assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002007705.1_ASM200770v1	NZ_CP019778	Escherichia coli strain NCTC86 chromosome, complete genome	1	459354-459498	1	CRISPRCasFinder	no		DEDDh,RT,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	Orphan	ATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	NA|28aa|up_2|NZ_CP019778.1_457224_457308_+,NA	NA|372aa|up_9|NZ_CP019778.1_451980_453096_+	PRK10245, adrA, diguanylate cyclase AdrA; Provisional	NA|270aa|up_8|NZ_CP019778.1_453112_453922_-	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|153aa|up_7|NZ_CP019778.1_454041_454500_+	PRK00124, PRK00124, YaiI/YqxD family protein	NA|175aa|up_6|NZ_CP019778.1_454682_455207_+	PRK03731, aroL, shikimate kinase AroL	NA|64aa|up_5|NZ_CP019778.1_455256_455448_+	PRK10380, PRK10380, hypothetical protein; Provisional	NA|226aa|up_4|NZ_CP019778.1_455705_456383_+	PRK10481, PRK10481, hypothetical protein; Provisional	NA|95aa|up_3|NZ_CP019778.1_456454_456739_+	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|28aa|up_2|NZ_CP019778.1_457224_457308_+	NA	NA|304aa|up_1|NZ_CP019778.1_457385_458297_-	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|303aa|up_0|NZ_CP019778.1_458421_459330_+	PRK09557, PRK09557, fructokinase; Reviewed	NA|395aa|down_0|NZ_CP019778.1_459574_460759_-	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|1049aa|down_1|NZ_CP019778.1_460884_464031_-	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|401aa|down_2|NZ_CP019778.1_464027_465230_-	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|230aa|down_3|NZ_CP019778.1_465419_466109_+	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|432aa|down_4|NZ_CP019778.1_466166_467462_+	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|440aa|down_5|NZ_CP019778.1_467868_469188_+	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|458aa|down_6|NZ_CP019778.1_469263_470637_+	PRK10580, proY, putative proline-specific permease; Provisional	NA|606aa|down_7|NZ_CP019778.1_470792_472610_+	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|194aa|down_8|NZ_CP019778.1_472614_473196_-	PRK10045, PRK10045, ACP phosphodiesterase	NA|357aa|down_9|NZ_CP019778.1_473288_474359_+	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
GCF_002007705.1_ASM200770v1	NZ_CP019778	Escherichia coli strain NCTC86 chromosome, complete genome	2	1306152-1306287	2	CRISPRCasFinder	no		DEDDh,RT,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	Orphan	TCTGCAACCTGGAGGAAAATGACAATGCCAGATACACG	38	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	NA|58aa|up_1|NZ_CP019778.1_1304990_1305164_+,NA|169aa|up_0|NZ_CP019778.1_1305361_1305868_+,NA|61aa|down_2|NZ_CP019778.1_1309517_1309700_-	NA|303aa|up_9|NZ_CP019778.1_1295623_1296532_+	PRK09956, PRK09956, ISNCY family transposase	NA|76aa|up_8|NZ_CP019778.1_1296816_1297044_-	pfam04703, FaeA, FaeA-like protein	NA|266aa|up_7|NZ_CP019778.1_1297277_1298075_-	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|391aa|up_6|NZ_CP019778.1_1298074_1299247_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|102aa|up_5|NZ_CP019778.1_1300097_1300403_+	pfam03333, PapB, Adhesin biosynthesis transcription regulatory protein	NA|266aa|up_4|NZ_CP019778.1_1300740_1301538_+	PRK15224, PRK15224, pili assembly chaperone PapD	NA|861aa|up_3|NZ_CP019778.1_1301577_1304160_+	PRK15223, PRK15223, fimbrial biogenesis outer membrane usher protein	NA|148aa|up_2|NZ_CP019778.1_1304175_1304619_+	cd18776, AfaD-like, AfaD and similar proteins	NA|58aa|up_1|NZ_CP019778.1_1304990_1305164_+	NA	NA|169aa|up_0|NZ_CP019778.1_1305361_1305868_+	NA	NA|127aa|down_0|NZ_CP019778.1_1306596_1306977_+	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|142aa|down_1|NZ_CP019778.1_1308792_1309218_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|61aa|down_2|NZ_CP019778.1_1309517_1309700_-	NA	NA|291aa|down_3|NZ_CP019778.1_1310030_1310903_+	COG3596, COG3596, Predicted GTPase [General function prediction only]	NA|795aa|down_4|NZ_CP019778.1_1311120_1313505_+	PRK09866, PRK09866, clamp-binding protein CrfC	NA|302aa|down_5|NZ_CP019778.1_1313501_1314407_+	pfam13990, YjcZ, YjcZ-like protein	NA|357aa|down_6|NZ_CP019778.1_1314403_1315474_+	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|273aa|down_7|NZ_CP019778.1_1315813_1316632_+	pfam06067, DUF932, Domain of unknown function (DUF932)	NA|162aa|down_8|NZ_CP019778.1_1316722_1317208_+	pfam03230, Antirestrict, Antirestriction protein	NA|159aa|down_9|NZ_CP019778.1_1317223_1317700_+	COG2003, RadC, DNA repair proteins [DNA replication, recombination, and repair]
GCF_002007705.1_ASM200770v1	NZ_CP019778	Escherichia coli strain NCTC86 chromosome, complete genome	3	2636863-2636989	3	CRISPRCasFinder	no		DEDDh,RT,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	Orphan	TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC	39	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	NA,NA	NA|441aa|up_9|NZ_CP019778.1_2614416_2615739_+	pfam02667, SCFA_trans, Short chain fatty acid transporter	NA|259aa|up_8|NZ_CP019778.1_2617028_2617805_-	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|up_7|NZ_CP019778.1_2617809_2619459_-	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|1505aa|up_6|NZ_CP019778.1_2619459_2623974_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|208aa|up_5|NZ_CP019778.1_2623997_2624621_-	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|563aa|up_4|NZ_CP019778.1_2624617_2626306_-	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|876aa|up_3|NZ_CP019778.1_2626454_2629082_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|241aa|up_2|NZ_CP019778.1_2629228_2629951_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|1251aa|up_1|NZ_CP019778.1_2630078_2633831_-	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|762aa|up_0|NZ_CP019778.1_2634526_2636812_+	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|377aa|down_0|NZ_CP019778.1_2637045_2638176_+	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|85aa|down_1|NZ_CP019778.1_2638175_2638430_+	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|217aa|down_2|NZ_CP019778.1_2638483_2639134_-	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|359aa|down_3|NZ_CP019778.1_2639596_2640673_-	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|453aa|down_4|NZ_CP019778.1_2640677_2642036_-	PRK11273, glpT, glycerol-3-phosphate transporter	NA|543aa|down_5|NZ_CP019778.1_2642308_2643937_+	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|420aa|down_6|NZ_CP019778.1_2643926_2645186_+	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_7|NZ_CP019778.1_2645182_2646373_+	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|300aa|down_8|NZ_CP019778.1_2646565_2647465_+	PRK09956, PRK09956, ISNCY family transposase	NA|62aa|down_9|NZ_CP019778.1_2647477_2647663_+	PRK09956, PRK09956, ISNCY family transposase
GCF_002007705.1_ASM200770v1	NZ_CP019778	Escherichia coli strain NCTC86 chromosome, complete genome	4	3128301-3129002	4,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,RT,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	11,11,8	11	TypeI-E	DEDDh,RT,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	NA,NA	NA|254aa|up_9|NZ_CP019778.1_3120112_3120874_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP019778.1_3120854_3121904_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP019778.1_3121900_3122380_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP019778.1_3122379_3123090_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP019778.1_3123108_3123420_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP019778.1_3123613_3123937_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP019778.1_3123986_3124592_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP019778.1_3124591_3126019_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP019778.1_3126020_3126929_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP019778.1_3127180_3128218_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|95aa|down_0|NZ_CP019778.1_3129107_3129392_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|306aa|down_1|NZ_CP019778.1_3129393_3130311_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|200aa|down_2|NZ_CP019778.1_3130326_3130926_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|225aa|down_3|NZ_CP019778.1_3130912_3131587_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|364aa|down_4|NZ_CP019778.1_3131589_3132681_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|161aa|down_5|NZ_CP019778.1_3132693_3133176_-	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|503aa|down_6|NZ_CP019778.1_3133168_3134677_-	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cas3|889aa|down_7|NZ_CP019778.1_3135091_3137758_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|245aa|down_8|NZ_CP019778.1_3138116_3138851_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_9|NZ_CP019778.1_3138925_3140638_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit
GCF_002007705.1_ASM200770v1	NZ_CP019778	Escherichia coli strain NCTC86 chromosome, complete genome	5	3154491-3154824	5,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	DEDDh,RT,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	5,5,4	5	Unclear	DEDDh,RT,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	NA,NA|47aa|down_1|NZ_CP019778.1_3155973_3156114_+	NA|424aa|up_9|NZ_CP019778.1_3143195_3144467_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP019778.1_3144457_3144718_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP019778.1_3144734_3145310_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NZ_CP019778.1_3145457_3146318_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP019778.1_3146314_3147094_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NZ_CP019778.1_3147071_3148481_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP019778.1_3148502_3149957_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP019778.1_3150026_3150812_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP019778.1_3151130_3152408_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP019778.1_3152434_3153913_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP019778.1_3155163_3155835_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP019778.1_3155973_3156114_+	NA	NA|291aa|down_2|NZ_CP019778.1_3156127_3157000_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NZ_CP019778.1_3157059_3158358_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NZ_CP019778.1_3158445_3160083_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NZ_CP019778.1_3160310_3161102_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NZ_CP019778.1_3161172_3161508_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NZ_CP019778.1_3161507_3161756_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NZ_CP019778.1_3161833_3164068_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NZ_CP019778.1_3164115_3165417_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
GCF_002007705.1_ASM200770v1	NZ_CP019778	Escherichia coli strain NCTC86 chromosome, complete genome	6	4924535-4924668	6	CRISPRCasFinder	no		DEDDh,RT,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	Orphan	TACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	38	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	NA|528aa|up_6|NZ_CP019778.1_4915736_4917320_+,NA	NA|238aa|up_9|NZ_CP019778.1_4913639_4914353_-	PRK12742, PRK12742, SDR family oxidoreductase	NA|198aa|up_8|NZ_CP019778.1_4914423_4915017_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|151aa|up_7|NZ_CP019778.1_4915161_4915614_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|528aa|up_6|NZ_CP019778.1_4915736_4917320_+	NA	NA|335aa|up_5|NZ_CP019778.1_4917476_4918481_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NZ_CP019778.1_4918642_4919059_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|NZ_CP019778.1_4919104_4919608_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|399aa|up_2|NZ_CP019778.1_4919800_4920997_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NZ_CP019778.1_4921052_4923908_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NZ_CP019778.1_4923907_4924351_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_CP019778.1_4924704_4926216_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_CP019778.1_4926482_4927583_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_CP019778.1_4927582_4928665_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NZ_CP019778.1_4928783_4930286_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|333aa|down_4|NZ_CP019778.1_4930363_4931362_-	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|440aa|down_5|NZ_CP019778.1_4931428_4932748_-	TIGR00791, Gluconate_permease, gluconate transporter	NA|255aa|down_6|NZ_CP019778.1_4932812_4933577_-	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|344aa|down_7|NZ_CP019778.1_4933600_4934632_-	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|188aa|down_8|NZ_CP019778.1_4934848_4935412_+	PRK09825, idnK, gluconokinase	NA|340aa|down_9|NZ_CP019778.1_4935415_4936435_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)
