assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002009155.1_ASM200915v1	NZ_CP013720	Salmonella enterica subsp. enterica serovar Typhimurium strain RM10607, complete genome	1	380617-380706	1	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas7,cse2gr11,cas8e,PD-DExK,RT	Orphan	TTGTCCAACGGATGTCCAACGGAT	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas7,cse2gr11,cas8e,PD-DExK,RT,cas14j	NA|63aa|up_9|NZ_CP013720.1_375844_376033_-,NA|113aa|up_4|NZ_CP013720.1_377763_378102_-,NA|66aa|up_3|NZ_CP013720.1_378324_378522_+,NA|70aa|down_2|NZ_CP013720.1_382903_383113_+,NA|61aa|down_3|NZ_CP013720.1_383190_383373_+,NA|99aa|down_4|NZ_CP013720.1_383375_383672_+	NA|63aa|up_9|NZ_CP013720.1_375844_376033_-	NA	NA|54aa|up_8|NZ_CP013720.1_376135_376297_-	pfam02061, Lambda_CIII, Lambda Phage CIII	NA|105aa|up_7|NZ_CP013720.1_376366_376681_-	PHA01516, PHA01516, hypothetical protein	NA|185aa|up_6|NZ_CP013720.1_376852_377407_-	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|65aa|up_5|NZ_CP013720.1_377490_377685_-	pfam11058, Ral, Antirestriction protein Ral	NA|113aa|up_4|NZ_CP013720.1_377763_378102_-	NA	NA|66aa|up_3|NZ_CP013720.1_378324_378522_+	NA	NA|221aa|up_2|NZ_CP013720.1_378659_379322_-	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]	NA|72aa|up_1|NZ_CP013720.1_379440_379656_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|94aa|up_0|NZ_CP013720.1_379766_380048_+	pfam05269, Phage_CII, Bacteriophage CII protein	NA|479aa|down_0|NZ_CP013720.1_381110_382547_+	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily	NA|91aa|down_1|NZ_CP013720.1_382621_382894_+	pfam15944, DUF4752, Domain of unknown function (DUF4752)	NA|70aa|down_2|NZ_CP013720.1_382903_383113_+	NA	NA|61aa|down_3|NZ_CP013720.1_383190_383373_+	NA	NA|99aa|down_4|NZ_CP013720.1_383375_383672_+	NA	NA|149aa|down_5|NZ_CP013720.1_383628_384075_+	pfam05772, NinB, NinB protein	NA|58aa|down_6|NZ_CP013720.1_384071_384245_+	pfam17466, NinD, Family of unknown function	NA|59aa|down_7|NZ_CP013720.1_384211_384388_+	pfam05322, NinE, NINE Protein	NA|114aa|down_8|NZ_CP013720.1_384390_384732_+	PHA01519, PHA01519, hypothetical protein	NA|58aa|down_9|NZ_CP013720.1_384724_384898_+	pfam05810, NinF, NinF protein
GCF_002009155.1_ASM200915v1	NZ_CP013720	Salmonella enterica subsp. enterica serovar Typhimurium strain RM10607, complete genome	2	2919884-2919993	2	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas7,cse2gr11,cas8e,PD-DExK,RT	Orphan	TTAAAAAAAGGTGGTACAGGGTGGGACA	28	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas7,cse2gr11,cas8e,PD-DExK,RT,cas14j	NA|81aa|up_9|NZ_CP013720.1_2907922_2908165_-,NA|198aa|up_3|NZ_CP013720.1_2913754_2914348_+,NA	NA|81aa|up_9|NZ_CP013720.1_2907922_2908165_-	NA	NA|210aa|up_8|NZ_CP013720.1_2908288_2908918_+	pfam16452, Phage_CI_C, Bacteriophage CI repressor C-terminal domain	NA|339aa|up_7|NZ_CP013720.1_2908921_2909938_+	PHA02601, int, integrase; Provisional	NA|578aa|up_6|NZ_CP013720.1_2910322_2912056_-	cd01286, deoxycytidylate_deaminase, Deoxycytidylate deaminase domain	NA|355aa|up_5|NZ_CP013720.1_2912462_2913527_+	PRK09692, PRK09692, integrase; Provisional	NA|56aa|up_4|NZ_CP013720.1_2913540_2913708_+	PRK09692, PRK09692, integrase; Provisional	NA|198aa|up_3|NZ_CP013720.1_2913754_2914348_+	NA	NA|398aa|up_2|NZ_CP013720.1_2914737_2915931_+	pfam02810, SEC-C, SEC-C motif	NA|72aa|up_1|NZ_CP013720.1_2917545_2917761_+	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|690aa|up_0|NZ_CP013720.1_2917796_2919866_+	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair]	NA|428aa|down_0|NZ_CP013720.1_2920368_2921652_+	COG3950, COG3950, Predicted ATP-binding protein involved in virulence [General function prediction only]	NA|273aa|down_1|NZ_CP013720.1_2921696_2922515_+	pfam14491, DUF4435, Protein of unknown function (DUF4435)	NA|119aa|down_2|NZ_CP013720.1_2922667_2923024_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|95aa|down_3|NZ_CP013720.1_2923118_2923403_+	COG3423, Nlp, Predicted transcriptional regulator [Transcription]	NA|174aa|down_4|NZ_CP013720.1_2923515_2924037_+	COG3730, SrlA, Phosphotransferase system sorbitol-specific component IIC [Carbohydrate transport and metabolism]	NA|125aa|down_5|NZ_CP013720.1_2924033_2924408_+	COG3731, SrlB, Phosphotransferase system sorbitol-specific component IIA [Carbohydrate transport and metabolism]	NA|327aa|down_6|NZ_CP013720.1_2924404_2925385_+	COG3732, SrlE, Phosphotransferase system sorbitol-specific component IIBC [Carbohydrate transport and metabolism]	NA|338aa|down_7|NZ_CP013720.1_2925395_2926409_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|401aa|down_8|NZ_CP013720.1_2926703_2927906_+	pfam13020, DUF3883, Domain of unknown function (DUF3883)	NA|212aa|down_9|NZ_CP013720.1_2927979_2928615_-	TIGR03128, RuMP_HxlA, 3-hexulose-6-phosphate synthase
GCF_002009155.1_ASM200915v1	NZ_CP013720	Salmonella enterica subsp. enterica serovar Typhimurium strain RM10607, complete genome	3	3110758-3112172	3,1,1,2,2,4	CRISPRCasFinder,CRT,PILER-CR,PILER-CR,CRT,CRISPRCasFinder	no	cas2,cas1,cas6e,cas7,cse2gr11,cas8e,cas3	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas7,cse2gr11,cas8e,PD-DExK,RT	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACACT,GGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,30,28,29,29	0	0	NA	NA	I-E:I-E:I-E:I-E:I-E:I-E	21,22,20,20,22,21	22	TypeI-E	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas7,cse2gr11,cas8e,PD-DExK,RT,cas14j	NA,NA|75aa|down_7|NZ_CP013720.1_3120832_3121057_+	NA|254aa|up_9|NZ_CP013720.1_3102624_3103386_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP013720.1_3103366_3104416_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP013720.1_3104412_3104892_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP013720.1_3104891_3105602_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP013720.1_3105620_3105932_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|119aa|up_4|NZ_CP013720.1_3106122_3106479_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP013720.1_3106496_3107102_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_2|NZ_CP013720.1_3107088_3108528_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP013720.1_3108537_3109446_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|349aa|up_0|NZ_CP013720.1_3109696_3110743_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP013720.1_3112268_3112562_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP013720.1_3112561_3113482_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP013720.1_3113478_3114129_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas7|353aa|down_3|NZ_CP013720.1_3114867_3115926_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|187aa|down_4|NZ_CP013720.1_3115939_3116500_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|519aa|down_5|NZ_CP013720.1_3116496_3118053_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|down_6|NZ_CP013720.1_3118064_3120728_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|75aa|down_7|NZ_CP013720.1_3120832_3121057_+	NA	NA|318aa|down_8|NZ_CP013720.1_3121172_3122126_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|down_9|NZ_CP013720.1_3122213_3122948_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_002009155.1_ASM200915v1	NZ_CP013720	Salmonella enterica subsp. enterica serovar Typhimurium strain RM10607, complete genome	4	3128304-3130469	5,3,3,4	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas2,cas1,cas6e,cas7,cse2gr11,cas8e,cas3	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas7,cse2gr11,cas8e,PD-DExK,RT	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,NNCGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACA,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,31,28,29	0	0	NA	NA	I-E:I-E:I-E:I-E	35,35,31,31	35	TypeI-E	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas7,cse2gr11,cas8e,PD-DExK,RT,cas14j	NA|75aa|up_7|NZ_CP013720.1_3120832_3121057_+,NA|57aa|up_2|NZ_CP013720.1_3126859_3127030_-,NA	cas8e|519aa|up_9|NZ_CP013720.1_3116496_3118053_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|up_8|NZ_CP013720.1_3118064_3120728_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|75aa|up_7|NZ_CP013720.1_3120832_3121057_+	NA	NA|318aa|up_6|NZ_CP013720.1_3121172_3122126_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|up_5|NZ_CP013720.1_3122213_3122948_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_4|NZ_CP013720.1_3123023_3124736_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_3|NZ_CP013720.1_3124735_3126535_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|57aa|up_2|NZ_CP013720.1_3126859_3127030_-	NA	NA|121aa|up_1|NZ_CP013720.1_3126958_3127321_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|266aa|up_0|NZ_CP013720.1_3127408_3128206_-	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|224aa|down_0|NZ_CP013720.1_3130765_3131437_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|433aa|down_1|NZ_CP013720.1_3131572_3132871_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_2|NZ_CP013720.1_3132953_3134591_-	PRK05380, pyrG, CTP synthetase; Validated	NA|267aa|down_3|NZ_CP013720.1_3134818_3135619_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|99aa|down_4|NZ_CP013720.1_3136387_3136684_-	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|119aa|down_5|NZ_CP013720.1_3136649_3137006_-	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|745aa|down_6|NZ_CP013720.1_3137089_3139324_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|432aa|down_7|NZ_CP013720.1_3139375_3140671_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|381aa|down_8|NZ_CP013720.1_3143529_3144672_-	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]	NA|447aa|down_9|NZ_CP013720.1_3144749_3146090_-	TIGR03247, glucar-dehydr, glucarate dehydratase
