assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002002905.1_ASM200290v1	NZ_CP019509	Aquaspirillum sp. LM1 chromosome, complete genome	1	621167-621253	1	CRISPRCasFinder	no	c2c9_V-U4	csa3,c2c9_V-U4,WYL,cas14j,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas3-cas2,cas8f,cas5f,cas7f,cas6f,PD-DExK,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,DinG	Type V-U4	GTCGTTCCCGCGCAGGCGGGAACCCAG	27	1	1	621194-621226	NZ_CP019509.1_140453-140485	NA	1	1	TypeV-U4	csa3,c2c9_V-U4,WYL,cas14j,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas3-cas2,cas8f,cas5f,cas7f,cas6f,PD-DExK,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,DinG	NA,NA	NA|495aa|up_9|NZ_CP019509.1_606423_607908_+	pfam01235, Na_Ala_symp, Sodium:alanine symporter family	NA|449aa|up_8|NZ_CP019509.1_607962_609309_-	PRK10604, PRK10604, sensor protein RstB; Provisional	NA|241aa|up_7|NZ_CP019509.1_609308_610031_-	PRK10701, PRK10701, DNA-binding transcriptional regulator RstA; Provisional	NA|409aa|up_6|NZ_CP019509.1_610236_611463_+	PRK06635, PRK06635, aspartate kinase; Reviewed	NA|552aa|up_5|NZ_CP019509.1_612033_613689_-	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|457aa|up_4|NZ_CP019509.1_614025_615396_+	COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism]	NA|446aa|up_3|NZ_CP019509.1_615602_616940_-	COG4097, COG4097, Predicted ferric reductase [Inorganic ion transport and metabolism]	NA|146aa|up_2|NZ_CP019509.1_617155_617593_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|539aa|up_1|NZ_CP019509.1_617840_619457_+	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|533aa|up_0|NZ_CP019509.1_619477_621076_+	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|169aa|down_0|NZ_CP019509.1_622358_622865_-	cd07177, terB_like, tellurium resistance terB-like protein	NA|640aa|down_1|NZ_CP019509.1_623171_625091_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|252aa|down_2|NZ_CP019509.1_625152_625908_-	pfam13386, DsbD_2, Cytochrome C biogenesis protein transmembrane region	NA|334aa|down_3|NZ_CP019509.1_625897_626899_-	COG0348, NapH, Polyferredoxin [Energy production and conversion]	NA|408aa|down_4|NZ_CP019509.1_627183_628407_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|279aa|down_5|NZ_CP019509.1_628506_629343_-	pfam10670, DUF4198, Domain of unknown function (DUF4198)	NA|285aa|down_6|NZ_CP019509.1_629526_630381_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|385aa|down_7|NZ_CP019509.1_630382_631537_-	COG4206, BtuB, Outer membrane cobalamin receptor protein [Coenzyme metabolism]	NA|516aa|down_8|NZ_CP019509.1_631604_633152_-	pfam03929, PepSY_TM, PepSY-associated TM region	NA|116aa|down_9|NZ_CP019509.1_633342_633690_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel
GCF_002002905.1_ASM200290v1	NZ_CP019509	Aquaspirillum sp. LM1 chromosome, complete genome	2	997570-999308	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	csa3,c2c9_V-U4,WYL,cas14j,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas3-cas2,cas8f,cas5f,cas7f,cas6f,PD-DExK,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,DinG	Type I-E	GTGTTCCCCGCGTCAGCGGGGATGAACCG,GTGTTCCCCGCGTCAGCGGGGATGAACCG,GTGTTCCCCGCGTCAGCGGGGATGAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	28,28,28	28	TypeI-E	csa3,c2c9_V-U4,WYL,cas14j,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas3-cas2,cas8f,cas5f,cas7f,cas6f,PD-DExK,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,DinG	NA,NA	NA|325aa|up_9|NZ_CP019509.1_986130_987105_+	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]	NA|193aa|up_8|NZ_CP019509.1_988033_988612_+	pfam04955, HupE_UreJ, HupE / UreJ protein	cas3|867aa|up_7|NZ_CP019509.1_989042_991643_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|515aa|up_6|NZ_CP019509.1_991769_993314_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|171aa|up_5|NZ_CP019509.1_993306_993819_+	PRK13921, PRK13921, CRISPR-associated Cse2 family protein; Provisional	cas7|379aa|up_4|NZ_CP019509.1_993852_994989_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|223aa|up_3|NZ_CP019509.1_994990_995659_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|206aa|up_2|NZ_CP019509.1_995633_996251_+	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas1|308aa|up_1|NZ_CP019509.1_996250_997174_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|99aa|up_0|NZ_CP019509.1_997154_997451_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|170aa|down_0|NZ_CP019509.1_999343_999853_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|177aa|down_1|NZ_CP019509.1_999870_1000401_-	pfam13592, HTH_33, Winged helix-turn helix	NA|127aa|down_2|NZ_CP019509.1_1001819_1002200_-	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional	NA|245aa|down_3|NZ_CP019509.1_1002196_1002931_-	PRK05265, PRK05265, pyridoxine 5'-phosphate synthase; Provisional	NA|241aa|down_4|NZ_CP019509.1_1002996_1003719_-	PRK00085, recO, DNA repair protein RecO; Reviewed	NA|298aa|down_5|NZ_CP019509.1_1003732_1004626_-	PRK00089, era, GTPase Era; Reviewed	NA|235aa|down_6|NZ_CP019509.1_1004775_1005480_-	PRK00102, rnc, ribonuclease III; Reviewed	NA|323aa|down_7|NZ_CP019509.1_1005625_1006594_-	PRK10861, PRK10861, signal peptidase I	NA|598aa|down_8|NZ_CP019509.1_1006667_1008461_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|80aa|down_9|NZ_CP019509.1_1008596_1008836_-	pfam05768, DUF836, Glutaredoxin-like domain (DUF836)
GCF_002002905.1_ASM200290v1	NZ_CP019509	Aquaspirillum sp. LM1 chromosome, complete genome	3	1000465-1001594	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	csa3,c2c9_V-U4,WYL,cas14j,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas3-cas2,cas8f,cas5f,cas7f,cas6f,PD-DExK,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,DinG	Type I-E	GTGTTCCCCGCGTCAGCGGGGATGAACCG,GTGTTCCCCGCGTCAGCGGGGATGAACCG,GTGTTCCCCGCGTCAGCGGGGATGAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	18,18,18	18	TypeI-E	csa3,c2c9_V-U4,WYL,cas14j,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas3-cas2,cas8f,cas5f,cas7f,cas6f,PD-DExK,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,DinG	NA,NA	cas3|867aa|up_9|NZ_CP019509.1_989042_991643_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|515aa|up_8|NZ_CP019509.1_991769_993314_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|171aa|up_7|NZ_CP019509.1_993306_993819_+	PRK13921, PRK13921, CRISPR-associated Cse2 family protein; Provisional	cas7|379aa|up_6|NZ_CP019509.1_993852_994989_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|223aa|up_5|NZ_CP019509.1_994990_995659_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|206aa|up_4|NZ_CP019509.1_995633_996251_+	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas1|308aa|up_3|NZ_CP019509.1_996250_997174_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|99aa|up_2|NZ_CP019509.1_997154_997451_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|170aa|up_1|NZ_CP019509.1_999343_999853_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|177aa|up_0|NZ_CP019509.1_999870_1000401_-	pfam13592, HTH_33, Winged helix-turn helix	NA|127aa|down_0|NZ_CP019509.1_1001819_1002200_-	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional	NA|245aa|down_1|NZ_CP019509.1_1002196_1002931_-	PRK05265, PRK05265, pyridoxine 5'-phosphate synthase; Provisional	NA|241aa|down_2|NZ_CP019509.1_1002996_1003719_-	PRK00085, recO, DNA repair protein RecO; Reviewed	NA|298aa|down_3|NZ_CP019509.1_1003732_1004626_-	PRK00089, era, GTPase Era; Reviewed	NA|235aa|down_4|NZ_CP019509.1_1004775_1005480_-	PRK00102, rnc, ribonuclease III; Reviewed	NA|323aa|down_5|NZ_CP019509.1_1005625_1006594_-	PRK10861, PRK10861, signal peptidase I	NA|598aa|down_6|NZ_CP019509.1_1006667_1008461_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|80aa|down_7|NZ_CP019509.1_1008596_1008836_-	pfam05768, DUF836, Glutaredoxin-like domain (DUF836)	NA|469aa|down_8|NZ_CP019509.1_1009124_1010531_-	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|154aa|down_9|NZ_CP019509.1_1010518_1010980_-	pfam04246, RseC_MucC, Positive regulator of sigma(E), RseC/MucC
GCF_002002905.1_ASM200290v1	NZ_CP019509	Aquaspirillum sp. LM1 chromosome, complete genome	4	1176383-1178670	3,4,3,4,4	PILER-CR,CRISPRCasFinder,CRT,PILER-CR,CRT	no	cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	csa3,c2c9_V-U4,WYL,cas14j,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas3-cas2,cas8f,cas5f,cas7f,cas6f,PD-DExK,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,DinG	Type I-F	GTTCACTGCCGAATAGGCAGCTTAGAAA,GTTCACTGCCGAATAGGCAGCTTAGAAA,GTTCACTGCCGAATAGGCAGCTTAGAAA,GTTCACTGCCGAATAGGCAGCTTAGAAA,GTTCACTGCCGAATAGGCAGCTTAGAAA	28,28,28,28,28	1	1	1176952-1176983	NZ_CP019509.1_1658698-1658667	I-F:I-F:I-F:I-F:I-F	34,37,37,34,37	37	TypeI-F	csa3,c2c9_V-U4,WYL,cas14j,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas3-cas2,cas8f,cas5f,cas7f,cas6f,PD-DExK,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,DinG	NA,NA|413aa|down_0|NZ_CP019509.1_1180395_1181634_-,NA|190aa|down_4|NZ_CP019509.1_1184335_1184905_-	NA|263aa|up_9|NZ_CP019509.1_1163091_1163880_-	cd01639, IMPase, IMPase, inositol monophosphatase and related domains	NA|253aa|up_8|NZ_CP019509.1_1164042_1164801_+	COG0565, LasT, rRNA methylase [Translation, ribosomal structure and biogenesis]	NA|301aa|up_7|NZ_CP019509.1_1164797_1165700_+	pfam08907, DUF1853, Domain of unknown function (DUF1853)	cas1|333aa|up_6|NZ_CP019509.1_1165953_1166952_+	cd09718, Cas1_I-F, CRISPR/Cas system-associated protein Cas1	cas3-cas2|1136aa|up_5|NZ_CP019509.1_1166948_1170356_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	NA|321aa|up_4|NZ_CP019509.1_1170635_1171598_-	pfam04754, Transposase_31, Putative transposase, YhgA-like	cas8f|464aa|up_3|NZ_CP019509.1_1172205_1173597_+	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	cas5f|332aa|up_2|NZ_CP019509.1_1173593_1174589_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|341aa|up_1|NZ_CP019509.1_1174623_1175646_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|198aa|up_0|NZ_CP019509.1_1175647_1176241_+	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	NA|413aa|down_0|NZ_CP019509.1_1180395_1181634_-	NA	NA|254aa|down_1|NZ_CP019509.1_1181638_1182400_-	pfam17131, LolA_like, Outer membrane lipoprotein-sorting protein	NA|404aa|down_2|NZ_CP019509.1_1182414_1183626_-	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|235aa|down_3|NZ_CP019509.1_1183634_1184339_-	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|190aa|down_4|NZ_CP019509.1_1184335_1184905_-	NA	NA|379aa|down_5|NZ_CP019509.1_1185170_1186307_+	COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]	NA|457aa|down_6|NZ_CP019509.1_1187060_1188431_+	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system	NA|322aa|down_7|NZ_CP019509.1_1188443_1189409_+	pfam14491, DUF4435, Protein of unknown function (DUF4435)	NA|110aa|down_8|NZ_CP019509.1_1189541_1189871_+	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|350aa|down_9|NZ_CP019509.1_1189953_1191003_+	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system
GCF_002002905.1_ASM200290v1	NZ_CP019509	Aquaspirillum sp. LM1 chromosome, complete genome	5	1178755-1179744	5,5,5	CRT,CRISPRCasFinder,PILER-CR	no	cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	csa3,c2c9_V-U4,WYL,cas14j,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas3-cas2,cas8f,cas5f,cas7f,cas6f,PD-DExK,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,DinG	Type I-F	GTTCACTGCCGAATAGGCAGCTTAGAAA,GTTCACTGCCGAATAGGCAGCTTAGAAA,GTTCACTGCCGAATAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	16,15,12	16	TypeI-F	csa3,c2c9_V-U4,WYL,cas14j,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas3-cas2,cas8f,cas5f,cas7f,cas6f,PD-DExK,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,DinG	NA,NA|413aa|down_0|NZ_CP019509.1_1180395_1181634_-,NA|190aa|down_4|NZ_CP019509.1_1184335_1184905_-	NA|263aa|up_9|NZ_CP019509.1_1163091_1163880_-	cd01639, IMPase, IMPase, inositol monophosphatase and related domains	NA|253aa|up_8|NZ_CP019509.1_1164042_1164801_+	COG0565, LasT, rRNA methylase [Translation, ribosomal structure and biogenesis]	NA|301aa|up_7|NZ_CP019509.1_1164797_1165700_+	pfam08907, DUF1853, Domain of unknown function (DUF1853)	cas1|333aa|up_6|NZ_CP019509.1_1165953_1166952_+	cd09718, Cas1_I-F, CRISPR/Cas system-associated protein Cas1	cas3-cas2|1136aa|up_5|NZ_CP019509.1_1166948_1170356_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	NA|321aa|up_4|NZ_CP019509.1_1170635_1171598_-	pfam04754, Transposase_31, Putative transposase, YhgA-like	cas8f|464aa|up_3|NZ_CP019509.1_1172205_1173597_+	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	cas5f|332aa|up_2|NZ_CP019509.1_1173593_1174589_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|341aa|up_1|NZ_CP019509.1_1174623_1175646_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|198aa|up_0|NZ_CP019509.1_1175647_1176241_+	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	NA|413aa|down_0|NZ_CP019509.1_1180395_1181634_-	NA	NA|254aa|down_1|NZ_CP019509.1_1181638_1182400_-	pfam17131, LolA_like, Outer membrane lipoprotein-sorting protein	NA|404aa|down_2|NZ_CP019509.1_1182414_1183626_-	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|235aa|down_3|NZ_CP019509.1_1183634_1184339_-	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|190aa|down_4|NZ_CP019509.1_1184335_1184905_-	NA	NA|379aa|down_5|NZ_CP019509.1_1185170_1186307_+	COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]	NA|457aa|down_6|NZ_CP019509.1_1187060_1188431_+	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system	NA|322aa|down_7|NZ_CP019509.1_1188443_1189409_+	pfam14491, DUF4435, Protein of unknown function (DUF4435)	NA|110aa|down_8|NZ_CP019509.1_1189541_1189871_+	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|350aa|down_9|NZ_CP019509.1_1189953_1191003_+	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system
GCF_002002905.1_ASM200290v1	NZ_CP019509	Aquaspirillum sp. LM1 chromosome, complete genome	6	1179889-1180276	6,6,6	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	csa3,c2c9_V-U4,WYL,cas14j,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas3-cas2,cas8f,cas5f,cas7f,cas6f,PD-DExK,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,DinG	Type I-F	GTTCACTGCCGAATAGGCAGCTTAGAAA,GTTCACTGCCGAATAGGCAGCTTAGAAA,GTTCACTGCCGAATAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	5,6,6	6	TypeI-F	csa3,c2c9_V-U4,WYL,cas14j,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas3-cas2,cas8f,cas5f,cas7f,cas6f,PD-DExK,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,DinG	NA,NA|413aa|down_0|NZ_CP019509.1_1180395_1181634_-,NA|190aa|down_4|NZ_CP019509.1_1184335_1184905_-	NA|263aa|up_9|NZ_CP019509.1_1163091_1163880_-	cd01639, IMPase, IMPase, inositol monophosphatase and related domains	NA|253aa|up_8|NZ_CP019509.1_1164042_1164801_+	COG0565, LasT, rRNA methylase [Translation, ribosomal structure and biogenesis]	NA|301aa|up_7|NZ_CP019509.1_1164797_1165700_+	pfam08907, DUF1853, Domain of unknown function (DUF1853)	cas1|333aa|up_6|NZ_CP019509.1_1165953_1166952_+	cd09718, Cas1_I-F, CRISPR/Cas system-associated protein Cas1	cas3-cas2|1136aa|up_5|NZ_CP019509.1_1166948_1170356_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	NA|321aa|up_4|NZ_CP019509.1_1170635_1171598_-	pfam04754, Transposase_31, Putative transposase, YhgA-like	cas8f|464aa|up_3|NZ_CP019509.1_1172205_1173597_+	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	cas5f|332aa|up_2|NZ_CP019509.1_1173593_1174589_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|341aa|up_1|NZ_CP019509.1_1174623_1175646_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|198aa|up_0|NZ_CP019509.1_1175647_1176241_+	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	NA|413aa|down_0|NZ_CP019509.1_1180395_1181634_-	NA	NA|254aa|down_1|NZ_CP019509.1_1181638_1182400_-	pfam17131, LolA_like, Outer membrane lipoprotein-sorting protein	NA|404aa|down_2|NZ_CP019509.1_1182414_1183626_-	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|235aa|down_3|NZ_CP019509.1_1183634_1184339_-	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|190aa|down_4|NZ_CP019509.1_1184335_1184905_-	NA	NA|379aa|down_5|NZ_CP019509.1_1185170_1186307_+	COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]	NA|457aa|down_6|NZ_CP019509.1_1187060_1188431_+	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system	NA|322aa|down_7|NZ_CP019509.1_1188443_1189409_+	pfam14491, DUF4435, Protein of unknown function (DUF4435)	NA|110aa|down_8|NZ_CP019509.1_1189541_1189871_+	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|350aa|down_9|NZ_CP019509.1_1189953_1191003_+	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system
GCF_002002905.1_ASM200290v1	NZ_CP019509	Aquaspirillum sp. LM1 chromosome, complete genome	7	1194966-1195081	7	CRISPRCasFinder	no	cas6f	csa3,c2c9_V-U4,WYL,cas14j,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas3-cas2,cas8f,cas5f,cas7f,cas6f,PD-DExK,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,DinG	Unclear	CGCCTGGATTCCCGCCTGCGCGGGAATGACG	31	0	0	NA	NA	I-E	1	1	Unclear	csa3,c2c9_V-U4,WYL,cas14j,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas3-cas2,cas8f,cas5f,cas7f,cas6f,PD-DExK,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,DinG	NA|190aa|up_9|NZ_CP019509.1_1184335_1184905_-,NA|206aa|up_3|NZ_CP019509.1_1190999_1191617_+,NA|126aa|down_4|NZ_CP019509.1_1198984_1199362_+	NA|190aa|up_9|NZ_CP019509.1_1184335_1184905_-	NA	NA|379aa|up_8|NZ_CP019509.1_1185170_1186307_+	COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]	NA|457aa|up_7|NZ_CP019509.1_1187060_1188431_+	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system	NA|322aa|up_6|NZ_CP019509.1_1188443_1189409_+	pfam14491, DUF4435, Protein of unknown function (DUF4435)	NA|110aa|up_5|NZ_CP019509.1_1189541_1189871_+	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|350aa|up_4|NZ_CP019509.1_1189953_1191003_+	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system	NA|206aa|up_3|NZ_CP019509.1_1190999_1191617_+	NA	NA|298aa|up_2|NZ_CP019509.1_1191769_1192663_+	cd08421, PBP2_LTTR_like_1, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|469aa|up_1|NZ_CP019509.1_1192880_1194287_+	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit	NA|213aa|up_0|NZ_CP019509.1_1194300_1194939_+	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit	NA|356aa|down_0|NZ_CP019509.1_1195383_1196451_+	PRK00772, PRK00772, 3-isopropylmalate dehydrogenase; Provisional	NA|372aa|down_1|NZ_CP019509.1_1196650_1197766_+	PRK06598, PRK06598, aspartate-semialdehyde dehydrogenase; Reviewed	NA|183aa|down_2|NZ_CP019509.1_1198077_1198626_+	PRK09267, PRK09267, flavodoxin FldA; Validated	NA|105aa|down_3|NZ_CP019509.1_1198673_1198988_+	cd01444, GlpE_ST, GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily	NA|126aa|down_4|NZ_CP019509.1_1198984_1199362_+	NA	NA|243aa|down_5|NZ_CP019509.1_1199501_1200230_+	cd03020, DsbA_DsbC_DsbG, DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold	NA|294aa|down_6|NZ_CP019509.1_1200376_1201258_-	cd01144, BtuF, Cobalamin binding protein BtuF	NA|201aa|down_7|NZ_CP019509.1_1202858_1203461_-	PRK00031, lolA, outer membrane lipoprotein chaperone LolA	NA|531aa|down_8|NZ_CP019509.1_1203675_1205268_-	PRK13981, PRK13981, NAD synthetase; Provisional	NA|313aa|down_9|NZ_CP019509.1_1206129_1207068_+	pfam05114, DUF692, Protein of unknown function (DUF692)
GCF_002002905.1_ASM200290v1	NZ_CP019509	Aquaspirillum sp. LM1 chromosome, complete genome	8	1239557-1241598	7,8,7	PILER-CR,CRISPRCasFinder,CRT	no		csa3,c2c9_V-U4,WYL,cas14j,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas3-cas2,cas8f,cas5f,cas7f,cas6f,PD-DExK,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,DinG	Orphan	GTGTTCCCCGCAGACGCGGGGATGAACC,GTGTTCCCCGCAGACGCGGGGATGAACCG,GTGTTCCCCGCAGACGCGGGGATGAACCG	28,29,29	0	0	NA	NA	I-E:I-E:I-E	33,33,33	33	Orphan	csa3,c2c9_V-U4,WYL,cas14j,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas3-cas2,cas8f,cas5f,cas7f,cas6f,PD-DExK,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,DinG	NA|65aa|up_8|NZ_CP019509.1_1230621_1230816_+,NA|83aa|up_5|NZ_CP019509.1_1231840_1232089_-,NA|124aa|down_0|NZ_CP019509.1_1241731_1242103_+	NA|628aa|up_9|NZ_CP019509.1_1228354_1230238_-	PRK05354, PRK05354, biosynthetic arginine decarboxylase	NA|65aa|up_8|NZ_CP019509.1_1230621_1230816_+	NA	NA|41aa|up_7|NZ_CP019509.1_1231084_1231207_-	pfam11346, DUF3149, Protein of unknown function (DUF3149)	NA|129aa|up_6|NZ_CP019509.1_1231421_1231808_+	COG3671, COG3671, Predicted membrane protein [Function unknown]	NA|83aa|up_5|NZ_CP019509.1_1231840_1232089_-	NA	NA|568aa|up_4|NZ_CP019509.1_1232312_1234016_+	PRK08155, PRK08155, acetolactate synthase large subunit	NA|97aa|up_3|NZ_CP019509.1_1234018_1234309_+	PRK08178, PRK08178, acetolactate synthase 1 small subunit	NA|377aa|up_2|NZ_CP019509.1_1234842_1235973_-	pfam01734, Patatin, Patatin-like phospholipase	NA|377aa|up_1|NZ_CP019509.1_1236077_1237208_-	pfam01734, Patatin, Patatin-like phospholipase	NA|379aa|up_0|NZ_CP019509.1_1238166_1239303_-	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated	NA|124aa|down_0|NZ_CP019509.1_1241731_1242103_+	NA	NA|105aa|down_1|NZ_CP019509.1_1242356_1242671_+	pfam06865, DUF1255, Protein of unknown function (DUF1255)	NA|122aa|down_2|NZ_CP019509.1_1242762_1243128_-	cd03035, ArsC_Yffb, Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC	NA|561aa|down_3|NZ_CP019509.1_1243232_1244915_-	PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated	NA|142aa|down_4|NZ_CP019509.1_1245304_1245730_+	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|493aa|down_5|NZ_CP019509.1_1245873_1247352_+	PRK09202, nusA, transcription elongation factor NusA; Validated	NA|1039aa|down_6|NZ_CP019509.1_1247428_1250545_+	PRK05306, infB, translation initiation factor IF-2; Validated	NA|138aa|down_7|NZ_CP019509.1_1250626_1251040_+	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|307aa|down_8|NZ_CP019509.1_1251155_1252076_+	PRK05033, truB, tRNA pseudouridine synthase B; Provisional	NA|90aa|down_9|NZ_CP019509.1_1252172_1252442_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed
GCF_002002905.1_ASM200290v1	NZ_CP019509	Aquaspirillum sp. LM1 chromosome, complete genome	9	1360630-1360720	9	CRISPRCasFinder	no		csa3,c2c9_V-U4,WYL,cas14j,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas3-cas2,cas8f,cas5f,cas7f,cas6f,PD-DExK,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,DinG	Orphan	CGGGCTTCGGCTTCGGCGGCTTCCT	25	0	0	NA	NA	NA	1	1	Orphan	csa3,c2c9_V-U4,WYL,cas14j,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas3-cas2,cas8f,cas5f,cas7f,cas6f,PD-DExK,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,DinG	NA|124aa|up_5|NZ_CP019509.1_1355413_1355785_+,NA|184aa|down_6|NZ_CP019509.1_1367419_1367971_+,NA|279aa|down_8|NZ_CP019509.1_1368900_1369737_+	NA|426aa|up_9|NZ_CP019509.1_1348386_1349664_+	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|562aa|up_8|NZ_CP019509.1_1349671_1351357_+	COG2189, COG2189, Adenine specific DNA methylase Mod [DNA replication, recombination, and repair]	NA|936aa|up_7|NZ_CP019509.1_1351349_1354157_+	pfam04851, ResIII, Type III restriction enzyme, res subunit	NA|282aa|up_6|NZ_CP019509.1_1354476_1355322_+	cd01572, QPRTase, Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes	NA|124aa|up_5|NZ_CP019509.1_1355413_1355785_+	NA	NA|203aa|up_4|NZ_CP019509.1_1355848_1356457_+	TIGR02292, Hypothetical_protein_yecA	NA|276aa|up_3|NZ_CP019509.1_1356475_1357303_-	PRK05993, PRK05993, SDR family oxidoreductase	NA|319aa|up_2|NZ_CP019509.1_1357443_1358400_+	TIGR03718, R_switched_Alx, integral membrane protein, TerC family	NA|398aa|up_1|NZ_CP019509.1_1358486_1359680_-	COG1398, OLE1, Fatty-acid desaturase [Lipid metabolism]	NA|226aa|up_0|NZ_CP019509.1_1359812_1360490_+	PRK00024, PRK00024, DNA repair protein RadC	NA|299aa|down_0|NZ_CP019509.1_1362237_1363134_+	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD	NA|189aa|down_1|NZ_CP019509.1_1363220_1363787_+	pfam01923, Cob_adeno_trans, Cobalamin adenosyltransferase	NA|276aa|down_2|NZ_CP019509.1_1363794_1364622_-	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|470aa|down_3|NZ_CP019509.1_1364621_1366031_-	COG1875, COG1875, NYN ribonuclease and ATPase of PhoH family domains [General    function prediction only]	NA|151aa|down_4|NZ_CP019509.1_1366139_1366592_-	cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of  thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides	NA|244aa|down_5|NZ_CP019509.1_1366691_1367423_+	pfam02405, MlaE, Permease MlaE	NA|184aa|down_6|NZ_CP019509.1_1367419_1367971_+	NA	NA|305aa|down_7|NZ_CP019509.1_1368002_1368917_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|279aa|down_8|NZ_CP019509.1_1368900_1369737_+	NA	NA|142aa|down_9|NZ_CP019509.1_1370129_1370555_-	pfam04304, DUF454, Protein of unknown function (DUF454)
GCF_002002905.1_ASM200290v1	NZ_CP019509	Aquaspirillum sp. LM1 chromosome, complete genome	10	1457519-1457646	10	CRISPRCasFinder	no	c2c9_V-U4	csa3,c2c9_V-U4,WYL,cas14j,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas3-cas2,cas8f,cas5f,cas7f,cas6f,PD-DExK,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,DinG	Type V-U4	CCGCCATTGCCACCGGCTCCGCCATTGCC	29	0	0	NA	NA	NA	1	1	TypeV-U4	csa3,c2c9_V-U4,WYL,cas14j,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas3-cas2,cas8f,cas5f,cas7f,cas6f,PD-DExK,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,DinG	NA|159aa|up_7|NZ_CP019509.1_1442637_1443114_-,NA|141aa|down_0|NZ_CP019509.1_1458524_1458947_-	NA|768aa|up_9|NZ_CP019509.1_1438468_1440772_-	COG2183, Tex, Transcriptional accessory protein [Transcription]	NA|488aa|up_8|NZ_CP019509.1_1441024_1442488_-	PRK00029, PRK00029, YdiU family protein	NA|159aa|up_7|NZ_CP019509.1_1442637_1443114_-	NA	NA|293aa|up_6|NZ_CP019509.1_1443452_1444331_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|102aa|up_5|NZ_CP019509.1_1444721_1445027_+	pfam04341, DUF485, Protein of unknown function, DUF485	NA|558aa|up_4|NZ_CP019509.1_1445027_1446701_+	PRK09395, actP, cation/acetate symporter ActP	NA|655aa|up_3|NZ_CP019509.1_1446776_1448741_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|1713aa|up_2|NZ_CP019509.1_1448894_1454033_-	COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|831aa|up_1|NZ_CP019509.1_1454078_1456571_-	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|227aa|up_0|NZ_CP019509.1_1456575_1457256_-	PHA03169, PHA03169, hypothetical protein; Provisional	NA|141aa|down_0|NZ_CP019509.1_1458524_1458947_-	NA	NA|1343aa|down_1|NZ_CP019509.1_1458961_1462990_-	cd14962, NHL_like_6, Uncharacterized NHL-repeat domain in bacterial proteins	NA|409aa|down_2|NZ_CP019509.1_1463704_1464931_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|329aa|down_3|NZ_CP019509.1_1465320_1466307_+	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|331aa|down_4|NZ_CP019509.1_1466874_1467867_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|411aa|down_5|NZ_CP019509.1_1468139_1469372_+	COG2715, SpmA, Uncharacterized membrane protein, required for spore maturation in B	NA|655aa|down_6|NZ_CP019509.1_1469670_1471635_+	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|101aa|down_7|NZ_CP019509.1_1471726_1472029_-	COG2329, COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only]	NA|46aa|down_8|NZ_CP019509.1_1472128_1472266_-	pfam10136, SpecificRecomb, Site-specific recombinase	c2c9_V-U4|425aa|down_9|NZ_CP019509.1_1472392_1473667_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_002002905.1_ASM200290v1	NZ_CP019509	Aquaspirillum sp. LM1 chromosome, complete genome	11	1710872-1711183	8,11,8	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas2,PD-DExK,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6	csa3,c2c9_V-U4,WYL,cas14j,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas3-cas2,cas8f,cas5f,cas7f,cas6f,PD-DExK,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,DinG	Type III-B,Type III-D,Type III-A,Type III-C	GTCTTAATCCCTTAGAGATCAGGGAAACCACTAGAG,GTCTTAATCCCTTAGAGATCAGGGAAACCACTAGAG,GTCTTAATCCCTTAGAGATCAGGGAAACCACTAGAG	36,36,36	0	0	NA	NA	NA:NA:NA	4,4,4	4	TypeIII-B,TypeIII-D,TypeIII-A,TypeIII-C	csa3,c2c9_V-U4,WYL,cas14j,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas3-cas2,cas8f,cas5f,cas7f,cas6f,PD-DExK,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,DinG	NA|109aa|up_2|NZ_CP019509.1_1708898_1709225_+,PD-DExK|311aa|down_0|NZ_CP019509.1_1711317_1712250_-	NA|278aa|up_9|NZ_CP019509.1_1699527_1700361_-	pfam13679, Methyltransf_32, Methyltransferase domain	NA|556aa|up_8|NZ_CP019509.1_1700571_1702239_-	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed	NA|404aa|up_7|NZ_CP019509.1_1702481_1703693_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|316aa|up_6|NZ_CP019509.1_1703849_1704797_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|209aa|up_5|NZ_CP019509.1_1704820_1705447_+	COG2840, COG2840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|750aa|up_4|NZ_CP019509.1_1705693_1707943_+	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS	NA|263aa|up_3|NZ_CP019509.1_1707920_1708709_+	COG4566, TtrR, Response regulator [Signal transduction mechanisms]	NA|109aa|up_2|NZ_CP019509.1_1708898_1709225_+	NA	cas1|166aa|up_1|NZ_CP019509.1_1709924_1710422_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas2|95aa|up_0|NZ_CP019509.1_1710430_1710715_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	PD-DExK|311aa|down_0|NZ_CP019509.1_1711317_1712250_-	NA	cmr6gr7|343aa|down_1|NZ_CP019509.1_1712378_1713407_-	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6	cmr5gr11|133aa|down_2|NZ_CP019509.1_1713403_1713802_-	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5)	cmr4gr7|304aa|down_3|NZ_CP019509.1_1713798_1714710_-	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4	cmr3gr5|409aa|down_4|NZ_CP019509.1_1714727_1715954_-	pfam09700, Cas_Cmr3, CRISPR-associated protein (Cas_Cmr3)	cas10|666aa|down_5|NZ_CP019509.1_1715950_1717948_-	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr1gr7|425aa|down_6|NZ_CP019509.1_1717944_1719219_-	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	cas6|294aa|down_7|NZ_CP019509.1_1719261_1720143_-	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6	NA|419aa|down_8|NZ_CP019509.1_1721232_1722489_-	pfam18145, SAVED, SMODS-associated and fused to various effectors sensor domain	NA|253aa|down_9|NZ_CP019509.1_1722657_1723416_-	cd02563, PseudoU_synth_TruC, tRNA pseudouridine isomerase C
GCF_002002905.1_ASM200290v1	NZ_CP019509	Aquaspirillum sp. LM1 chromosome, complete genome	12	1720601-1721049	9,12,9	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas2,PD-DExK,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6	csa3,c2c9_V-U4,WYL,cas14j,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas3-cas2,cas8f,cas5f,cas7f,cas6f,PD-DExK,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,DinG	Type III-B,Type III-D,Type III-A,Type III-C	GTCTTAATCCCTTAGAGATCAGGGAAACCACTAGAG,GTCTTAATCCCTTAGAGATCAGGGAAACCACTAGAG,GTCTTAATCCCTTAGAGATCAGGGAAACCACTAGAG	36,36,36	0	0	NA	NA	NA:NA:NA	6,6,6	6	TypeIII-B,TypeIII-D,TypeIII-A,TypeIII-C	csa3,c2c9_V-U4,WYL,cas14j,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas3-cas2,cas8f,cas5f,cas7f,cas6f,PD-DExK,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,DinG	PD-DExK|311aa|up_7|NZ_CP019509.1_1711317_1712250_-,NA	cas1|166aa|up_9|NZ_CP019509.1_1709924_1710422_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas2|95aa|up_8|NZ_CP019509.1_1710430_1710715_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	PD-DExK|311aa|up_7|NZ_CP019509.1_1711317_1712250_-	NA	cmr6gr7|343aa|up_6|NZ_CP019509.1_1712378_1713407_-	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6	cmr5gr11|133aa|up_5|NZ_CP019509.1_1713403_1713802_-	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5)	cmr4gr7|304aa|up_4|NZ_CP019509.1_1713798_1714710_-	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4	cmr3gr5|409aa|up_3|NZ_CP019509.1_1714727_1715954_-	pfam09700, Cas_Cmr3, CRISPR-associated protein (Cas_Cmr3)	cas10|666aa|up_2|NZ_CP019509.1_1715950_1717948_-	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr1gr7|425aa|up_1|NZ_CP019509.1_1717944_1719219_-	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	cas6|294aa|up_0|NZ_CP019509.1_1719261_1720143_-	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6	NA|419aa|down_0|NZ_CP019509.1_1721232_1722489_-	pfam18145, SAVED, SMODS-associated and fused to various effectors sensor domain	NA|253aa|down_1|NZ_CP019509.1_1722657_1723416_-	cd02563, PseudoU_synth_TruC, tRNA pseudouridine isomerase C	NA|213aa|down_2|NZ_CP019509.1_1723444_1724083_-	TIGR00558, Pyridoxine/pyridoxamine_5'-phosphate_oxidase, pyridoxamine-phosphate oxidase	NA|415aa|down_3|NZ_CP019509.1_1724382_1725627_+	TIGR02212, releasing_system_transmembrane_protein_lolC	NA|233aa|down_4|NZ_CP019509.1_1725619_1726318_+	TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein	NA|442aa|down_5|NZ_CP019509.1_1726314_1727640_+	COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]	NA|205aa|down_6|NZ_CP019509.1_1727636_1728251_+	COG4566, TtrR, Response regulator [Signal transduction mechanisms]	NA|154aa|down_7|NZ_CP019509.1_1728254_1728716_+	PRK09438, nudB, dihydroneopterin triphosphate pyrophosphatase; Provisional	NA|253aa|down_8|NZ_CP019509.1_1728715_1729474_+	COG3568, ElsH, Metal-dependent hydrolase [General function prediction only]	NA|391aa|down_9|NZ_CP019509.1_1729479_1730652_+	PRK11263, PRK11263, cardiolipin synthase ClsB
GCF_002002905.1_ASM200290v1	NZ_CP019509	Aquaspirillum sp. LM1 chromosome, complete genome	13	1730725-1730899	13	CRISPRCasFinder	no	PD-DExK,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6	csa3,c2c9_V-U4,WYL,cas14j,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas3-cas2,cas8f,cas5f,cas7f,cas6f,PD-DExK,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,DinG	Type III-B,Type III-D,Type III-A,Type III-C	GTCTTAATCCCTTAGAGATCAGGGAAACTACTTGAGAG	38	0	0	NA	NA	NA	2	2	TypeIII-B,TypeIII-D,TypeIII-A,TypeIII-C	csa3,c2c9_V-U4,WYL,cas14j,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas3-cas2,cas8f,cas5f,cas7f,cas6f,PD-DExK,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,DinG	NA,NA|132aa|down_0|NZ_CP019509.1_1731082_1731478_+	NA|419aa|up_9|NZ_CP019509.1_1721232_1722489_-	pfam18145, SAVED, SMODS-associated and fused to various effectors sensor domain	NA|253aa|up_8|NZ_CP019509.1_1722657_1723416_-	cd02563, PseudoU_synth_TruC, tRNA pseudouridine isomerase C	NA|213aa|up_7|NZ_CP019509.1_1723444_1724083_-	TIGR00558, Pyridoxine/pyridoxamine_5'-phosphate_oxidase, pyridoxamine-phosphate oxidase	NA|415aa|up_6|NZ_CP019509.1_1724382_1725627_+	TIGR02212, releasing_system_transmembrane_protein_lolC	NA|233aa|up_5|NZ_CP019509.1_1725619_1726318_+	TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein	NA|442aa|up_4|NZ_CP019509.1_1726314_1727640_+	COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]	NA|205aa|up_3|NZ_CP019509.1_1727636_1728251_+	COG4566, TtrR, Response regulator [Signal transduction mechanisms]	NA|154aa|up_2|NZ_CP019509.1_1728254_1728716_+	PRK09438, nudB, dihydroneopterin triphosphate pyrophosphatase; Provisional	NA|253aa|up_1|NZ_CP019509.1_1728715_1729474_+	COG3568, ElsH, Metal-dependent hydrolase [General function prediction only]	NA|391aa|up_0|NZ_CP019509.1_1729479_1730652_+	PRK11263, PRK11263, cardiolipin synthase ClsB	NA|132aa|down_0|NZ_CP019509.1_1731082_1731478_+	NA	NA|364aa|down_1|NZ_CP019509.1_1731738_1732830_-	PRK07209, PRK07209, ribonucleotide-diphosphate reductase subunit beta; Validated	NA|1333aa|down_2|NZ_CP019509.1_1733014_1737013_-	PRK07207, PRK07207, ribonucleoside-diphosphate reductase subunit alpha	NA|605aa|down_3|NZ_CP019509.1_1737557_1739372_+	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]	NA|233aa|down_4|NZ_CP019509.1_1739502_1740201_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|438aa|down_5|NZ_CP019509.1_1740436_1741750_-	PRK09045, PRK09045, TRZ/ATZ family hydrolase	NA|373aa|down_6|NZ_CP019509.1_1742740_1743859_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|346aa|down_7|NZ_CP019509.1_1743919_1744957_+	cd13589, PBP2_polyamine_RpCGA009, The periplasmic-binding component of an uncharacterized ABC transport system from Rhodopseudomonas palustris CGA009 and related proteins; contains the type 2 periplasmic-binding fold	NA|420aa|down_8|NZ_CP019509.1_1745117_1746377_+	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]	NA|277aa|down_9|NZ_CP019509.1_1746387_1747218_+	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]
GCF_002002905.1_ASM200290v1	NZ_CP019509	Aquaspirillum sp. LM1 chromosome, complete genome	14	2154090-2154899	10,14,10	PILER-CR,CRISPRCasFinder,CRT	no		csa3,c2c9_V-U4,WYL,cas14j,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas3-cas2,cas8f,cas5f,cas7f,cas6f,PD-DExK,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,DinG	Orphan	GTGAACTGCCGAATAGGCAGCTGAGAAA,TTTCTCAGCTGCCTATTCGGCAGTTCAC,TTTCTCAGCTGCCTATTCGGCAGTTCAC	28,28,28	0	0	NA	NA	I-F:I-F:I-F	13,13,13	13	Orphan	csa3,c2c9_V-U4,WYL,cas14j,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas3-cas2,cas8f,cas5f,cas7f,cas6f,PD-DExK,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,DinG	NA,NA	NA|310aa|up_9|NZ_CP019509.1_2133412_2134342_-	COG0559, LivH, Branched-chain amino acid ABC-type transport system, permease components [Amino acid transport and metabolism]	NA|350aa|up_8|NZ_CP019509.1_2134935_2135985_-	pfam04958, AstA, Arginine N-succinyltransferase beta subunit	NA|346aa|up_7|NZ_CP019509.1_2135981_2137019_-	pfam04958, AstA, Arginine N-succinyltransferase beta subunit	NA|132aa|up_6|NZ_CP019509.1_2143453_2143849_+	cd04776, HTH_GnyR, Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR	NA|391aa|up_5|NZ_CP019509.1_2143979_2145152_+	cd01156, IVD, Isovaleryl-CoA dehydrogenase	NA|533aa|up_4|NZ_CP019509.1_2145183_2146782_+	PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain	NA|270aa|up_3|NZ_CP019509.1_2146798_2147608_+	PRK05995, PRK05995, enoyl-CoA hydratase; Provisional	NA|653aa|up_2|NZ_CP019509.1_2147662_2149621_+	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|306aa|up_1|NZ_CP019509.1_2149656_2150574_+	PRK05692, PRK05692, hydroxymethylglutaryl-CoA lyase; Provisional	NA|649aa|up_0|NZ_CP019509.1_2151746_2153693_+	PRK03584, PRK03584, acetoacetate--CoA ligase	NA|474aa|down_0|NZ_CP019509.1_2155047_2156469_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|458aa|down_1|NZ_CP019509.1_2156601_2157975_+	TIGR02745, iron-sulfur_cluster-binding_protein, cytochrome c oxidase accessory protein FixG	NA|405aa|down_2|NZ_CP019509.1_2158109_2159324_+	PRK11815, PRK11815, tRNA dihydrouridine(20/20a) synthase DusA	NA|200aa|down_3|NZ_CP019509.1_2159748_2160348_+	PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed	NA|399aa|down_4|NZ_CP019509.1_2160344_2161541_+	PRK08898, PRK08898, oxygen-independent coproporphyrinogen III oxidase-like protein	NA|185aa|down_5|NZ_CP019509.1_2161560_2162115_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|167aa|down_6|NZ_CP019509.1_2162225_2162726_+	pfam04982, HPP, HPP family	NA|244aa|down_7|NZ_CP019509.1_2162813_2163545_+	TIGR02325, Probable_transcriptional_regulator_PhnF, phosphonates metabolism transcriptional regulator PhnF	NA|338aa|down_8|NZ_CP019509.1_2163718_2164732_+	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein	NA|197aa|down_9|NZ_CP019509.1_2164765_2165356_+	TIGR03276, Phn-HD, phosphonate degradation operons associated HDIG domain protein
