assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002009215.1_ASM200921v1	NZ_CP019061	Mycoplasma capricolum subsp. capripneumoniae strain zly1309F chromosome, complete genome	1	249332-249440	1	CRISPRCasFinder	no			Orphan	AAGGAATTTCTGTGTATTTACACACTTTTTCCTTA	35	0	0	NA	NA	NA	1	1	Orphan		NA|72aa|up_9|NZ_CP019061.1_220925_221141_+,NA|107aa|up_8|NZ_CP019061.1_221292_221613_+,NA|175aa|up_5|NZ_CP019061.1_232668_233193_+,NA|122aa|down_3|NZ_CP019061.1_254351_254717_-,NA|65aa|down_4|NZ_CP019061.1_254899_255094_-,NA|146aa|down_5|NZ_CP019061.1_255295_255733_-,NA|104aa|down_6|NZ_CP019061.1_256030_256342_-,NA|127aa|down_7|NZ_CP019061.1_257021_257402_+,NA|273aa|down_8|NZ_CP019061.1_257364_258183_-,NA|85aa|down_9|NZ_CP019061.1_258257_258512_-	NA|72aa|up_9|NZ_CP019061.1_220925_221141_+	NA	NA|107aa|up_8|NZ_CP019061.1_221292_221613_+	NA	NA|294aa|up_7|NZ_CP019061.1_223498_224380_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|547aa|up_6|NZ_CP019061.1_224413_226054_-	TIGR03490, Uncharacterized_lipoprotein_lpp, mycoides cluster lipoprotein, LppA/P72 family	NA|175aa|up_5|NZ_CP019061.1_232668_233193_+	NA	NA|535aa|up_4|NZ_CP019061.1_241685_243290_+	cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase catalytic domain found in Sucrose isomerases, oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), dextran glucosidase (also called glucan 1,6-alpha-glucosidase), and related proteins	NA|598aa|up_3|NZ_CP019061.1_244062_245856_-	TIGR00181, Oligoendopeptidase_F_homolog, oligoendopeptidase F	NA|228aa|up_2|NZ_CP019061.1_245855_246539_-	cd17495, RMtype1_S_Cep9333ORF4827P-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Crinalium epipsammum S subunit (S	NA|452aa|up_1|NZ_CP019061.1_246555_247911_-	pfam00883, Peptidase_M17, Cytosol aminopeptidase family, catalytic domain	NA|432aa|up_0|NZ_CP019061.1_248026_249322_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|207aa|down_0|NZ_CP019061.1_249564_250185_+	COG2059, ChrA, Chromate transport protein ChrA [Inorganic ion transport and metabolism]	NA|226aa|down_1|NZ_CP019061.1_250184_250862_+	pfam02417, Chromate_transp, Chromate transporter	NA|306aa|down_2|NZ_CP019061.1_253220_254138_-	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|122aa|down_3|NZ_CP019061.1_254351_254717_-	NA	NA|65aa|down_4|NZ_CP019061.1_254899_255094_-	NA	NA|146aa|down_5|NZ_CP019061.1_255295_255733_-	NA	NA|104aa|down_6|NZ_CP019061.1_256030_256342_-	NA	NA|127aa|down_7|NZ_CP019061.1_257021_257402_+	NA	NA|273aa|down_8|NZ_CP019061.1_257364_258183_-	NA	NA|85aa|down_9|NZ_CP019061.1_258257_258512_-	NA
GCF_002009215.1_ASM200921v1	NZ_CP019061	Mycoplasma capricolum subsp. capripneumoniae strain zly1309F chromosome, complete genome	2	358422-358608	1	PILER-CR	no			Orphan	ACCAACCCATTGGTAACTGAGATACTTCAAATGTAACTGATATGCGTTGTAT	52	1	1	358474-358496	NZ_CP019061.1_436751-436773	NA	2	2	Orphan		NA|46aa|up_6|NZ_CP019061.1_352216_352354_+,NA|202aa|up_4|NZ_CP019061.1_353504_354110_+,NA|71aa|up_2|NZ_CP019061.1_355855_356068_+,NA|64aa|up_1|NZ_CP019061.1_357598_357790_+,NA|94aa|up_0|NZ_CP019061.1_357879_358161_+,NA|62aa|down_1|NZ_CP019061.1_359885_360071_+,NA|138aa|down_2|NZ_CP019061.1_361799_362213_+,NA|126aa|down_5|NZ_CP019061.1_366894_367272_+,NA|182aa|down_6|NZ_CP019061.1_367349_367895_+,NA|187aa|down_8|NZ_CP019061.1_368921_369482_+	NA|301aa|up_9|NZ_CP019061.1_346924_347827_-	PRK00098, PRK00098, GTPase RsgA; Reviewed	NA|253aa|up_8|NZ_CP019061.1_348950_349709_-	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms]	NA|151aa|up_7|NZ_CP019061.1_351715_352168_+	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB)	NA|46aa|up_6|NZ_CP019061.1_352216_352354_+	NA	NA|128aa|up_5|NZ_CP019061.1_353042_353426_+	pfam01719, Rep_2, Plasmid replication protein	NA|202aa|up_4|NZ_CP019061.1_353504_354110_+	NA	NA|246aa|up_3|NZ_CP019061.1_355118_355856_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|71aa|up_2|NZ_CP019061.1_355855_356068_+	NA	NA|64aa|up_1|NZ_CP019061.1_357598_357790_+	NA	NA|94aa|up_0|NZ_CP019061.1_357879_358161_+	NA	NA|151aa|down_0|NZ_CP019061.1_359200_359653_+	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|62aa|down_1|NZ_CP019061.1_359885_360071_+	NA	NA|138aa|down_2|NZ_CP019061.1_361799_362213_+	NA	NA|183aa|down_3|NZ_CP019061.1_362780_363329_+	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|157aa|down_4|NZ_CP019061.1_366212_366683_+	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|126aa|down_5|NZ_CP019061.1_366894_367272_+	NA	NA|182aa|down_6|NZ_CP019061.1_367349_367895_+	NA	NA|75aa|down_7|NZ_CP019061.1_368634_368859_+	cd14214, PKc_CLK3, Catalytic domain of the Dual-specificity protein kinase, CDC-like kinase 3	NA|187aa|down_8|NZ_CP019061.1_368921_369482_+	NA	NA|439aa|down_9|NZ_CP019061.1_369603_370920_+	TIGR00665, DnaB, replicative DNA helicase
GCF_002009215.1_ASM200921v1	NZ_CP019061	Mycoplasma capricolum subsp. capripneumoniae strain zly1309F chromosome, complete genome	3	747374-747514	2	CRISPRCasFinder	no			Orphan	GGTTATGGTAGATTAGTGGTAGAAATATGGTAGATTAGAATATAAA	46	0	0	NA	NA	NA	1	1	Orphan		NA|478aa|up_5|NZ_CP019061.1_737403_738837_-,NA|71aa|up_4|NZ_CP019061.1_739038_739251_-,NA|362aa|up_0|NZ_CP019061.1_741522_742608_-,NA|53aa|down_0|NZ_CP019061.1_748572_748731_-,NA|318aa|down_2|NZ_CP019061.1_753195_754149_+	NA|353aa|up_9|NZ_CP019061.1_726701_727760_-	pfam00004, AAA, ATPase family associated with various cellular activities (AAA)	NA|385aa|up_8|NZ_CP019061.1_728958_730113_-	cd17933, DEXSc_RecD-like, DEXS-box helicase domain of RecD and similar proteins	NA|282aa|up_7|NZ_CP019061.1_732691_733537_-	cd00947, TBP_aldolase_IIB, Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases	NA|314aa|up_6|NZ_CP019061.1_736381_737323_+	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases	NA|478aa|up_5|NZ_CP019061.1_737403_738837_-	NA	NA|71aa|up_4|NZ_CP019061.1_739038_739251_-	NA	NA|159aa|up_3|NZ_CP019061.1_739899_740376_-	cd18809, SF1_C_RecD, C-terminal helicase domain of RecD family helicases	NA|101aa|up_2|NZ_CP019061.1_740420_740723_-	cd01744, GATase1_CPSase, Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II	NA|144aa|up_1|NZ_CP019061.1_740892_741324_-	pfam00931, NB-ARC, NB-ARC domain	NA|362aa|up_0|NZ_CP019061.1_741522_742608_-	NA	NA|53aa|down_0|NZ_CP019061.1_748572_748731_-	NA	NA|453aa|down_1|NZ_CP019061.1_749591_750950_+	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|318aa|down_2|NZ_CP019061.1_753195_754149_+	NA	NA|222aa|down_3|NZ_CP019061.1_760215_760881_+	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|112aa|down_4|NZ_CP019061.1_761510_761846_+	TIGR04547, putative_liporotein, MOLPALP family lipoprotein	NA|405aa|down_5|NZ_CP019061.1_761926_763141_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|339aa|down_6|NZ_CP019061.1_763269_764286_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|312aa|down_7|NZ_CP019061.1_764378_765314_-	PRK08939, PRK08939, primosomal protein DnaI; Reviewed	NA|395aa|down_8|NZ_CP019061.1_765323_766508_-	COG3611, DnaB, Replication initiation/membrane attachment protein [DNA replication, recombination, and repair]	NA|275aa|down_9|NZ_CP019061.1_766665_767490_-	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
GCF_002009215.1_ASM200921v1	NZ_CP019061	Mycoplasma capricolum subsp. capripneumoniae strain zly1309F chromosome, complete genome	4	887885-887983	3	CRISPRCasFinder	no			Orphan	TTGAAACATCTCAAGATGATAAAT	24	0	0	NA	NA	NA	1	1	Orphan		NA|200aa|up_4|NZ_CP019061.1_876144_876744_+,NA	NA|437aa|up_9|NZ_CP019061.1_868315_869626_-	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|243aa|up_8|NZ_CP019061.1_872041_872770_+	cd01399, GlcN6P_deaminase, GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium	NA|238aa|up_7|NZ_CP019061.1_872905_873619_+	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|283aa|up_6|NZ_CP019061.1_873611_874460_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|532aa|up_5|NZ_CP019061.1_874450_876046_+	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|200aa|up_4|NZ_CP019061.1_876144_876744_+	NA	NA|334aa|up_3|NZ_CP019061.1_876745_877747_+	pfam08843, AbiEii, Nucleotidyl transferase AbiEii toxin, Type IV TA system	NA|223aa|up_2|NZ_CP019061.1_877811_878480_-	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional	NA|561aa|up_1|NZ_CP019061.1_878491_880174_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|438aa|up_0|NZ_CP019061.1_880338_881652_+	TIGR02644, Thymidine_phosphorylase, pyrimidine-nucleoside phosphorylase	NA|184aa|down_0|NZ_CP019061.1_890640_891192_-	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]	NA|433aa|down_1|NZ_CP019061.1_892504_893803_-	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|267aa|down_2|NZ_CP019061.1_894087_894888_-	cd01310, TatD_DNAse, TatD like proteins;  E	NA|490aa|down_3|NZ_CP019061.1_896794_898264_-	TIGR03752, conj_TIGR03752, integrating conjugative element protein, PFL_4705 family	NA|317aa|down_4|NZ_CP019061.1_898266_899217_-	COG1466, HolA, DNA polymerase III, delta subunit [DNA replication, recombination, and repair]	NA|666aa|down_5|NZ_CP019061.1_899503_901501_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|947aa|down_6|NZ_CP019061.1_901509_904350_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|370aa|down_7|NZ_CP019061.1_904342_905452_+	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism]	NA|225aa|down_8|NZ_CP019061.1_905480_906155_+	TIGR04518, conserved_hypothetical_protein, ECF transporter S component, folate family	NA|311aa|down_9|NZ_CP019061.1_908751_909684_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase
GCF_002009215.1_ASM200921v1	NZ_CP019061	Mycoplasma capricolum subsp. capripneumoniae strain zly1309F chromosome, complete genome	5	979660-979761	4	CRISPRCasFinder	no			Orphan	AATCAAAATATAAATAATTCAAAT	24	0	0	NA	NA	NA	1	1	Orphan		NA|97aa|up_0|NZ_CP019061.1_979036_979327_-,NA|99aa|down_1|NZ_CP019061.1_980672_980969_+,NA|61aa|down_2|NZ_CP019061.1_981543_981726_+,NA|192aa|down_9|NZ_CP019061.1_994820_995396_+	NA|455aa|up_9|NZ_CP019061.1_957855_959220_+	PRK03932, asnC, asparaginyl-tRNA synthetase; Validated	NA|281aa|up_8|NZ_CP019061.1_972013_972856_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|103aa|up_7|NZ_CP019061.1_972867_973176_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|501aa|up_6|NZ_CP019061.1_973288_974791_-	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|325aa|up_5|NZ_CP019061.1_974793_975768_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|105aa|up_4|NZ_CP019061.1_975769_976084_-	pfam08921, DUF1904, Domain of unknown function (DUF1904)	NA|423aa|up_3|NZ_CP019061.1_976189_977458_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|276aa|up_2|NZ_CP019061.1_977538_978366_-	COG2364, COG2364, Predicted membrane protein [Function unknown]	NA|195aa|up_1|NZ_CP019061.1_978433_979018_-	TIGR04522, EcfS_MSC_0063, putative energy coupling factor transporter S component, MSC_0063 family	NA|97aa|up_0|NZ_CP019061.1_979036_979327_-	NA	NA|84aa|down_0|NZ_CP019061.1_980473_980725_+	smart00460, TGc, Transglutaminase/protease-like homologues	NA|99aa|down_1|NZ_CP019061.1_980672_980969_+	NA	NA|61aa|down_2|NZ_CP019061.1_981543_981726_+	NA	NA|581aa|down_3|NZ_CP019061.1_981769_983512_-	TIGR02002, PTS_system_glucose-specific_IIABC_component, PTS system, glucose-specific IIBC component	NA|150aa|down_4|NZ_CP019061.1_983620_984070_+	cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of  thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides	NA|697aa|down_5|NZ_CP019061.1_984218_986309_+	pfam01732, DUF31, Putative peptidase (DUF31)	NA|302aa|down_6|NZ_CP019061.1_987044_987950_+	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|218aa|down_7|NZ_CP019061.1_988501_989155_-	cd09006, PNP_EcPNPI-like, purine nucleoside phosphorylases similar to Escherichia coli PNP-I (DeoD) and Trichomonas vaginalis PNP	NA|301aa|down_8|NZ_CP019061.1_991208_992111_+	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases	NA|192aa|down_9|NZ_CP019061.1_994820_995396_+	NA
