assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002007625.1_ASM200762v1	NZ_CP019208	Enterococcus faecium strain 2014-VREF-41 chromosome, complete genome	1	2707303-2707412	1	CRISPRCasFinder	no		cas14j,c2c10_CAS-V-U3,cas3,csa3,DinG,RT,DEDDh,cas2	Orphan	TGATGAACAATACTGGTTGAGCAAAG	26	0	0	NA	NA	NA	1	1	Orphan	cas14j,c2c10_CAS-V-U3,cas3,csa3,DinG,RT,DEDDh,cas2	NA,NA	NA|215aa|up_9|NZ_CP019208.1_2699918_2700563_-	cd02205, CBS_pair_SF, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily	NA|51aa|up_8|NZ_CP019208.1_2700724_2700877_+	PRK00504, rpmG, 50S ribosomal protein L33; Validated	NA|57aa|up_7|NZ_CP019208.1_2700900_2701071_+	pfam00584, SecE, SecE/Sec61-gamma subunits of protein translocation complex	NA|182aa|up_6|NZ_CP019208.1_2701171_2701717_+	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|302aa|up_5|NZ_CP019208.1_2701775_2702681_+	pfam06028, DUF915, Alpha/beta hydrolase of unknown function (DUF915)	NA|340aa|up_4|NZ_CP019208.1_2702853_2703873_+	cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN-binding domain	NA|291aa|up_3|NZ_CP019208.1_2703963_2704836_-	TIGR00718, Probable_L-serine_dehydratase_alpha_chain, L-serine dehydratase, iron-sulfur-dependent, alpha subunit	NA|223aa|up_2|NZ_CP019208.1_2704848_2705517_-	COG1760, SdaA, L-serine deaminase [Amino acid transport and metabolism]	NA|141aa|up_1|NZ_CP019208.1_2705859_2706282_+	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|230aa|up_0|NZ_CP019208.1_2706385_2707075_+	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|168aa|down_0|NZ_CP019208.1_2707484_2707988_+	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed	NA|123aa|down_1|NZ_CP019208.1_2708040_2708409_+	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed	NA|230aa|down_2|NZ_CP019208.1_2708514_2709204_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|401aa|down_3|NZ_CP019208.1_2709285_2710488_+	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|511aa|down_4|NZ_CP019208.1_2710678_2712211_-	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|234aa|down_5|NZ_CP019208.1_2712444_2713146_+	cd01399, GlcN6P_deaminase, GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium	NA|238aa|down_6|NZ_CP019208.1_2713399_2714113_+	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|380aa|down_7|NZ_CP019208.1_2714421_2715561_+	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|322aa|down_8|NZ_CP019208.1_2715649_2716615_-	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|720aa|down_9|NZ_CP019208.1_2716664_2718824_-	PRK07306, PRK07306, ribonucleotide-diphosphate reductase subunit alpha; Validated
GCF_002007625.1_ASM200762v1	NZ_CP019209	Enterococcus faecium strain 2014-VREF-41 plasmid p41-1, complete sequence	1	36514-36624	1	CRISPRCasFinder	no		cas14j,DEDDh	Orphan	ACAACTCATCAGTCCTTATTGACAAAGAGCC	31	1	11	36545-36593|36545-36593|36545-36593|36545-36593|36545-36593|36545-36593|36545-36593|36545-36593|36545-36593|36545-36593|36545-36593	NZ_CP019208.1_382118-382070|NZ_CP019208.1_825387-825339|NZ_CP019208.1_953549-953597|NZ_CP019208.1_1160884-1160932|NZ_CP019208.1_1271260-1271308|NZ_CP019208.1_1320396-1320444|NZ_CP019208.1_1331569-1331521|NZ_CP019208.1_1354383-1354431|NZ_CP019208.1_1795192-1795240|NZ_CP019208.1_2944280-2944232|NZ_CP019209.1_9125-9173	NA	1	1	Orphan	cas14j,c2c10_CAS-V-U3,cas3,csa3,DinG,RT,DEDDh,cas2	NA,NA	NA|554aa|up_9|NZ_CP019209.1_20151_21813_-	pfam07555, NAGidase, beta-N-acetylglucosaminidase	NA|994aa|up_8|NZ_CP019209.1_21809_24791_-	PRK10340, ebgA, cryptic beta-D-galactosidase subunit alpha; Reviewed	NA|638aa|up_7|NZ_CP019209.1_24918_26832_-	cd06565, GH20_GcnA-like, Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins	NA|204aa|up_6|NZ_CP019209.1_26861_27473_-	COG5578, COG5578, Predicted integral membrane protein [Function unknown]	NA|491aa|up_5|NZ_CP019209.1_27523_28996_-	pfam12010, DUF3502, Domain of unknown function (DUF3502)	NA|304aa|up_4|NZ_CP019209.1_29019_29931_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|313aa|up_3|NZ_CP019209.1_29942_30881_-	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]	NA|525aa|up_2|NZ_CP019209.1_31109_32684_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|243aa|up_1|NZ_CP019209.1_32661_33390_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|425aa|up_0|NZ_CP019209.1_33772_35047_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|110aa|down_0|NZ_CP019209.1_36640_36970_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_1|NZ_CP019209.1_36959_37232_-	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family	NA|268aa|down_2|NZ_CP019209.1_37682_38486_-	cd07402, MPP_GpdQ, Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain	NA|375aa|down_3|NZ_CP019209.1_38463_39588_-	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]	NA|272aa|down_4|NZ_CP019209.1_39603_40419_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|297aa|down_5|NZ_CP019209.1_40408_41299_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|430aa|down_6|NZ_CP019209.1_41365_42655_-	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|493aa|down_7|NZ_CP019209.1_44003_45482_-	pfam13751, DDE_Tnp_1_6, Transposase DDE domain	NA|400aa|down_8|NZ_CP019209.1_45471_46671_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|459aa|down_9|NZ_CP019209.1_46800_48177_-	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]
GCF_002007625.1_ASM200762v1	NZ_CP019209	Enterococcus faecium strain 2014-VREF-41 plasmid p41-1, complete sequence	2	71246-71373	2	CRISPRCasFinder	no	cas14j	cas14j,DEDDh	Unclear	TCAGAGGGTATGAAAATCATACC	23	0	0	NA	NA	NA	2	2	TypeV	cas14j,c2c10_CAS-V-U3,cas3,csa3,DinG,RT,DEDDh,cas2	NA|312aa|up_5|NZ_CP019209.1_64569_65505_-,NA|65aa|up_0|NZ_CP019209.1_69270_69465_-,NA|111aa|down_0|NZ_CP019209.1_72680_73013_+,NA|791aa|down_3|NZ_CP019209.1_75869_78242_+,NA|50aa|down_6|NZ_CP019209.1_81993_82143_+	NA|88aa|up_9|NZ_CP019209.1_57699_57963_-	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	NA|392aa|up_8|NZ_CP019209.1_59107_60283_-	cd17473, MFS_arabinose_efflux_permease_like, Putative arabinose efflux permease family transporters of the Major Facilitator Superfamily	NA|750aa|up_7|NZ_CP019209.1_60285_62535_-	COG3345, GalA, Alpha-galactosidase [Carbohydrate transport and metabolism]	NA|285aa|up_6|NZ_CP019209.1_62631_63486_-	cd06986, cupin_MmsR-like_N, AraC/XylS family transcriptional regulators similar to MmsR, N-terminal cupin domain	NA|312aa|up_5|NZ_CP019209.1_64569_65505_-	NA	NA|106aa|up_4|NZ_CP019209.1_66063_66381_-	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE	NA|85aa|up_3|NZ_CP019209.1_66381_66636_-	TIGR02609, hypothetical_protein_XAC1195, putative addiction module antidote	NA|135aa|up_2|NZ_CP019209.1_66994_67399_+	pfam01797, Y1_Tnp, Transposase IS200 like	cas14j|383aa|up_1|NZ_CP019209.1_67415_68564_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|65aa|up_0|NZ_CP019209.1_69270_69465_-	NA	NA|111aa|down_0|NZ_CP019209.1_72680_73013_+	NA	NA|114aa|down_1|NZ_CP019209.1_73631_73973_+	pfam17400, DUF5406, Family of unknown function (DUF5406)	NA|417aa|down_2|NZ_CP019209.1_74209_75460_-	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|791aa|down_3|NZ_CP019209.1_75869_78242_+	NA	NA|487aa|down_4|NZ_CP019209.1_78302_79763_+	pfam13155, Toprim_2, Toprim-like	NA|735aa|down_5|NZ_CP019209.1_79773_81978_+	PRK07726, PRK07726, DNA topoisomerase 3	NA|50aa|down_6|NZ_CP019209.1_81993_82143_+	NA	NA|198aa|down_7|NZ_CP019209.1_82218_82812_+	pfam13338, AbiEi_4, Transcriptional regulator, AbiEi antitoxin	NA|300aa|down_8|NZ_CP019209.1_82824_83724_+	pfam08843, AbiEii, Nucleotidyl transferase AbiEii toxin, Type IV TA system	NA|162aa|down_9|NZ_CP019209.1_83726_84212_+	PRK07275, PRK07275, single-stranded DNA-binding protein; Provisional
