGCGAAAGCTGCTGTTGATTTTGCATCGGAAAGAAACCTGCCGTTAATGACCAGTGACGTACTGAAAGATAAAAACACTGTGCAGAGTCTGGCCCAGAAAACAGGCGAAAAAATCCCTTTTTTTGGAACGGGTACGAACAGGTTGAATCAACAACAGGCACGGGAAAATCTGGTCAGAACATATAACGATGGTCTGGGAGGTATTTCAGATAAACAGCTTTATGAATCTGCGACTAAAGGGCAGCAAAAATTCATTGAGGCCGCAGGAAAGCGATATAACCGCATAATTGACGCTATGGGGGATACCCCTGTCGATCTCTCAAACACGGTAAAAGCTATCGACAATCAGATTGCCGTGTTAAGCCGCCCGGGCAAATCTCAGGATAGAGCCGCGGTAAAAGTCTTGCAGCAATTTAAAGACGATATCACCAGCGGACCAAATGACCTGCGTCTGGCGAGAGAAAACAGAACTGACCTTCGAAAGCGGTTCATGAATTCAAACGAGACAGTTGATAAAGACACGCTCCAGAAAGCCAGCGATATTGTCTACAAGGCATATACGCTGGATATGAGAAGGGCAGTAGCCCAGAAACTGGGTTCAGAAGAAGCAGCCAATATGGCAAGGGTCGATCGCTCATGGTCTAAATTCAATGACATGATGGGAAGAACGCGCGTTCAGAAGGCAATAGCCAGCGGCAAGGCTACGCCTGAGGATGTAACAAAACTCGTTTTTAGCCAAAGCTCATCAGAACGTTCTCAGCTTTACAGGCTTCTGGATGACAACGGCAGGCAGAACGCACGGGCAGCCATAATACAGAATGCTGTAGATAAGGCGACT	NA	NA	NA	NA
WP_000290520.1|2227673_2228636_+	abortive infection protein	NA	A0A059NT88	Lactococcus_phage	29.4	4.2e-14
WP_000230717.1|2228637_2229093_-	hypothetical protein	NA	A0A1W6JPI4	Morganella_phage	67.2	2.9e-45
WP_000617439.1|2229352_2229640_+	PerC family transcriptional regulator	NA	NA	NA	NA	NA
WP_000772639.1|2230152_2230491_+	DUF4102 domain-containing protein	NA	E5AGD0	Erwinia_phage	48.6	5.6e-22
WP_001298126.1|2230925_2231450_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001339197.1|2231748_2232957_+|transposase	IS4-like element ISVsa5 family transposase	transposase	Q9E8P4	Bluetongue_virus	100.0	3.0e-235
>prophage 5
NZ_CP019903	Escherichia coli strain MDR_56 chromosome, complete genome	4978170	2466555	2526316	4978170	integrase,protease,tRNA,transposase	Planktothrix_phage(10.0%)	51	2492141:2492175	2527204:2527238
WP_001317662.1|2466555_2467179_-|protease	multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1	protease	NA	NA	NA	NA
WP_001110563.1|2467149_2467836_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.1	4.5e-34
WP_000561840.1|2467832_2470247_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001157969.1|2470959_2472054_-|tRNA	tRNA 2-selenouridine(34) synthase MnmH	tRNA	NA	NA	NA	NA
WP_000460118.1|2472122_2473049_-	HTH-type transcriptional activator AllS	NA	NA	NA	NA	NA
WP_000776388.1|2473278_2473761_+	ureidoglycolate lyase	NA	NA	NA	NA	NA
WP_000141275.1|2473838_2474654_+	HTH-type transcriptional repressor AllR	NA	NA	NA	NA	NA
WP_001309310.1|2474743_2476525_+	glyoxylate carboligase	NA	E4WLQ6	Ostreococcus_tauri_virus	27.0	7.8e-38
WP_000943546.1|2476537_2477314_+	hydroxypyruvate isomerase	NA	NA	NA	NA	NA
WP_000765839.1|2477413_2478292_+	2-hydroxy-3-oxopropionate reductase	NA	NA	NA	NA	NA
WP_078080979.1|2478461_2479916_+	putative allantoin permease	NA	NA	NA	NA	NA
WP_000006897.1|2479976_2481338_+	allantoinase AllB	NA	NA	NA	NA	NA
WP_000481540.1|2481394_2482696_+	uracil/xanthine transporter	NA	NA	NA	NA	NA
WP_001317663.1|2482717_2483863_+	glycerate 3-kinase	NA	W6LM47	Streptococcus_phage	41.6	1.6e-47
WP_000540944.1|2483991_2484777_-	(S)-ureidoglycine aminohydrolase	NA	NA	NA	NA	NA
WP_001317664.1|2484787_2486023_-	allantoate deiminase	NA	NA	NA	NA	NA
WP_000703886.1|2486044_2487094_-	ureidoglycolate dehydrogenase	NA	NA	NA	NA	NA
WP_000580808.1|2487410_2489078_+	acyl-CoA synthetase FdrA	NA	NA	NA	NA	NA
WP_000495398.1|2489087_2490347_+	DUF1116 domain-containing protein	NA	NA	NA	NA	NA
WP_078080980.1|2490865_2491759_+	carbamate kinase	NA	NA	NA	NA	NA
2492141:2492175	attL	GTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCA	NA	NA	NA	NA
WP_000815523.1|2492291_2493359_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_001295318.1|2493355_2493865_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	NA	NA	NA	NA
WP_000212237.1|2493981_2494704_-	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA	NA
WP_000256002.1|2494706_2495201_-	peptidylprolyl isomerase B	NA	NA	NA	NA	NA
WP_000912345.1|2495374_2496760_+|tRNA	cysteine--tRNA ligase	tRNA	M1PG92	Moumouvirus	34.8	3.9e-45
WP_001143512.1|2496795_2497317_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_000190288.1|2497424_2497637_-	ribosome-associated protein YbcJ	NA	NA	NA	NA	NA
WP_000729156.1|2497638_2498505_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	37.5	1.0e-30
WP_001695516.1|2498859_2499168_-|integrase	tyrosine-type recombinase/integrase	integrase	Q76H30	Enterobacteria_phage	69.3	1.8e-38
WP_001695517.1|2499187_2499487_-|integrase	tyrosine-type recombinase/integrase	integrase	B9UDL9	Salmonella_phage	82.4	5.0e-30
WP_000742375.1|2499899_2500556_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_001357859.1|2500799_2501753_-|protease	omptin family outer membrane protease OmpT	protease	NA	NA	NA	NA
WP_001224560.1|2502410_2503301_-	DUF4434 family protein	NA	NA	NA	NA	NA
WP_032284922.1|2503301_2506274_-	bacteriophage adsorption protein NfrA	NA	NA	NA	NA	NA
WP_032284921.1|2506260_2508327_-	phage adsorption protein NrfB	NA	NA	NA	NA	NA
WP_000253850.1|2508646_2510089_-	Cu(+)/Ag(+) sensor histidine kinase CusS	NA	A0A1V0SGX0	Hokovirus	25.7	3.9e-11
WP_000770953.1|2510078_2510762_-	copper response regulator transcription factor CusR	NA	W8CYM9	Bacillus_phage	35.1	1.0e-30
WP_000074193.1|2510918_2512301_+	Cu(+)/Ag(+) efflux RND transporter outer membrane channel CusC	NA	NA	NA	NA	NA
WP_000709877.1|2512324_2512657_+	Cu(+)/Ag(+) efflux RND transporter periplasmic metallochaperone CusF	NA	NA	NA	NA	NA
WP_000717127.1|2512672_2513896_+	Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit CusB	NA	NA	NA	NA	NA
WP_001695523.1|2513907_2517051_+	Cu(+)/Ag(+) efflux RND transporter permease subunit CusA	NA	S5VTK5	Leptospira_phage	22.4	1.7e-59
WP_000786320.1|2517152_2518529_+	phenylalanine transporter	NA	NA	NA	NA	NA
WP_001153132.1|2518596_2519844_-	mechanosensitive ion channel YbdG	NA	NA	NA	NA	NA
WP_000351450.1|2519951_2520605_-	oxygen-insensitive NAD(P)H nitroreductase	NA	NA	NA	NA	NA
WP_000360948.1|2520683_2521067_-	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA	NA
WP_000682518.1|2521131_2521380_-	DUF1158 domain-containing protein	NA	NA	NA	NA	NA
WP_001130638.1|2521445_2522564_-	glutamate--cysteine ligase	NA	NA	NA	NA	NA
WP_000956465.1|2523005_2523158_+	type I toxin-antitoxin system toxin HokE	NA	NA	NA	NA	NA
WP_001300563.1|2523350_2524463_-|transposase	IS4-like element IS421 family transposase	transposase	NA	NA	NA	NA
WP_000956465.1|2524858_2525011_+	type I toxin-antitoxin system toxin HokE	NA	NA	NA	NA	NA
WP_001300563.1|2525203_2526316_-|transposase	IS4-like element IS421 family transposase	transposase	NA	NA	NA	NA
2527204:2527238	attR	GTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCA	NA	NA	NA	NA
>prophage 6
NZ_CP019903	Escherichia coli strain MDR_56 chromosome, complete genome	4978170	2716831	2766785	4978170	protease,terminase,lysis,integrase,capsid,tail,head,transposase,portal	Enterobacteria_phage(56.36%)	68	2723196:2723213	2777579:2777596
WP_001550841.1|2716831_2717902_-|integrase	tyrosine-type recombinase/integrase	integrase	Q9MCR4	Enterobacteria_phage	99.7	4.3e-201
WP_001303849.1|2717879_2718098_-	excisionase	NA	Q77WA4	Escherichia_phage	100.0	3.7e-35
WP_000545745.1|2718137_2718305_-	hypothetical protein	NA	A5VWB7	Enterobacteria_phage	98.2	2.9e-27
WP_139301440.1|2718547_2719150_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000763367.1|2719360_2719582_-	TraR/DksA family transcriptional regulator	NA	A0A0K2FI84	Escherichia_phage	100.0	2.9e-35
WP_001386642.1|2719680_2719962_-	cell division protein ZapA	NA	A0A0P0ZE02	Stx2-converting_phage	98.9	5.5e-47
WP_000548531.1|2719972_2720164_-	DUF1382 family protein	NA	A0A0P0ZC67	Stx2-converting_phage	100.0	7.3e-27
WP_000682318.1|2720136_2720319_-	DUF1317 domain-containing protein	NA	A0A0N7CHV0	Escherichia_phage	98.3	1.3e-28
WP_052909110.1|2720315_2720996_-	YqaJ viral recombinase family protein	NA	B6DZ61	Enterobacteria_phage	98.7	1.3e-131
WP_000100847.1|2720992_2721778_-	phage recombination protein Bet	NA	A0A1I9LJN0	Stx_converting_phage	100.0	6.3e-149
WP_000995433.1|2721783_2722080_-	host-nuclease inhibitor protein Gam	NA	A0A1I9LJN1	Stx_converting_phage	99.0	6.2e-49
WP_000372941.1|2722155_2722299_-	host cell division inhibitory peptide Kil	NA	A0A1I9LJN2	Stx_converting_phage	100.0	1.2e-18
WP_001198861.1|2722267_2722432_-|protease	protease FtsH-inhibitory lysogeny factor CIII	protease	Q776Q5	Enterobacteria_phage	100.0	1.1e-26
WP_000065371.1|2722504_2722873_-	DUF2528 family protein	NA	M1FPD2	Enterobacteria_phage	99.2	4.5e-65
WP_106421809.1|2723055_2723127_-	hypothetical protein	NA	NA	NA	NA	NA
2723196:2723213	attL	CTTCGAACTCTTCAAATT	NA	NA	NA	NA
WP_001278766.1|2723362_2723857_+	hypothetical protein	NA	K7P861	Enterobacteria_phage	99.4	1.4e-85
WP_001443534.1|2723849_2724173_-	antitermination protein	NA	K7P718	Enterobacteria_phage	98.1	4.2e-51
WP_024233432.1|2724600_2725221_-	hypothetical protein	NA	A4KWT4	Enterobacteria_phage	99.5	6.2e-51
WP_001207141.1|2725217_2725652_-	hypothetical protein	NA	A4KWT5	Enterobacteria_phage	99.3	6.0e-77
WP_001274762.1|2725702_2726416_-	LexA family transcriptional regulator	NA	A4KWS0	Enterobacteria_phage	100.0	1.1e-131
WP_000437875.1|2726516_2726717_+	hypothetical protein	NA	A4KWT7	Enterobacteria_phage	100.0	4.3e-30
WP_000251069.1|2726835_2727129_+	hypothetical protein	NA	A2SY75	Escherichia_phage	100.0	3.7e-46
WP_085948178.1|2727214_2728428_-|transposase	IS3 family transposase	transposase	A0A0N7C1X7	Escherichia_phage	99.7	1.7e-169
WP_000839596.1|2728652_2728868_+|lysis	phage lysis protein EssD	lysis	A5LH82	Enterobacteria_phage	100.0	9.0e-34
WP_001135277.1|2728867_2729365_+	lysozyme RrrD	NA	M1FJA0	Enterobacteria_phage	97.0	5.4e-90
WP_078080990.1|2729361_2729820_+|lysis	lysis protein	lysis	K7PJW6	Enterobacteria_phage	94.7	8.0e-72
WP_021568263.1|2730513_2730783_+	hypothetical protein	NA	A0A1V0E5Q1	Salmonella_phage	98.5	2.4e-31
WP_000079508.1|2731371_2731782_-	DUF1398 family protein	NA	C6ZCX4	Enterobacteria_phage	76.3	1.3e-52
WP_001309326.1|2731839_2732073_-	YlcI/YnfO family protein	NA	A0A0K2FIR8	Escherichia_phage	96.3	2.5e-21
WP_000453576.1|2732461_2733007_+	DNA-packaging protein	NA	A0A0K2FIG2	Enterobacteria_phage	99.4	4.7e-95
WP_021515552.1|2732981_2734907_+|terminase	phage terminase large subunit family protein	terminase	A0A0K2FJ14	Enterobacteria_phage	99.4	0.0e+00
WP_000198149.1|2734903_2735110_+|head,tail	Lambda prophage-derived head-to-tail joining protein W	head,tail	A0A2R9YJL2	Escherichia_phage	100.0	5.8e-30
WP_078080991.1|2735106_2736708_+|portal	phage portal protein	portal	A0A0K2FJC0	Enterobacteria_phage	98.9	5.5e-309
WP_078080992.1|2736688_2738008_+	S49 family peptidase	NA	A0A0K2FI53	Enterobacteria_phage	99.1	4.3e-235
WP_012304872.1|2738017_2738350_+|head	head decoration protein	head	A0A2R9YJN3	Escherichia_phage	96.4	4.6e-53
WP_001365132.1|2738411_2738681_+|capsid	capsid protein	capsid	A0A2I6TCE5	Escherichia_phage	100.0	5.3e-39
WP_016230966.1|2738813_2740049_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2H4JB45	uncultured_Caudovirales_phage	44.9	1.1e-99
WP_000737991.1|2740050_2740278_+	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
WP_001049528.1|2740347_2740884_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000179577.1|2741234_2741540_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000920679.1|2741920_2742106_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001156310.1|2742105_2742297_+	hypothetical protein	NA	A0A286S1P8	Klebsiella_phage	59.3	1.1e-11
WP_001091145.1|2742297_2742519_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000425298.1|2742536_2742836_+	DUF4222 domain-containing protein	NA	NA	NA	NA	NA
WP_000761770.1|2742832_2744584_+	DNA primase	NA	Q7M2A8	Enterobacteria_phage	40.6	2.2e-93
WP_000557480.1|2744873_2745116_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001365134.1|2745127_2745577_+	single-stranded DNA-binding protein	NA	NA	NA	NA	NA
WP_000228111.1|2745795_2746836_+|capsid	phage capsid protein	capsid	C6ZCY2	Enterobacteria_phage	42.1	5.7e-65
WP_000190778.1|2746845_2747187_+|head	head decoration protein	head	NA	NA	NA	NA
WP_001178671.1|2747198_2747582_+	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
WP_016230959.1|2748507_2749443_+	hypothetical protein	NA	NA	NA	NA	NA
WP_097326410.1|2749596_2750361_+|capsid	major capsid protein E	capsid	A0A2I6TCE5	Escherichia_phage	95.3	2.3e-135
WP_000158859.1|2750402_2750789_+	hypothetical protein	NA	A0A2R9YJP4	Escherichia_phage	91.7	1.9e-53
WP_000753006.1|2750800_2751154_+|tail	tail attachment protein	tail	A0A2R9YJJ5	Escherichia_phage	98.3	4.4e-62
WP_001595432.1|2751165_2751744_+|tail	phage tail protein	tail	A0A2R9YJK4	Escherichia_phage	99.0	1.3e-79
WP_000683105.1|2751740_2752136_+|tail	tail protein	tail	A0A0K2FIF4	Enterobacteria_phage	100.0	1.0e-70
WP_078081102.1|2752143_2752884_+|tail	phage tail protein	tail	A0A2I6TC77	Escherichia_phage	98.0	1.2e-130
WP_000479155.1|2752899_2753322_+|tail	phage minor tail protein G	tail	A0A0K2FIQ8	Enterobacteria_phage	99.3	1.9e-72
WP_000459458.1|2753303_2753738_+|tail	phage tail assembly protein T	tail	A0A0K2FJB3	Enterobacteria_phage	99.2	1.5e-64
WP_078080993.1|2753730_2756292_+|tail	phage tail tape measure protein	tail	A0A2R9YJM8	Escherichia_phage	91.4	0.0e+00
WP_000847345.1|2756288_2756618_+|tail	phage tail protein	tail	A0A0K2FIE9	Enterobacteria_phage	98.2	8.1e-58
WP_001152612.1|2756617_2757316_+|tail	phage minor tail protein L	tail	A0A0K2FJ01	Enterobacteria_phage	98.7	2.1e-132
WP_078080994.1|2757320_2758064_+|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	96.8	1.9e-147
WP_000090891.1|2758000_2758633_+|tail	tail assembly protein	tail	A0A2R9YJH6	Escherichia_phage	99.5	2.2e-96
WP_078080995.1|2758693_2762191_+	host specificity protein J	NA	A5LH43	Enterobacteria_phage	97.4	0.0e+00
WP_001233090.1|2762261_2762861_+	Ail/Lom family protein	NA	A5LH44	Enterobacteria_phage	97.5	8.2e-109
WP_078081103.1|2762925_2766204_+|tail	phage tail protein	tail	X2KTY7	Enterobacteria_phage	58.8	6.5e-06
WP_078080996.1|2766203_2766785_+|tail	tail fiber assembly protein	tail	K7PMH7	Enterobacteria_phage	92.7	2.3e-100
2777579:2777596	attR	AATTTGAAGAGTTCGAAG	NA	NA	NA	NA
>prophage 7
NZ_CP019903	Escherichia coli strain MDR_56 chromosome, complete genome	4978170	2874149	2953243	4978170	protease,tRNA,transposase	Bacillus_phage(19.05%)	58	NA	NA
WP_001339197.1|2874149_2875358_-|transposase	IS4-like element ISVsa5 family transposase	transposase	Q9E8P4	Bluetongue_virus	100.0	3.0e-235
WP_000178672.1|2875563_2876532_-	NADH oxidoreductase	NA	NA	NA	NA	NA
WP_000458817.1|2876543_2878196_-	hydroxylamine reductase	NA	NA	NA	NA	NA
WP_000491136.1|2878339_2879239_-	L-lysine exporter LysO	NA	NA	NA	NA	NA
WP_078081003.1|2879695_2880391_-	aquaporin Z	NA	NA	NA	NA	NA
WP_000599806.1|2880815_2882474_+	ATP-dependent endonuclease	NA	NA	NA	NA	NA
WP_129560793.1|2882470_2883427_-	DUF535 domain-containing protein	NA	NA	NA	NA	NA
WP_000746441.1|2883577_2884693_+	macrolide transporter subunit MacA	NA	NA	NA	NA	NA
WP_000188133.1|2884689_2886636_+	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	40.1	1.1e-37
WP_000410785.1|2886708_2886933_-	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	61.2	2.3e-16
WP_000520781.1|2887255_2887576_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	44.4	1.6e-13
WP_000934041.1|2887606_2889883_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.5	1.9e-166
WP_001040187.1|2890928_2891147_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_001241678.1|2891431_2892136_-|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
WP_001202181.1|2892177_2893899_-	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	NA	W8CYL7	Bacillus_phage	25.4	5.8e-22
WP_001043586.1|2893899_2895666_-	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	NA	W8CYL7	Bacillus_phage	24.3	4.1e-23
WP_000537434.1|2895788_2896754_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	44.3	5.5e-62
WP_000228473.1|2897298_2897793_+	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA	NA
WP_078081004.1|2897927_2901995_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	48.7	1.2e-86
WP_032284979.1|2902153_2902765_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_000067755.1|2902775_2904119_+	replication-associated recombination protein RarA	NA	G3MBE0	Bacillus_virus	40.8	2.1e-80
WP_000886683.1|2904209_2905502_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	48.2	1.5e-94
WP_000850334.1|2905740_2908185_+	dimethylsulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	49.8	8.6e-221
WP_000213098.1|2908195_2908813_+	dimethylsulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	60.6	5.0e-77
WP_000534633.1|2908814_2909678_+	dimethyl sulfoxide reductase anchor subunit DmsC	NA	NA	NA	NA	NA
WP_001300563.1|2909872_2910985_-|transposase	IS4-like element IS421 family transposase	transposase	NA	NA	NA	NA
WP_000165876.1|2911061_2911688_-	hydrolase	NA	NA	NA	NA	NA
WP_000109295.1|2912002_2913151_+	MFS transporter	NA	NA	NA	NA	NA
WP_000918506.1|2913360_2914791_+	amino acid permease	NA	NA	NA	NA	NA
WP_000111043.1|2915000_2915741_-	pyruvate formate lyase 1-activating protein	NA	A0A2P0VNQ0	Tetraselmis_virus	26.5	8.0e-21
WP_001292822.1|2915932_2918215_-	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	41.5	1.0e-162
WP_000642546.1|2918269_2919127_-	formate transporter FocA	NA	NA	NA	NA	NA
WP_000194829.1|2919532_2921293_-	30S ribosomal protein S12 methylthiotransferase accessory protein YcaO	NA	NA	NA	NA	NA
WP_000642852.1|2921422_2922115_+	DUF421 domain-containing protein	NA	NA	NA	NA	NA
WP_000057158.1|2922313_2923402_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	46.8	2.7e-81
WP_000445215.1|2923472_2924756_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_001317748.1|2924925_2925690_+	metallopeptidase YcaL	NA	NA	NA	NA	NA
WP_000125016.1|2925862_2926546_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_000140327.1|2926656_2928330_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_000167336.1|2928489_2928774_+	integration host factor subunit beta	NA	A7KV42	Bacillus_phage	40.2	3.2e-10
WP_000705722.1|2928980_2931245_+	ComEC family protein	NA	NA	NA	NA	NA
WP_000551259.1|2931281_2933030_+	lipid A ABC transporter ATP-binding protein/permease MsbA	NA	W8CYL7	Bacillus_phage	29.8	3.3e-57
WP_000570550.1|2933026_2934013_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_000056558.1|2934049_2935282_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_000350058.1|2935333_2935516_+	protein YcaR	NA	NA	NA	NA	NA
WP_000011622.1|2935512_2936259_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000436910.1|2936412_2937306_+	YcbJ family phosphotransferase	NA	NA	NA	NA	NA
WP_000899580.1|2937282_2938062_-	envelope biogenesis factor ElyC	NA	NA	NA	NA	NA
WP_001304765.1|2938197_2938983_+|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	tRNA	NA	NA	NA	NA
WP_001288856.1|2938979_2940302_+	chromosome partition protein MukF	NA	NA	NA	NA	NA
WP_001295931.1|2940282_2940987_+	chromosome partition protein MukE	NA	NA	NA	NA	NA
WP_000572669.1|2940986_2945447_+	chromosome partition protein MukB	NA	NA	NA	NA	NA
WP_000526135.1|2945622_2946081_+|transposase	IS200/IS605 family transposase	transposase	I4AZI8	Saccharomonospora_phage	32.3	2.9e-13
WP_078081005.1|2946418_2948266_+	L,D-transpeptidase	NA	NA	NA	NA	NA
WP_078081104.1|2948446_2948995_+	YcbK family protein	NA	A0A0K1LKR7	Rhodobacter_phage	33.7	1.2e-05
WP_001109449.1|2949021_2949669_+	hydroxyacylglutathione hydrolase GloC	NA	NA	NA	NA	NA
WP_000462684.1|2949719_2950910_-	aspartate transaminase	NA	NA	NA	NA	NA
WP_085948178.1|2952030_2953243_+|transposase	IS3 family transposase	transposase	A0A0N7C1X7	Escherichia_phage	99.7	1.7e-169
>prophage 8
NZ_CP019903	Escherichia coli strain MDR_56 chromosome, complete genome	4978170	3144806	3213778	4978170	protease,terminase,integrase,lysis,capsid,tail,plate,tRNA,transposase,holin,head,portal	Shigella_phage(43.64%)	86	3149397:3149456	3213731:3215265
WP_032285083.1|3144806_3145913_-|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_000476093.1|3145966_3146428_-	phosphatase NudJ	NA	NA	NA	NA	NA
WP_001248691.1|3146437_3147091_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA	NA
WP_000444487.1|3147262_3148513_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	100.0	3.8e-23
3149397:3149456	attL	GCTGTCTCTTGATCAGATCTTGATCCCCTGCGCCATCAGATCCTTGGCGGCAAGAAAGCC	NA	NA	NA	NA
WP_000633033.1|3149408_3150839_-|transposase	IS4-like element IS50R family transposase	transposase	NA	NA	NA	NA
WP_001527052.1|3152511_3153627_+	macro domain-containing protein	NA	A0A2D1GR68	Pseudomonas_phage	39.0	3.6e-25
WP_001527051.1|3153838_3154966_-|integrase	tyrosine-type recombinase/integrase	integrase	O21925	Phage_21	61.2	2.5e-122
WP_001527050.1|3154946_3155192_-	phage excisionase	NA	NA	NA	NA	NA
WP_032285084.1|3155247_3155784_-	HD family hydrolase	NA	A5LH62	Enterobacteria_phage	92.6	1.8e-91
WP_032285085.1|3155912_3156737_-	DUF2303 family protein	NA	U5P439	Shigella_phage	98.5	1.5e-148
WP_000135665.1|3156802_3157165_-	hypothetical protein	NA	Q8SBF8	Shigella_phage	99.2	2.5e-60
WP_001307125.1|3157444_3157786_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001005197.1|3157723_3158032_-	hypothetical protein	NA	I6PDF6	Cronobacter_phage	80.0	5.0e-09
WP_000848748.1|3158205_3158880_-	LexA family transcriptional repressor	NA	U5P0T5	Shigella_phage	100.0	1.2e-132
WP_000649480.1|3158970_3159171_+	transcriptional regulator	NA	U5P445	Shigella_phage	98.5	1.9e-30
WP_000515830.1|3159214_3159766_+	protein YmfL	NA	S5FXP0	Shigella_phage	98.4	2.2e-100
WP_001250269.1|3159941_3160121_+	DUF4222 domain-containing protein	NA	S5M7S5	Escherichia_phage	68.5	7.8e-15
WP_000104943.1|3160110_3161052_+	helix-turn-helix domain-containing protein	NA	U5P0A0	Shigella_phage	93.0	4.9e-140
WP_077249478.1|3161048_3161543_+	PerC family transcriptional regulator	NA	A0A0P0ZCF0	Stx2-converting_phage	96.9	1.8e-85
WP_001371856.1|3161542_3162196_+	phage N-6-adenine-methyltransferase	NA	A5LH72	Enterobacteria_phage	98.6	4.0e-125
WP_000210188.1|3162192_3162519_+	LexA family transcriptional regulator	NA	A5LH73	Enterobacteria_phage	99.1	3.5e-53
WP_016244991.1|3162515_3162905_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A0P0ZD39	Stx2-converting_phage	97.7	1.0e-67
WP_001061404.1|3162924_3163722_+	KilA-N domain-containing protein	NA	A0A0P0ZCS0	Stx2-converting_phage	100.0	5.2e-151
WP_001371855.1|3163729_3164719_+	DUF968 domain-containing protein	NA	A0A291AWV9	Escherichia_phage	99.4	3.3e-195
WP_001205470.1|3164736_3165093_+	antitermination protein	NA	A0A0P0ZCW0	Stx2-converting_phage	92.0	2.3e-58
WP_000150293.1|3165072_3166287_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001120496.1|3167755_3168082_+|holin	phage holin, lambda family	holin	U5P0K7	Shigella_phage	99.1	1.2e-56
WP_001197765.1|3168085_3168562_+	glycoside hydrolase family protein	NA	K7PKX1	Enterobacterial_phage	96.8	8.6e-85
WP_077249476.1|3168778_3168961_+|lysis	prophage lysis lipoprotein RzoD	lysis	K7PHU6	Enterobacteria_phage	96.7	3.2e-16
WP_001526898.1|3169054_3169345_-	increased serum survival lipoprotein Iss	NA	C6ZCX3	Enterobacteria_phage	91.7	1.0e-43
WP_001135221.1|3169869_3170220_+	HNH endonuclease	NA	Q8HA82	Salmonella_phage	94.8	2.0e-62
WP_000929184.1|3170345_3170840_+|terminase	phage terminase small subunit P27 family	terminase	U5P067	Shigella_phage	100.0	2.3e-88
WP_103852454.1|3171073_3172570_+|terminase	terminase large subunit	terminase	A0A1C9IIA1	Salmonella_phage	99.2	4.8e-299
WP_000605606.1|3172581_3172764_+	hypothetical protein	NA	S5FXQ9	Shigella_phage	100.0	1.7e-25
WP_000466255.1|3172763_3174005_+|portal	phage portal protein	portal	U5P411	Shigella_phage	99.8	2.0e-242
WP_001193631.1|3173982_3174633_+|head,protease	HK97 family phage prohead protease	head,protease	U5P4H2	Shigella_phage	100.0	2.5e-119
WP_000257492.1|3174647_3175853_+|capsid	phage major capsid protein	capsid	U5P0G9	Shigella_phage	99.5	9.1e-224
WP_032285137.1|3175901_3176102_+	hypothetical protein	NA	S5FNU1	Shigella_phage	95.5	3.2e-25
WP_000927710.1|3176104_3176428_+|head,tail	phage gp6-like head-tail connector protein	head,tail	S5FKK6	Shigella_phage	100.0	5.1e-57
WP_000702398.1|3176424_3176835_+|head	phage head closure protein	head	M1FJ87	Enterobacteria_phage	100.0	3.1e-75
WP_000213503.1|3176809_3177316_+	hypothetical protein	NA	M1FPE2	Enterobacteria_phage	99.4	3.2e-90
WP_032285136.1|3177312_3177873_+	hypothetical protein	NA	Q8SBH4	Shigella_phage	99.5	1.8e-105
WP_000497757.1|3177881_3178052_+	DUF2635 domain-containing protein	NA	Q8SBH3	Shigella_phage	98.2	2.7e-25
WP_032285135.1|3178035_3179532_+|tail	tail sheath protein	tail	M1FN90	Enterobacteria_phage	99.4	7.0e-274
WP_000090997.1|3179531_3179888_+	hypothetical protein	NA	U5P076	Shigella_phage	99.2	9.0e-63
WP_000661054.1|3179887_3180157_+|tail	phage tail assembly protein	tail	M1FPE4	Enterobacteria_phage	100.0	3.5e-43
WP_078081017.1|3180298_3182134_+|tail	phage tail tape measure protein	tail	Q8SBG9	Shigella_phage	97.7	1.3e-306
WP_032285133.1|3182194_3183523_+	DNA circularization protein	NA	Q8SBG8	Shigella_phage	98.4	7.9e-245
WP_032285132.1|3183519_3184599_+|plate	baseplate protein	plate	U5P0H6	Shigella_phage	98.6	2.5e-204
WP_001259084.1|3184598_3185147_+|plate	phage baseplate assembly protein	plate	U5P081	Shigella_phage	98.9	5.1e-97
WP_000424747.1|3185146_3185572_+	hypothetical protein	NA	U5P0R9	Shigella_phage	99.3	2.0e-80
WP_032285131.1|3185558_3186617_+|plate	baseplate J/gp47 family protein	plate	M1FQW3	Enterobacteria_phage	98.6	4.7e-200
WP_032285130.1|3186607_3187192_+	YmfQ family protein	NA	O22003	Shigella_phage	97.9	1.7e-111
WP_000554695.1|3187195_3188119_+	hypothetical protein	NA	U5P0I1	Shigella_phage	98.1	4.2e-51
WP_071556292.1|3188093_3188297_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001045545.1|3188262_3188871_-|tail	tail fiber assembly protein	tail	Q9MCR5	Enterobacteria_phage	87.3	7.6e-94
WP_032285129.1|3188870_3189368_-|tail	tail fiber protein	tail	Q9MCR6	Enterobacteria_phage	68.9	1.5e-55
WP_071556291.1|3189398_3189590_+	recombinase family protein	NA	A0A1S6L009	Salmonella_phage	83.3	1.9e-14
WP_000834396.1|3189623_3191513_-	DUF262 domain-containing protein	NA	NA	NA	NA	NA
WP_095501568.1|3192328_3192520_+	isocitrate dehydrogenase	NA	Q77Z09	Phage_21	100.0	4.4e-24
WP_000526135.1|3192715_3193174_+|transposase	IS200/IS605 family transposase	transposase	I4AZI8	Saccharomonospora_phage	32.3	2.9e-13
WP_001695662.1|3193329_3193440_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000373096.1|3193492_3193897_-	DUF1398 domain-containing protein	NA	NA	NA	NA	NA
WP_000332300.1|3194117_3194849_-	DNA-binding transcriptional repressor BluR	NA	Q9EYF2	Enterobacteria_phage	50.5	3.5e-53
WP_001317774.1|3195053_3196265_-	blue light-responsive regulator BluF	NA	NA	NA	NA	NA
WP_000554149.1|3196578_3196815_+	two-component-system connector protein YcgZ	NA	NA	NA	NA	NA
WP_000858021.1|3196857_3197130_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000888778.1|3197158_3197425_+	biofilm/acid-resistance regulator AriR	NA	NA	NA	NA	NA
WP_078081018.1|3197537_3197786_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001246485.1|3198121_3199645_+	cyclic diguanylate phosphodiesterase	NA	NA	NA	NA	NA
WP_001065859.1|3199776_3199995_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077884824.1|3202223_3203057_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	A0A2L1IV18	Escherichia_phage	44.6	1.2e-65
WP_000979972.1|3203114_3203450_-	YmgD family protein	NA	NA	NA	NA	NA
WP_001304448.1|3203453_3203738_-	glycine zipper family protein	NA	NA	NA	NA	NA
WP_000121077.1|3203799_3203973_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001330597.1|3204073_3204259_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001185665.1|3205083_3205350_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_000101055.1|3205353_3206166_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_000072536.1|3206189_3206885_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_001056850.1|3207404_3207773_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000693755.1|3207875_3208277_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001386210.1|3208518_3208812_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000284277.1|3208883_3209543_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_000807627.1|3209619_3210081_+	YcgN family cysteine cluster protein	NA	NA	NA	NA	NA
WP_000897377.1|3210874_3211294_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	62.1	1.2e-37
WP_000633033.1|3212347_3213778_+|transposase	IS4-like element IS50R family transposase	transposase	NA	NA	NA	NA
3213731:3215265	attR	GGCTTTCTTGCCGCCAAGGATCTGATGGCGCAGGGGATCAAGATCTGATCAAGAGACAGCAGCAGGGATATCATTAACGCCGCTACGCGATCTCTGGATGCCATCTGGCAAGCGGGCCATCGCTACCAAAAAGCGGGCGTGATGCTGGGGGATTTCTTCAGTCAGGGAGTCGCGCAGCTCAATTTATTCGATGACAACGCACCGCGCCCCGGGAGTGAGCAATTGATGGCGGTAATGGATACGCTGAATGCTAAAGAGGGCAGAGGAACACTCTATTTTGCCGGGCAGGGGATCCAGCAACAATGGCAGATGAAGCGTGCCATGCTTTCACCATGTTATACAACGCGAAGTTCTGATTTACTGCGGGTCAAATAAACATAGCGGCAGGAAAAAGCGCTCCCGCAGGAGCGCCGAATGGATTAGCGACCGAACAGGTCACGTTTTTTCGCTTTAAACGGCTGGGAAATCACCACCAGCACCGCGACAATCAGGTAAGCGATAAAAATACCGAGCAGCCACTGCGGCATTTCCAGACCTAAAAATTCCCACTGACGCTCGGCGCAATCGCCAGAGGCGACAAACACTTGCGGCACCCATTTATCCAGCGGCAGCCATTCCGGGAAACGAGCCATAAAATCACAGGTCGCAAACGGCGAAGGATAGAGCTGAAGCATGGTGTGCTCGTAAGTTAACTGCACACCGCGGAACGCACTATACAACCAGATAACCATCGCTACATAACGCAGCGGAGTTTTCGGGGCGATCGCGCCAATCAGCGCAGCACCCAGAACGCCGAATAACGCGCAGCGTTCATAAATACAGAGCACGCAAGGTTTCAGTAACATCACATGCTGGAACCACAGCGCCGTCAGTTCCAGTGCCAGAGCAGTAAACGCCATCAACAGCCATGCGCCCCGGCCTTGTGAACATTGGTTCAAAAATCGCAACATAATCATTTCCCTGCAATATGCATAGAGTGCGCAGTTTAAACCAATTCATTCGCTGCGCCACCAGGAGGCAGCAAAAATAGGACGCAATTGGACAATTATCGGGCGAAAAGGCAAACCGGGCATTTATATGCCCGGTAAGTTGTTATCAAAGCGTTGCTATCCAGCCCATTTGCATAAACCATTCGGTTACAGGAGCAAGCGTAAACTCGACGCAGAGCAGCCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGCCATCCACACCATGCGGCCATAAGAGAGACGAATCAATGGCGCGAGTGCAGAGGTCAGCAGGAACAGGAACGCAGCCTGACCGTTCGGCGTAGCGACGGAGGGCAGATTGGTACCGGTATTAATGGCGACCGCCAGCAGCTCATATTGCTTCAACGTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCGTTGATATAAATCGTCCCCACGAAGACGTTATCCGAAATGGATGACAGCAGACCGTTGAAAATATAGAACAACGACAGCTGAGCATGTTCAGATGCCTGCAACACAAACTGAATAATCGGCGAAAACAGTTGTTGGTCGA	NA	NA	NA	NA
>prophage 9
NZ_CP019903	Escherichia coli strain MDR_56 chromosome, complete genome	4978170	3575434	3629481	4978170	protease,terminase,lysis,integrase,tail,transposase,portal	Enterobacteria_phage(45.65%)	63	3601077:3601093	3633010:3633026
WP_078081037.1|3575434_3576016_-|tail	tail fiber assembly protein	tail	K7PMH7	Enterobacteria_phage	91.1	1.7e-98
WP_078081038.1|3576015_3579414_-	short-chain fatty acid transporter	NA	X2KTY7	Enterobacteria_phage	35.5	9.1e-11
WP_001233114.1|3579478_3580078_-	Ail/Lom family outer membrane beta-barrel protein	NA	H6WZM8	Escherichia_phage	93.5	2.5e-105
WP_069914273.1|3580145_3583625_-	host specificity protein J	NA	A0A291AWT4	Escherichia_phage	89.9	0.0e+00
WP_000090847.1|3583685_3584288_-|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	85.1	1.8e-87
WP_078081039.1|3584224_3584968_-|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	95.5	2.3e-145
WP_001152385.1|3584973_3585672_-|tail	phage minor tail protein L	tail	A5LH40	Enterobacteria_phage	100.0	6.0e-135
WP_000447253.1|3585681_3586011_-|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	100.0	1.7e-60
WP_078081040.1|3586010_3589076_-|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	99.2	0.0e+00
WP_001161009.1|3589047_3589377_-|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	100.0	7.6e-56
WP_001384509.1|3589385_3589772_-|tail	phage minor tail protein G	tail	A0A291AWW5	Escherichia_phage	96.9	2.2e-62
WP_001774465.1|3589832_3590576_-|tail	phage tail protein	tail	A0A291AWU6	Escherichia_phage	98.0	9.5e-131
WP_001079398.1|3590586_3590988_-|tail	tail protein	tail	A0A291AWY2	Escherichia_phage	100.0	8.3e-73
WP_000677102.1|3590984_3591563_-|tail	phage tail protein	tail	A5LH33	Enterobacteria_phage	99.5	1.2e-101
WP_001283152.1|3591574_3591850_-	DNA breaking-rejoining protein	NA	K7PH43	Enterobacteria_phage	98.9	8.6e-45
WP_001097052.1|3591842_3592166_-	DUF2190 family protein	NA	K7PLV6	Enterobacteria_phage	99.1	9.4e-51
WP_077791810.1|3592252_3594280_-|protease	Clp protease ClpP	protease	K7PGT6	Enterobacteria_phage	99.4	0.0e+00
WP_001460789.1|3594257_3595733_-|portal	phage portal protein	portal	A5LH29	Enterobacteria_phage	99.2	2.6e-281
WP_001072975.1|3595732_3595945_-	hypothetical protein	NA	A5LH28	Enterobacteria_phage	100.0	1.1e-31
WP_074499962.1|3595941_3598041_-|terminase	phage terminase large subunit family protein	terminase	A5LH27	Enterobacteria_phage	99.3	0.0e+00
WP_000421825.1|3598049_3598589_-	DUF1441 family protein	NA	A5LH26	Enterobacteria_phage	100.0	1.8e-94
WP_000548593.1|3599139_3599346_-	hypothetical protein	NA	A0A0K2FJ18	Enterobacteria_phage	79.4	3.4e-22
WP_001019207.1|3599641_3599815_-	addiction module toxin, GnsA/GnsB family	NA	NA	NA	NA	NA
WP_001443523.1|3599987_3600143_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071526745.1|3600289_3600478_-	cold-shock protein	NA	NA	NA	NA	NA
WP_001356335.1|3600488_3600701_-	cold shock protein CspI	NA	A0A1W6JNX5	Morganella_phage	74.3	1.6e-22
WP_001071776.1|3601064_3601562_-	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
3601077:3601093	attL	TTTTTTATCTCTTAAAG	NA	NA	NA	NA
WP_001092966.1|3601558_3602092_-	lysozyme	NA	K7PLY1	Enterobacteria_phage	93.2	8.4e-97
WP_000189918.1|3602088_3602400_-	DUF1327 domain-containing protein	NA	K7PGU6	Enterobacteria_phage	62.6	5.0e-25
WP_000839562.1|3602404_3602620_-|lysis	phage lysis protein EssD	lysis	A5LH82	Enterobacteria_phage	94.4	1.3e-32
WP_001348108.1|3602871_3603246_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000506936.1|3603417_3603846_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_029380182.1|3604212_3604341_-	DUF3927 family protein	NA	H6WZJ7	Escherichia_phage	96.4	4.7e-06
WP_032285384.1|3605062_3605884_-	antitermination protein	NA	K7P7B9	Enterobacteria_phage	58.6	1.8e-77
WP_000904112.1|3605880_3606255_-	RusA family crossover junction endodeoxyribonuclease	NA	V5URS4	Shigella_phage	62.7	8.4e-35
WP_001695976.1|3606267_3607317_-	DUF968 domain-containing protein	NA	U5P0K4	Shigella_phage	54.0	2.7e-107
WP_001429486.1|3607318_3607597_-	hypothetical protein	NA	I6PCV7	Cronobacter_phage	48.4	4.3e-12
WP_000887491.1|3608055_3608268_-	type I toxin-antitoxin system Hok family toxin	NA	A0A0U2QV81	Escherichia_phage	97.1	1.7e-29
WP_001557860.1|3608312_3608420_+	hypothetical protein	NA	Q7Y2Q9	Escherichia_phage	100.0	3.8e-09
WP_001242074.1|3608826_3609696_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000982358.1|3609785_3611177_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032285383.1|3611444_3611861_-	DUF977 family protein	NA	A0A0U2QQN3	Escherichia_phage	90.3	1.8e-62
WP_032285382.1|3611901_3612972_-	phage replisome organizer	NA	A0A088CD36	Shigella_phage	56.1	7.4e-52
WP_032285381.1|3613043_3613469_-	Rha family transcriptional regulator	NA	NA	NA	NA	NA
WP_001072337.1|3613465_3613720_-	hypothetical protein	NA	A0A2I6PIE5	Escherichia_phage	60.3	2.8e-18
WP_000233320.1|3613799_3614219_+	helix-turn-helix domain-containing protein	NA	A0A2I6PIE7	Escherichia_phage	47.5	4.2e-19
WP_032154077.1|3614516_3614672_+	DUF1391 family protein	NA	M4QQ57	Salicola_phage	51.1	3.4e-06
WP_001716417.1|3614673_3615249_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000854559.1|3615735_3615924_+	cell division inhibition protein DicB	NA	NA	NA	NA	NA
WP_001083273.1|3615920_3616112_+|lysis	lysis protein YdfD	lysis	NA	NA	NA	NA
WP_033561585.1|3616205_3618677_+	exonuclease	NA	A0A192Y6E0	Salmonella_phage	56.7	8.5e-59
WP_001296941.1|3618764_3619001_+	excisionase family protein	NA	S4TND0	Salmonella_phage	50.7	6.1e-15
WP_126870272.1|3619035_3620316_+|integrase	site-specific integrase	integrase	B6DZ48	Enterobacteria_phage	62.3	1.1e-155
WP_001389342.1|3620317_3620446_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000836040.1|3620503_3621523_-	Zn-dependent oxidoreductase	NA	E3SJ82	Synechococcus_phage	26.2	3.3e-17
WP_001295394.1|3621534_3622749_-	starvation-sensing protein RspA	NA	Q6A202	Oenococcus_phage	29.0	1.4e-46
WP_001295395.1|3622954_3623281_-	YnfA family protein	NA	A0A218MNG8	uncultured_virus	55.6	7.6e-24
WP_000705195.1|3623415_3623757_+	DUF1283 family protein	NA	NA	NA	NA	NA
WP_001138584.1|3623791_3624352_+	spermidine N1-acetyltransferase	NA	NA	NA	NA	NA
WP_001445899.1|3624354_3625065_-	YnfC family lipoprotein	NA	NA	NA	NA	NA
WP_001317855.1|3625172_3625478_+	DUF1161 domain-containing protein	NA	NA	NA	NA	NA
WP_078081042.1|3625676_3627134_+	molybdopterin-dependent oxidoreductase	NA	A0A077SK27	Escherichia_phage	50.1	2.3e-120
WP_085948178.1|3628267_3629481_-|transposase	IS3 family transposase	transposase	A0A0N7C1X7	Escherichia_phage	99.7	1.7e-169
3633010:3633026	attR	TTTTTTATCTCTTAAAG	NA	NA	NA	NA
>prophage 10
NZ_CP019903	Escherichia coli strain MDR_56 chromosome, complete genome	4978170	4095391	4101697	4978170		Escherichia_phage(33.33%)	6	NA	NA
WP_072652203.1|4095391_4095937_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	56.5	1.0e-49
WP_072652202.1|4095941_4096820_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	64.1	1.9e-106
WP_001459897.1|4096877_4097777_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	34.8	1.7e-28
WP_072652201.1|4097776_4098862_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	54.2	2.7e-102
WP_000183060.1|4099234_4100128_-	UTP--glucose-1-phosphate uridylyltransferase GalF	NA	A0A127AW70	Bacillus_phage	42.0	1.0e-46
WP_072652200.1|4100302_4101697_-	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	31.9	2.8e-19
>prophage 11
NZ_CP019903	Escherichia coli strain MDR_56 chromosome, complete genome	4978170	4186797	4196239	4978170		Enterobacteria_phage(85.71%)	10	NA	NA
WP_001373529.1|4186797_4187934_+	VWA domain-containing protein	NA	Q9EYF7	Enterobacteria_phage	97.7	1.9e-162
WP_001423058.1|4187930_4189931_+	hypothetical protein	NA	Q9EYF6	Enterobacteria_phage	96.6	0.0e+00
WP_001373589.1|4190055_4190517_+	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	98.7	1.6e-75
WP_001295430.1|4190557_4191028_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	100.0	1.8e-82
WP_000598641.1|4191074_4191794_-	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_001295431.1|4191790_4193476_-	two-component regulatory system sensor histidine kinase BtsS	NA	Q9EYF3	Enterobacteria_phage	99.6	2.5e-304
WP_001240401.1|4193697_4194429_+	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	99.5	9.7e-112
WP_001216963.1|4194488_4194596_+	protein YohO	NA	NA	NA	NA	NA
WP_000783120.1|4194576_4195308_-	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA	NA
WP_000569315.1|4195312_4196239_-	glycine betaine ABC transporter ATP binding protein YehX	NA	G3M9Y6	Bacillus_virus	30.8	2.8e-23
>prophage 12
NZ_CP019903	Escherichia coli strain MDR_56 chromosome, complete genome	4978170	4402410	4480213	4978170	terminase,integrase,plate,capsid,tail,tRNA,transposase,head,holin,portal	Enterobacteria_phage(73.21%)	90	4470626:4470648	4480348:4480370
WP_001283598.1|4402410_4403223_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_001289165.1|4403222_4404236_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_077520339.1|4404301_4405459_-	4-phosphoerythronate dehydrogenase PdxB	NA	A0A2R8FDS8	Brazilian_cedratvirus	29.1	8.7e-22
WP_000023402.1|4405617_4406622_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A0M4RTQ0	Salmonella_phage	55.7	4.5e-99
WP_001390705.1|4406718_4407039_-	helix-turn-helix transcriptional regulator	NA	Q1JS37	Enterobacteria_phage	43.2	1.4e-14
WP_000004249.1|4407152_4407440_+	hypothetical protein	NA	A0A0M4RCW1	Salmonella_phage	52.6	4.3e-23
WP_000200503.1|4407446_4407653_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000813363.1|4407905_4408247_+	DUF4761 family protein	NA	A0A0A7NV42	Enterobacteria_phage	92.2	2.3e-55
WP_000158971.1|4408257_4408545_+	hypothetical protein	NA	A0A0A7NRX5	Enterobacteria_phage	76.8	7.8e-33
WP_000514277.1|4408556_4408799_+	DUF4754 family protein	NA	A0A0A7NQ71	Enterobacteria_phage	100.0	2.3e-38
WP_000021652.1|4408795_4408909_+	hypothetical protein	NA	A0A0A7NPW7	Enterobacteria_phage	97.3	3.3e-11
WP_000985161.1|4408994_4409198_+	hypothetical protein	NA	A0A0A7NPS8	Enterobacteria_phage	86.6	2.9e-26
WP_000153674.1|4409194_4409440_+	winged helix-turn-helix domain-containing protein	NA	A0A0A7NV47	Enterobacteria_phage	98.8	3.3e-40
WP_001274220.1|4409436_4409736_+	hypothetical protein	NA	A0A0A7NRX6	Enterobacteria_phage	90.8	2.8e-41
WP_001326016.1|4409747_4410365_+	hypothetical protein	NA	S5MQL6	Escherichia_phage	46.7	5.3e-10
WP_078081076.1|4410361_4410727_+	hypothetical protein	NA	A0A0A7NRY1	Enterobacteria_phage	96.7	1.1e-60
WP_122987627.1|4410733_4413556_+	replication endonuclease	NA	A0A0A7NQ77	Enterobacteria_phage	96.6	0.0e+00
WP_001504475.1|4413632_4414592_+	plasmid segregation protein parM	NA	A0A0A7NPX4	Enterobacteria_phage	98.4	1.3e-177
WP_000211282.1|4414596_4414911_+	plasmid partition protein	NA	A0A0A7NPT5	Enterobacteria_phage	52.3	4.1e-19
WP_000193205.1|4414994_4415837_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068329.1|4415876_4416374_-	DUF4760 domain-containing protein	NA	NA	NA	NA	NA
WP_001300563.1|4416581_4417694_-|transposase	IS4-like element IS421 family transposase	transposase	NA	NA	NA	NA
WP_000087812.1|4418372_4419419_-|portal	phage portal protein	portal	A0A0A7NPT9	Enterobacteria_phage	100.0	1.5e-206
WP_000613769.1|4419418_4421170_-|terminase	terminase	terminase	A0A0A7NV54	Enterobacteria_phage	99.3	0.0e+00
WP_001262673.1|4421324_4422161_+|capsid	phage capsid scaffolding protein	capsid	A0A0A7NRY7	Enterobacteria_phage	100.0	2.7e-150
WP_001055118.1|4422183_4423236_+|capsid	phage major capsid protein, P2 family	capsid	A0A0A7NQ82	Enterobacteria_phage	100.0	6.8e-199
WP_000632339.1|4423281_4424082_+|terminase	terminase	terminase	A0A0A7NPX9	Enterobacteria_phage	88.3	4.9e-125
WP_001734854.1|4424184_4424679_+|head	head completion/stabilization protein	head	A0A0A7NPU2	Enterobacteria_phage	98.8	6.6e-88
WP_000864897.1|4424678_4424879_+|tail	tail protein	tail	A0A0A7NV57	Enterobacteria_phage	98.5	6.0e-32
WP_001407218.1|4424881_4425205_+|holin	phage holin family protein	holin	A0A0A7NRY9	Enterobacteria_phage	98.1	6.1e-50
WP_000072327.1|4425201_4425594_+	M15 family metallopeptidase	NA	A0A0A7NQ86	Enterobacteria_phage	100.0	5.8e-71
WP_021567178.1|4425590_4425998_+	DUF2570 domain-containing protein	NA	A0A0A7NPY2	Enterobacteria_phage	97.8	2.2e-65
WP_000920594.1|4426135_4426603_+|tail	phage tail protein	tail	A0A0A7NPU6	Enterobacteria_phage	100.0	2.6e-86
WP_032145235.1|4426595_4427231_+	phage virion morphogenesis protein	NA	A0A0A7NV60	Enterobacteria_phage	99.5	3.1e-114
WP_001271932.1|4427227_4427809_+|plate	phage baseplate assembly protein V	plate	A0A0A7NRZ3	Enterobacteria_phage	99.0	8.6e-103
WP_000213447.1|4427805_4428156_+|plate	baseplate assembly protein	plate	A0A0A7NQ90	Enterobacteria_phage	100.0	9.2e-60
WP_001297572.1|4428159_4429056_+|plate	baseplate assembly protein	plate	A0A0A7NPY5	Enterobacteria_phage	99.0	1.2e-156
WP_078081077.1|4429048_4429579_+|tail	phage tail protein I	tail	A0A0A7NPV1	Enterobacteria_phage	98.2	2.1e-92
WP_057080985.1|4429581_4431747_+|tail	phage tail protein	tail	A0A0A7NV63	Enterobacteria_phage	82.9	0.0e+00
WP_000972092.1|4431748_4432276_+|tail	tail fiber assembly protein	tail	A0A0C4UR05	Shigella_phage	94.9	8.9e-91
WP_000972163.1|4432304_4432838_-|tail	tail fiber assembly protein	tail	C9DGR0	Escherichia_phage	98.9	3.2e-96
WP_000905057.1|4433865_4434453_+	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	98.5	1.0e-103
WP_000979945.1|4434488_4434977_-|tail	phage tail protein	tail	A0A0A7NV65	Enterobacteria_phage	99.4	1.4e-85
WP_023351908.1|4434989_4437797_-|tail	phage tail tape measure protein	tail	A0A0A7NRZ9	Enterobacteria_phage	98.0	0.0e+00
WP_000333503.1|4437783_4437939_-|tail	GpE family phage tail protein	tail	A0A0A7NQ96	Enterobacteria_phage	96.1	9.7e-22
WP_000651572.1|4437947_4438322_-|tail	tail protein	tail	A0A0A7NPZ0	Enterobacteria_phage	73.2	9.0e-37
WP_000290462.1|4438377_4438890_-|tail	phage major tail tube protein	tail	A0A0A7NPV8	Enterobacteria_phage	97.1	1.5e-90
WP_000005386.1|4438889_4440074_-|tail	phage tail sheath family protein	tail	A0A0A7NV69	Enterobacteria_phage	98.7	1.8e-224
WP_021567184.1|4440231_4441341_+	phage late control D family protein	NA	A0A0A7NQ97	Enterobacteria_phage	98.6	9.6e-204
WP_000488107.1|4441383_4441644_+	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA	NA
WP_000078920.1|4441834_4441975_+	Hok/Gef family protein	NA	A0A0A7NPZ4	Enterobacteria_phage	100.0	7.0e-19
WP_001173929.1|4442237_4442570_+	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
WP_001504485.1|4442574_4443468_+	type VI secretion protein	NA	NA	NA	NA	NA
WP_000615813.1|4443736_4444732_+	flagella biosynthesis regulator Flk	NA	NA	NA	NA	NA
WP_000127769.1|4444728_4445907_-	MFS transporter	NA	NA	NA	NA	NA
WP_000817178.1|4446171_4447392_-	beta-ketoacyl-ACP synthase I	NA	NA	NA	NA	NA
WP_000683541.1|4447550_4449557_+|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	tRNA	NA	NA	NA	NA
WP_000559761.1|4449677_4449956_-	YfcL family protein	NA	NA	NA	NA	NA
WP_001089248.1|4449989_4450538_-	elongation factor P hydroxylase	NA	NA	NA	NA	NA
WP_000447366.1|4450537_4451347_-	TSUP family transporter	NA	NA	NA	NA	NA
WP_001043840.1|4451346_4452171_-	penicillin-insensitive murein endopeptidase	NA	NA	NA	NA	NA
WP_001297933.1|4452173_4453259_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	47.8	7.0e-90
WP_001298774.1|4453293_4454226_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_000730806.1|4454391_4454943_+	endonuclease SmrB	NA	NA	NA	NA	NA
WP_001317961.1|4455058_4455901_-	DUF2544 domain-containing protein	NA	NA	NA	NA	NA
WP_000730189.1|4455902_4456427_-	fimbrial protein	NA	NA	NA	NA	NA
WP_000822662.1|4456423_4456894_-	fimbrial protein	NA	NA	NA	NA	NA
WP_001317962.1|4456890_4457439_-	fimbrial protein	NA	NA	NA	NA	NA
WP_000160649.1|4457413_4458163_-	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA	NA
WP_001114071.1|4458182_4460822_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA	NA
WP_000033309.1|4460907_4461474_-	fimbrial protein	NA	NA	NA	NA	NA
WP_001195819.1|4462134_4462620_-	phosphohistidine phosphatase SixA	NA	NA	NA	NA	NA
WP_000425039.1|4462822_4464967_-	fatty acid oxidation complex subunit alpha FadJ	NA	NA	NA	NA	NA
WP_078081078.1|4464966_4466277_-	acetyl-CoA C-acyltransferase FadI	NA	NA	NA	NA	NA
WP_001296261.1|4466458_4466743_-	YfcZ/YiiS family protein	NA	NA	NA	NA	NA
WP_021525697.1|4467114_4468455_+	long-chain fatty acid transporter FadL	NA	NA	NA	NA	NA
WP_000776768.1|4468516_4469272_-	phospholipid-binding lipoprotein MlaA	NA	NA	NA	NA	NA
WP_000368131.1|4469565_4470498_+	formate/nitrite transporter family protein	NA	E7DYY8	Enterobacteria_phage	100.0	1.2e-167
4470626:4470648	attL	TTCGATTCCTGCAGGGGACACCA	NA	NA	NA	NA
WP_078081079.1|4470809_4471967_+|integrase	prophage integrase IntS	integrase	K7P7E1	Enterobacteria_phage	99.0	8.2e-222
WP_078081080.1|4472088_4473924_-	hypothetical protein	NA	M4M9L1	Vibrio_phage	33.3	3.8e-64
WP_001325768.1|4474026_4474314_+	Arc family DNA-binding protein	NA	A0A088CPT2	Enterobacteria_phage	65.3	2.7e-25
WP_001085227.1|4474328_4474550_-	hypothetical protein	NA	NA	NA	NA	NA
WP_021563791.1|4474549_4475278_-	hypothetical protein	NA	A0A0P0ZDC0	Stx2-converting_phage	62.7	8.0e-74
WP_078081081.1|4475365_4476088_-	hypothetical protein	NA	H6WRU8	Salmonella_phage	91.7	6.9e-118
WP_000655894.1|4476077_4476251_-	Arc family DNA-binding protein	NA	I6R9A8	Salmonella_phage	89.1	1.5e-18
WP_024139083.1|4476363_4476747_+	Arc family DNA-binding protein	NA	I6RSL2	Salmonella_phage	84.3	3.7e-54
WP_000895335.1|4476791_4477121_+	hypothetical protein	NA	Q9AYY8	Salmonella_phage	99.1	1.7e-52
WP_085948178.1|4477640_4478854_-|transposase	IS3 family transposase	transposase	A0A0N7C1X7	Escherichia_phage	99.7	1.7e-169
WP_078081082.1|4479086_4479284_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001102877.1|4479586_4480213_+	recombinase family protein	NA	A0A0A8WJD4	Clostridium_phage	28.7	1.0e-08
4480348:4480370	attR	TTCGATTCCTGCAGGGGACACCA	NA	NA	NA	NA
>prophage 13
NZ_CP019903	Escherichia coli strain MDR_56 chromosome, complete genome	4978170	4754640	4766053	4978170	integrase	Enterobacteria_phage(70.0%)	12	4748936:4748949	4765778:4765791
4748936:4748949	attL	ATGCCGCTGGTCTG	NA	NA	NA	NA
WP_000162574.1|4754640_4755123_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	46.8	4.0e-29
WP_025491917.1|4755884_4757078_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1B5FPC6	Escherichia_phage	49.8	2.0e-106
WP_077697332.1|4757634_4758729_-	DUF262 domain-containing protein	NA	A0A0R6PKN1	Moraxella_phage	27.7	2.0e-12
WP_025491913.1|4759229_4759802_-	Polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	95.2	4.6e-93
WP_001583072.1|4759875_4760376_-	hypothetical protein	NA	NA	NA	NA	NA
WP_025491912.1|4760372_4761107_-	hypothetical protein	NA	Q7M2A2	Enterobacteria_phage	98.4	3.0e-129
WP_001149160.1|4761658_4761925_+	AlpA family transcriptional regulator	NA	Q7M299	Enterobacteria_phage	100.0	4.9e-45
WP_025491911.1|4761921_4762521_+	ash family protein	NA	Q7M2A7	Enterobacteria_phage	81.8	1.7e-50
WP_001244665.1|4762513_4762801_+	hypothetical protein	NA	Q7M2A0	Enterobacteria_phage	97.9	8.6e-48
WP_000459325.1|4762793_4763249_+	hypothetical protein	NA	Q7M298	Enterobacteria_phage	98.2	8.0e-64
WP_000856729.1|4763384_4763705_+	DUF5375 domain-containing protein	NA	NA	NA	NA	NA
WP_025491910.1|4763719_4766053_+	DNA primase	NA	Q7M2A8	Enterobacteria_phage	99.1	0.0e+00
4765778:4765791	attR	CAGACCAGCGGCAT	NA	NA	NA	NA
>prophage 14
NZ_CP019903	Escherichia coli strain MDR_56 chromosome, complete genome	4978170	4835783	4842923	4978170		Escherichia_phage(83.33%)	6	NA	NA
WP_001272914.1|4835783_4838345_+	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	20.7	7.8e-31
WP_001141285.1|4838450_4839107_+	protein-serine/threonine phosphatase	NA	A0A077SLQ6	Escherichia_phage	46.1	4.3e-50
WP_001272540.1|4839157_4839955_-	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	57.0	1.7e-69
WP_000848000.1|4840120_4841029_+	NAD(P)-dependent oxidoreductase	NA	A0A077SLF7	Escherichia_phage	76.5	1.5e-117
WP_000590398.1|4841025_4842288_+	3-oxo-tetronate kinase	NA	A0A077SLJ7	Escherichia_phage	61.4	1.3e-135
WP_001278992.1|4842284_4842923_+	aldolase	NA	A0A077SK32	Escherichia_phage	74.5	1.8e-82
>prophage 1
NZ_CP019904	Escherichia coli strain MDR_56 plasmid unnamed1, complete sequence	108340	30357	65302	108340	transposase	Escherichia_phage(40.0%)	35	NA	NA
WP_032635071.1|30357_31353_-|transposase	IS110 family transposase	transposase	A0A1S7J231	Thermus_phage	28.3	2.0e-19
WP_023304027.1|31849_32737_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023304028.1|32751_33159_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000509966.1|34902_35508_-	recombinase family protein	NA	A0A1S5Y2X8	uncultured_archaeal_virus	35.3	5.5e-20
WP_001553819.1|35602_38500_+|transposase	Tn3-like element Tn5403 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	37.8	4.2e-182
WP_004099044.1|39394_39796_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004099042.1|39902_40352_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004099040.1|40439_41012_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023338002.1|41103_42072_-	magnesium and cobalt transport protein CorA	NA	NA	NA	NA	NA
WP_005006007.1|42068_42773_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023294902.1|42913_43453_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_023338003.1|43454_43898_-	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA	NA
WP_018716209.1|44044_45004_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004357650.1|45148_46381_+	OsmC family protein	NA	NA	NA	NA	NA
WP_025760400.1|46383_46977_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_004357654.1|46976_48002_+	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA	NA
WP_026227539.1|48398_48974_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004357657.1|49209_49392_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004099027.1|49450_49939_-	DUF417 family protein	NA	NA	NA	NA	NA
WP_001067855.1|50618_51323_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_001567386.1|51526_52003_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_001567387.1|52095_52362_-	DUF1471 domain-containing protein	NA	NA	NA	NA	NA
WP_001567388.1|52502_53123_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001567390.1|53583_54453_-	DMT family transporter	NA	NA	NA	NA	NA
WP_004729622.1|54693_55446_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001567384.1|55885_56890_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_000427614.1|59016_60021_+|transposase	IS110-like element IS5075 family transposase	transposase	NA	NA	NA	NA
WP_045344927.1|60742_61237_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_001567378.1|61226_61688_-	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA	NA
WP_021243014.1|61711_61849_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001567380.1|61922_62429_-	DUF417 family protein	NA	NA	NA	NA	NA
WP_001567381.1|62459_62720_-	DUF1471 domain-containing protein	NA	NA	NA	NA	NA
WP_001567382.1|62932_63490_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001567383.1|63586_63853_-	DUF1471 domain-containing protein	NA	NA	NA	NA	NA
WP_001067855.1|64597_65302_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
>prophage 2
NZ_CP019904	Escherichia coli strain MDR_56 plasmid unnamed1, complete sequence	108340	74692	85708	108340	integrase	Escherichia_phage(37.5%)	15	73093:73105	79799:79811
73093:73105	attL	TGATGAACTGCCT	NA	NA	NA	NA
WP_004197635.1|74692_75487_+|integrase	phage integrase family protein	integrase	I3WFA4	Macacine_betaherpesvirus	88.7	5.5e-52
WP_021312488.1|75573_75771_-	hypothetical protein	NA	NA	NA	NA	NA
WP_006788217.1|75926_76106_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004197649.1|76225_76852_-	ParA family plasmid-partitioning AAA ATPase	NA	A0A222YXS3	Escherichia_phage	43.6	2.9e-40
WP_004197644.1|77499_78375_-	RepB family plasmid replication initiator protein	NA	Q71TL8	Escherichia_phage	56.8	1.1e-82
WP_004197646.1|78786_80058_-	Y-family DNA polymerase	NA	F1C5A5	Cronobacter_phage	64.0	5.2e-153
79799:79811	attR	AGGCAGTTCATCA	NA	NA	NA	NA
WP_001568036.1|80057_80489_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	53.3	2.1e-29
WP_073553741.1|80466_80583_+	hypothetical protein	NA	NA	NA	NA	NA
WP_162781987.1|80895_82383_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	34.5	5.0e-30
WP_162781988.1|82375_82501_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001568038.1|82631_83603_+	hypothetical protein	NA	A0A222YXF2	Escherichia_phage	46.8	1.1e-73
WP_015345000.1|83605_84277_+	mediator of plasmid stability	NA	NA	NA	NA	NA
WP_001568040.1|84339_84570_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014343518.1|84688_84805_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011977792.1|85006_85708_+	DNA methylase	NA	A0A2I7RE86	Vibrio_phage	36.7	2.4e-27
>prophage 1
NZ_CP019905	Escherichia coli strain MDR_56 plasmid unnamed6, complete sequence	142304	0	118262	142304	integrase,transposase	Escherichia_phage(35.0%)	117	85806:85865	110183:111493
WP_001247862.1|532_799_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000218863.1|892_1327_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000117626.1|2055_2556_-	antirestriction protein	NA	G9FHQ1	Rhodococcus_virus	26.5	7.1e-05
WP_000942657.1|3003_4179_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A077SLN2	Escherichia_phage	81.6	7.1e-173
WP_001276260.1|4308_5028_-	plasmid SOS inhibition protein A	NA	NA	NA	NA	NA
WP_000845897.1|5024_5459_-	conjugation system SOS inhibitor PsiB	NA	NA	NA	NA	NA
WP_001145458.1|5513_7472_-	ParB/RepB/Spo0J family partition protein	NA	G8DH78	Emiliania_huxleyi_virus	28.9	4.7e-20
WP_000006012.1|7530_7764_-	DUF905 family protein	NA	NA	NA	NA	NA
WP_001276127.1|7821_8349_-	single-stranded DNA-binding protein	NA	I3PGW4	Xanthomonas_phage	75.2	4.2e-48
WP_001027495.1|9118_9310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015058200.1|9306_9729_-	DUF1380 family protein	NA	NA	NA	NA	NA
WP_014653258.1|9775_10078_-	antirestriction protein	NA	NA	NA	NA	NA
WP_071925369.1|10173_10746_-	YubH family protein	NA	NA	NA	NA	NA
WP_000274500.1|11440_11875_-	DUF1380 domain-containing protein	NA	NA	NA	NA	NA
WP_001104879.1|11888_12110_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000086149.1|12110_12794_-	DNA methylase	NA	A0A2I7RE86	Vibrio_phage	36.4	1.1e-29
WP_014640311.1|12869_13181_-	hypothetical protein	NA	NA	NA	NA	NA
WP_077790361.1|13177_14080_-	DUF1281 domain-containing protein	NA	NA	NA	NA	NA
WP_000618110.1|14497_14746_+	DinI-like family protein	NA	Q2A098	Sodalis_phage	48.0	1.9e-14
WP_000109071.1|14742_15180_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	48.4	8.3e-26
WP_000457492.1|15179_16454_+	Y-family DNA polymerase	NA	F1C5A5	Cronobacter_phage	60.2	1.7e-143
WP_001278818.1|16455_16872_-	recombinase	NA	NA	NA	NA	NA
WP_000688514.1|16864_17845_-	recombinase	NA	A0A0A7NPX4	Enterobacteria_phage	51.4	1.7e-79
WP_000030199.1|18258_18567_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001144036.1|18653_19298_-	ParA family protein	NA	NA	NA	NA	NA
WP_078081109.1|19476_20283_-|integrase	phage integrase family protein	integrase	I3WFA4	Macacine_betaherpesvirus	95.6	4.1e-55
WP_001159871.1|20283_20589_-	type II toxin-antitoxin system toxin CcdB	NA	NA	NA	NA	NA
WP_000813630.1|20590_20809_-	type II toxin-antitoxin system antitoxin CcdA	NA	NA	NA	NA	NA
WP_000952217.1|21386_22475_+	transcriptional repressor PifC	NA	NA	NA	NA	NA
WP_000698737.1|22476_24702_+	phage T7 exclusion protein	NA	NA	NA	NA	NA
WP_000963206.1|24751_25651_-	nucleotide-binding protein	NA	NA	NA	NA	NA
WP_000111771.1|25640_25931_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001261287.1|26226_26457_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_001044768.1|26453_26870_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_000350638.1|27031_29170_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_078081110.1|29523_29781_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000194575.1|29780_30371_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000818556.1|30633_32190_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_000521603.1|32380_32998_+	hypothetical protein	NA	NA	NA	NA	NA
WP_044502555.1|33290_34328_-	permease	NA	NA	NA	NA	NA
WP_001175594.1|34432_34756_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_078081111.1|34916_35225_+	hypothetical protein	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	65.1	6.5e-09
WP_001067855.1|35115_35820_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_002904004.1|35956_36817_+	class A extended-spectrum beta-lactamase SHV-12	NA	A0A077SL40	Escherichia_phage	99.3	2.2e-155
WP_002210513.1|36837_37599_-	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	100.0	1.9e-134
WP_001067855.1|37882_38587_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_001083725.1|39147_39645_+	trimethoprim-resistant dihydrofolate reductase DfrA12	NA	A0A0A0PL85	Bacillus_phage	40.9	7.5e-23
WP_001336345.1|39756_40047_+	DUF1010 domain-containing protein	NA	NA	NA	NA	NA
WP_001206356.1|40052_40844_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA	NA
WP_000679427.1|41007_41355_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA	NA
WP_078081112.1|41348_42188_+	sulfonamide-resistant dihydropteroate synthase Sul1	NA	A0A0B5J4J5	Pandoravirus	26.9	1.1e-10
WP_000376616.1|42315_42519_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000184001.1|42674_43880_+	chromate efflux transporter	NA	NA	NA	NA	NA
WP_000130000.1|43890_44196_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001389365.1|44422_45187_+|transposase	IS6-like element IS6100 family transposase	transposase	A0A077SL39	Escherichia_phage	65.7	4.3e-86
WP_000004159.1|46262_47501_-	MFS transporter	NA	NA	NA	NA	NA
WP_040078663.1|47497_48403_-	Mph(A) family macrolide 2'-phosphotransferase	NA	NA	NA	NA	NA
WP_001067855.1|48524_49229_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_000018329.1|49364_50180_-	aminoglycoside O-phosphotransferase APH(3')-Ia	NA	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	100.0	6.1e-163
WP_001067855.1|50335_51040_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_001067855.1|52344_53049_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_095516966.1|54499_54892_-	H-NS histone family protein	NA	NA	NA	NA	NA
WP_096998908.1|55014_56182_+|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	96.1	3.6e-177
WP_077250371.1|56132_56357_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_065203202.1|56461_57898_+	glutathione synthase	NA	NA	NA	NA	NA
WP_001243650.1|58990_59236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000689410.1|59650_60121_-	thermonuclease family protein	NA	A0A0R6PHV6	Moraxella_phage	37.1	2.8e-19
WP_049195390.1|60248_61085_-	APH(6)-I family aminoglycoside O-phosphotransferase	NA	NA	NA	NA	NA
WP_001082320.1|61084_61888_-	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA	NA
WP_085959879.1|61994_63124_-|transposase	IS3-like element IS1133 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	41.1	1.6e-52
WP_000904906.1|63188_63803_-	recombinase family protein	NA	E5FFF9	Burkholderia_phage	48.6	2.3e-37
WP_061586529.1|64669_65089_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061586528.1|65251_65524_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157918524.1|65854_67471_-	ABC-F type ribosomal protection protein	NA	A0A2I4R674	Erysipelothrix_phage	37.1	8.6e-60
WP_078081115.1|67562_68438_-	SDR family oxidoreductase	NA	W8CYX9	Bacillus_phage	31.6	5.0e-06
WP_000572405.1|69740_70535_-	aminoglycoside O-phosphotransferase APH(3')-IIa	NA	Q75ZG1	Hepacivirus	100.0	9.5e-153
WP_011117595.1|73967_74321_-	transcriptional regulator	NA	A0A2H4J145	uncultured_Caudovirales_phage	48.7	9.7e-25
WP_000907863.1|75596_76628_-	replication initiation protein	NA	NA	NA	NA	NA
WP_001324596.1|77600_77864_+	hypothetical protein	NA	Q7M2A7	Enterobacteria_phage	54.0	6.1e-08
WP_000483804.1|77832_78069_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
WP_001306770.1|78510_79044_+	transcription termination factor NusG	NA	NA	NA	NA	NA
WP_000213859.1|79296_79980_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
WP_000744644.1|80152_80704_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001136187.1|80865_81120_+	PilI type IV pilus biogenesis protein	NA	NA	NA	NA	NA
WP_000494780.1|81286_81583_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075631433.1|82501_83569_+	type IV pilus biogenesis lipoprotein PilL	NA	NA	NA	NA	NA
WP_000539806.1|83568_84006_+	type IV pilus biogenesis protein PilM	NA	NA	NA	NA	NA
WP_000748143.1|84019_85702_+	PilN family type IVB pilus formation outer membrane protein	NA	NA	NA	NA	NA
85806:85865	attL	TGAACCGCCCCGGAAATCCTGGAGACTAAACTCCCTGAGAAAGAGGTAAACAGGATGACT	NA	NA	NA	NA
WP_085948178.1|85859_87072_+|transposase	IS3 family transposase	transposase	A0A0N7C1X7	Escherichia_phage	99.7	1.7e-169
WP_162781989.1|87038_88304_+	type 4b pilus protein PilO2	NA	A0A0N7BTS3	Escherichia_phage	96.0	6.2e-05
WP_001247336.1|88290_88743_+	type IV pilus biogenesis protein PilP	NA	NA	NA	NA	NA
WP_075631434.1|88753_90307_+	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA	NA
WP_001208805.1|90319_91417_+	pilus biosynthesis protein PilR	NA	NA	NA	NA	NA
WP_000959785.1|91434_92049_+	pilus assembly protein PilX	NA	NA	NA	NA	NA
WP_000014116.1|92058_92619_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_001193554.1|92603_93260_+	prepilin peptidase	NA	NA	NA	NA	NA
WP_001302705.1|95699_95855_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001139958.1|95982_97137_+|integrase	integrase	integrase	B5WZU7	Pseudomonas_phage	43.0	1.3e-46
WP_001238927.1|97287_98112_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000976353.1|98197_99400_+	conjugal transfer protein TraF	NA	NA	NA	NA	NA
WP_000977522.1|99459_100044_+	histidine phosphatase family protein	NA	A0A2L1IV13	Escherichia_phage	39.8	7.7e-11
WP_001079808.1|100438_100897_+	IncI1-type conjugal transfer lipoprotein TraH	NA	NA	NA	NA	NA
WP_000646097.1|100893_101712_+	IncI1-type conjugal transfer lipoprotein TraI	NA	NA	NA	NA	NA
WP_001024972.1|101708_102857_+	plasmid transfer ATPase TraJ	NA	NA	NA	NA	NA
WP_001299214.1|102853_103144_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000014584.1|103158_103710_+	phospholipase D family protein	NA	A0A1B2LRT6	Wolbachia_phage	33.9	1.5e-19
WP_032072594.1|103799_107567_+	sogL	NA	A0A1B0VML8	Pseudomonas_phage	29.4	2.0e-19
WP_001055900.1|107584_107932_+	conjugal transfer protein	NA	NA	NA	NA	NA
WP_032072593.1|107928_108621_+	conjugal transfer protein TraM	NA	NA	NA	NA	NA
WP_085948178.1|108974_110188_-|transposase	IS3 family transposase	transposase	A0A0N7C1X7	Escherichia_phage	99.7	1.7e-169
WP_001271994.1|110930_112220_+	conjugal transfer protein TraO	NA	NA	NA	NA	NA
110183:111493	attR	AGTCATCCTGTTTACCTCTTTCTCAGGGAGTTTAGTCTCCAGGATTTCCGGGGCGGTTCAATGCGCCCATCACCAGTGTTGTACCCCGTATCAGCTCTCTGACAGTTAATCTGTCCCCCGGTGCCAGCCTTCCTCTTGTTCGCACAGCCATGAACAACCTGAGCGTGGTGACATTTACCGATATCAACGGTTCACCATGGCCACAATCCGATCCTCCTTATAACGCGGCACCAAAACTCTTTGATGTGCAGTACAACGAGAACATGGTGACAATCACACCATTGCGGCCATGGGCATCCGGAAATATTTCTGTCTACCTGAAAGGTCTGTCGGTACCGGTCATCCTGAACGTAACCAGTGGCGAAACAGATACGCCGTCATCCAGTCAGGAAATGGACAGTCGTCTGGATCTGCGAATACCACGGCAGGGACCAACCAGCCCAGTTGTCTCCATCCCGACGGATAAGATCGCCCTGCATGATGCAACATTACAGGCATTTCTGGATGGTATTCCTCCCCGGGACCCTTCAGTTAAGAGGCTGAAATTCACAGGTAATGTCCCGGATACAACGATCTGGCAACACGGCGATGACCTTCTGGTTCGTTCCCAGGCGATGTTGCGCGATGAATTTGAACAGACCTTGTCCTCTGCCGACGGAACTCATCTCTGGAAACTTCCCGTCACCCCACTACTGACTTTCTCTGTGAATGGCCAGTCCGTTCACGTGACACCAGAACTGGAGTAATCATGAGTGCTGAACAGGATGCCGGTAAATCCGGAAAGAAACTGGCTGCCTTGCTTGGACTGGGCAGCATCATCTTATTTGGCGGCGGCTATATCGCGTTTTCCAAACTATCAGGGAGTAACAGCGATATGCAGTCAGCCGTGAACATTAACAGTGCAGCAAGCGGCGGAACGCGCAGCGTTACCGAAACGCCTCACTATCGTGAACTGTTAAGAGCGGATAATGAACGAGGGGCCGCAGCTGCAGCCCGCAATAATCAGACGTTCATTGCCAGTCTTCCACAGGGGCTTGATATTCCGGACACTCCGGAAAAGCAACAACAGCCTGCAGCAAAACCGGAAAACTATGCTCATCGCCAGGCTTCCGGCACACCACAGGAGGATCGAGCAGCCAGTGAAAAACGTATGGAGCGGCTGCAAAAGCTGATTGTAAGAATAAAAGATCAGCATCCTGCCGGTAGTACACCAACCATAGCAACGACTATGTGGAATAAATCTCCGGCAGAAACAACAGGGCAGAATGGTACGCAGCAATTCGCATTACAGAATGCCAGCCTGTCCACGCC	NA	NA	NA	NA
WP_000801920.1|112219_112924_+	IncI1-type conjugal transfer protein TraP	NA	NA	NA	NA	NA
WP_001055569.1|112923_113451_+	conjugal transfer protein TraQ	NA	NA	NA	NA	NA
WP_000633033.1|113813_115244_+|transposase	IS4-like element IS50R family transposase	transposase	Q9JMP3	Wolbachia_phage	27.1	5.9e-36
WP_001277255.1|115512_115701_+	putative conjugal transfer protein TraS	NA	NA	NA	NA	NA
WP_001164788.1|115684_116485_+	IncI1-type conjugal transfer protein TraT	NA	NA	NA	NA	NA
WP_085948178.1|117049_118262_+|transposase	IS3 family transposase	transposase	A0A0N7C1X7	Escherichia_phage	99.7	1.7e-169
>prophage 2
NZ_CP019905	Escherichia coli strain MDR_56 plasmid unnamed6, complete sequence	142304	126964	128654	142304	transposase	Saccharomonospora_phage(50.0%)	2	NA	NA
WP_001175009.1|126964_127369_-|transposase	IS200/IS605 family transposase	transposase	I4AZM1	Saccharomonospora_phage	55.2	6.5e-33
WP_024186316.1|127427_128654_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	O80301	Enterobacteria_phage	99.7	1.0e-193
>prophage 3
NZ_CP019905	Escherichia coli strain MDR_56 plasmid unnamed6, complete sequence	142304	131752	132966	142304	transposase	Escherichia_phage(100.0%)	1	NA	NA
WP_085948178.1|131752_132966_-|transposase	IS3 family transposase	transposase	A0A0N7C1X7	Escherichia_phage	99.7	1.7e-169
