The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP014423	Staphylococcus aureus strain USA300-SUR17 chromosome, complete genome	2919826	780018	787838	2919826		Hokovirus(16.67%)	10	NA	NA
WP_000244412.1|780018_781074_-	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	30.0	2.1e-14
WP_000149344.1|781073_781760_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|781734_782208_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093553.1|782549_782990_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637687.1|783269_783854_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|783952_784666_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|784669_785089_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|785090_785759_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604514.1|786109_786703_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_001217785.1|786686_787838_+	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	35.7	1.6e-23
>prophage 2
NZ_CP014423	Staphylococcus aureus strain USA300-SUR17 chromosome, complete genome	2919826	799810	814541	2919826		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000663030.1|799810_800869_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
WP_000197273.1|801219_801762_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429014.1|802385_803303_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
WP_001790641.1|803393_803495_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193752.1|803572_805078_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|805418_805919_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|805938_806805_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|807605_808004_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|807966_810072_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|810189_811161_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|811674_811830_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|811868_812840_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245577.1|812826_813783_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616842.1|813779_814541_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
>prophage 3
NZ_CP014423	Staphylococcus aureus strain USA300-SUR17 chromosome, complete genome	2919826	893251	960237	2919826	head,capsid,plate,integrase,tail,terminase,holin,portal	Staphylococcus_phage(63.86%)	92	901054:901073	957016:957035
WP_000571218.1|893251_894277_+	methionine ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.3	3.9e-26
WP_000520233.1|894269_894965_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000732326.1|894982_895804_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000266158.1|895946_897167_-|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	47.5	2.9e-100
WP_000734020.1|897254_897983_-	staphylococcal enterotoxin type K	NA	A0EX09	Staphylococcus_phage	31.8	1.2e-21
WP_001033321.1|898006_898735_-	staphylococcal enterotoxin type Q	NA	A0EX09	Staphylococcus_phage	34.1	1.6e-26
WP_000281658.1|898751_899210_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2I6PEK4	Staphylococcus_phage	82.1	4.3e-65
WP_001260004.1|899221_899554_-	helix-turn-helix transcriptional regulator	NA	A0A1J0MFC1	Staphylococcus_phage	74.5	1.6e-37
WP_000243849.1|899746_900010_+	helix-turn-helix transcriptional regulator	NA	A0A2H4J9X2	uncultured_Caudovirales_phage	94.8	4.1e-36
WP_000091732.1|900002_900275_+	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	88.9	4.8e-40
WP_000784892.1|900286_900460_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001231376.1|900426_900630_+	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	98.5	2.0e-30
WP_000403840.1|900631_901015_+	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.9	4.4e-63
WP_001103959.1|901015_901264_+	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	58.6	1.4e-22
901054:901073	attL	GATATTGAAAGAAAAGTTTG	NA	NA	NA	NA
WP_000985235.1|901355_903728_+	primase	NA	A0A2H4JCU9	uncultured_Caudovirales_phage	39.3	9.8e-137
WP_001081424.1|904398_904743_+	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	65.2	9.4e-41
WP_000884055.1|904967_905174_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000657538.1|905160_906219_+|capsid	phage capsid protein	capsid	A0A0K2CZ99	Paenibacillus_phage	26.6	3.6e-14
WP_000253084.1|906402_906894_+	hypothetical protein	NA	A0A2H4JB26	uncultured_Caudovirales_phage	40.5	7.9e-25
WP_000801979.1|907322_908291_+	Abi family protein	NA	A0A0H4U080	Erysipelothrix_phage	27.3	5.9e-24
WP_001035618.1|908525_909080_-	DUF4888 domain-containing protein	NA	A0A1W6JQE5	Staphylococcus_phage	76.1	4.8e-71
WP_000752917.1|910113_910308_+	CsbD family protein	NA	NA	NA	NA	NA
WP_001183858.1|910540_911392_-	DUF368 domain-containing protein	NA	NA	NA	NA	NA
WP_000168845.1|911719_912481_+	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	23.3	4.4e-06
WP_000205572.1|912578_913886_+	Fe-S cluster assembly protein SufD	NA	NA	NA	NA	NA
WP_001006454.1|913991_915242_+	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.5	1.4e-110
WP_001010508.1|915231_915696_+	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA	NA
WP_001074405.1|915846_917244_+	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
WP_050961182.1|917311_918361_-|integrase	site-specific integrase	integrase	A1KWY3	Staphylococcus_virus	99.7	7.7e-203
WP_050961183.1|918422_918938_-	hypothetical protein	NA	I1W624	Staphylococcus_phage	99.4	1.5e-37
WP_000896616.1|918941_919442_-	hypothetical protein	NA	B7T094	Staphylococcus_virus	100.0	1.1e-71
WP_050961185.1|919489_920164_-	LexA family transcriptional regulator	NA	A0A1W6JPS3	Staphylococcus_phage	91.1	6.6e-115
WP_001014907.1|920355_920595_+	helix-turn-helix transcriptional regulator	NA	A0A2H4J3I3	uncultured_Caudovirales_phage	88.5	1.2e-31
WP_050961186.1|920610_920814_+	hypothetical protein	NA	A0A0E3XBM9	Staphylococcus_phage	98.5	6.1e-32
WP_050961187.1|921001_921793_+	phage antirepressor KilAC domain-containing protein	NA	Q8SDX0	Staphylococcus_phage	99.2	7.2e-145
WP_000187184.1|921793_922018_+	hypothetical protein	NA	A0A0F6N4M2	Staphylococcus_phage	100.0	3.2e-34
WP_025920885.1|922057_922507_+	hypothetical protein	NA	A1KWZ2	Staphylococcus_virus	99.3	6.7e-79
WP_000977378.1|922520_922742_+	hypothetical protein	NA	E0Y3P2	Staphylococcus_virus	100.0	1.5e-31
WP_000066013.1|922734_922902_+	DUF1270 domain-containing protein	NA	S4V7J2	Staphylococcus_phage	96.4	4.0e-21
WP_033843163.1|922902_923223_+	hypothetical protein	NA	S4V968	Staphylococcus_phage	99.1	2.4e-54
WP_000291075.1|923316_923577_+	DUF1108 family protein	NA	A0A059T5A3	Staphylococcus_phage	100.0	1.2e-43
WP_000802315.1|923584_923821_+	hypothetical protein	NA	D2JGJ9	Staphylococcus_phage	100.0	2.7e-39
WP_000002513.1|923813_924293_+	siphovirus Gp157 family protein	NA	D2JGK0	Staphylococcus_phage	100.0	5.3e-82
WP_001288247.1|924292_925066_+	AAA family ATPase	NA	A0EWP9	Staphylococcus_virus	100.0	1.6e-141
WP_050961188.1|925096_925651_+	single-stranded DNA-binding protein	NA	A7TWM8	Staphylococcus_phage	99.5	2.2e-100
WP_050961189.1|925663_926329_+	hypothetical protein	NA	Q4ZDY3	Staphylococcus_virus	98.2	7.7e-124
WP_050961190.1|926328_927111_+	AP2 domain-containing protein	NA	A0A2I6PDA5	Staphylococcus_phage	99.2	4.1e-140
WP_050961191.1|927082_927898_+	phage replisome organizer N-terminal domain-containing protein	NA	Q4ZAS2	Staphylococcus_virus	96.7	8.9e-114
WP_050961192.1|927907_928687_+	ATP-binding protein	NA	Q6R838	Staphylococcus_virus	98.8	5.1e-143
WP_000237153.1|928680_928842_+	hypothetical protein	NA	D2JGK6	Staphylococcus_phage	100.0	4.5e-22
WP_001123688.1|928854_929076_+	DUF3269 family protein	NA	Q9G021	Staphylococcus_phage	100.0	1.3e-35
WP_031898212.1|929085_929493_+	RusA family crossover junction endodeoxyribonuclease	NA	D2JGK8	Staphylococcus_phage	97.8	5.5e-72
WP_031898213.1|929492_929678_+	DUF3113 family protein	NA	A0A0H3U473	Staphylococcus_phage	96.7	6.0e-26
WP_050961193.1|929678_930296_+	hypothetical protein	NA	A0A059T7P3	Staphylococcus_phage	99.0	2.8e-83
WP_050961194.1|930296_930545_+	hypothetical protein	NA	S4V683	Staphylococcus_phage	98.8	1.6e-42
WP_000693615.1|930558_930945_+	hypothetical protein	NA	I1W655	Staphylococcus_phage	100.0	4.1e-69
WP_050961195.1|931132_931558_+	hypothetical protein	NA	A0A2I6PE09	Staphylococcus_phage	100.0	4.8e-79
WP_050961196.1|931571_932081_+	hypothetical protein	NA	A0A1X9H0D4	Staphylococcus_phage	88.8	2.5e-82
WP_001065056.1|932400_932649_+	DUF1024 family protein	NA	Q4ZCN8	Staphylococcus_virus	100.0	2.4e-38
WP_000185662.1|932641_933172_+	dUTP diphosphatase	NA	B2ZYX2	Staphylococcus_phage	100.0	1.9e-96
WP_031764620.1|933208_933415_+	DUF1381 domain-containing protein	NA	B7T0C2	Staphylococcus_virus	97.1	9.3e-20
WP_031924097.1|933411_933585_+	transcriptional regulator	NA	Q4ZBK0	Staphylococcus_phage	98.2	1.9e-21
WP_000990005.1|933585_933732_+	hypothetical protein	NA	B2ZYX7	Staphylococcus_phage	100.0	2.2e-15
WP_000058632.1|933746_934166_+	transcriptional regulator	NA	I1W651	Staphylococcus_phage	100.0	8.1e-71
WP_001003271.1|934352_934793_+|terminase	terminase small subunit	terminase	I1W650	Staphylococcus_phage	100.0	4.8e-74
WP_000169945.1|934779_936057_+|terminase	PBSX family phage terminase large subunit	terminase	S4V685	Staphylococcus_phage	100.0	1.3e-249
WP_000921887.1|936067_937603_+|portal	phage portal protein	portal	A1KX25	Staphylococcus_virus	100.0	5.8e-292
WP_001813737.1|937609_938605_+|capsid	minor capsid protein	capsid	E0Y3K7	Staphylococcus_virus	99.4	3.8e-183
WP_031898218.1|938677_938827_+	hypothetical protein	NA	Q4ZDN0	Staphylococcus_virus	64.3	3.7e-10
WP_031925652.1|938935_939556_+	DUF4355 domain-containing protein	NA	B2ZYY4	Staphylococcus_phage	92.2	1.2e-67
WP_000438500.1|939569_940544_+|capsid	phage major capsid protein	capsid	B7T0D2	Staphylococcus_virus	99.7	1.8e-182
WP_001114085.1|940565_940853_+	hypothetical protein	NA	S4V6D9	Staphylococcus_phage	100.0	4.7e-46
WP_000208959.1|940861_941194_+|head,tail	phage head-tail connector protein	head,tail	E0Y3L2	Staphylococcus_virus	100.0	7.1e-54
WP_031880723.1|941190_941493_+	hypothetical protein	NA	E0Y3L3	Staphylococcus_virus	99.0	7.4e-50
WP_001017815.1|941492_941840_+	HK97 gp10 family phage protein	NA	A0A0F6N3F5	Staphylococcus_phage	100.0	4.1e-60
WP_000188640.1|941851_942235_+	hypothetical protein	NA	E0Y3L5	Staphylococcus_virus	98.4	1.0e-67
WP_031898198.1|942253_942835_+|tail	phage major tail protein, TP901-1 family	tail	Q8SDU0	Staphylococcus_phage	97.9	3.5e-104
WP_031898197.1|942896_943262_+|tail	tail assembly protein	tail	A0A0F6N4J9	Staphylococcus_phage	99.2	6.2e-59
WP_001599101.1|943291_943636_+	hypothetical protein	NA	A0A0F6N3F7	Staphylococcus_phage	99.1	7.2e-57
WP_050961197.1|943652_947120_+	hypothetical protein	NA	A0EWM3	Staphylococcus_virus	99.3	1.7e-246
WP_031898192.1|947132_948080_+|tail	phage tail family protein	tail	Q8SDT6	Staphylococcus_phage	99.7	8.0e-183
WP_000156414.1|948088_949990_+|tail	phage tail protein	tail	Q8SDT5	Staphylococcus_phage	97.9	0.0e+00
WP_050961198.1|950004_951915_+	hypothetical protein	NA	B2ZYZ7	Staphylococcus_phage	99.2	0.0e+00
WP_077467085.1|951914_953738_+|plate	phage baseplate upper protein	plate	B1H3M3	Staphylococcus_phage	99.5	0.0e+00
WP_031844790.1|953737_954115_+	DUF2977 domain-containing protein	NA	A0A0F6N3G4	Staphylococcus_phage	99.2	7.6e-60
WP_000782200.1|954118_954292_+	XkdX family protein	NA	A0A0F6N3L7	Staphylococcus_phage	100.0	6.6e-27
WP_000466777.1|954331_954631_+	DUF2951 domain-containing protein	NA	A0A0F6N3M6	Staphylococcus_phage	100.0	9.9e-47
WP_050961200.1|954767_956666_+	glucosaminidase domain-containing protein	NA	A1KX46	Staphylococcus_virus	98.9	0.0e+00
WP_031890881.1|956678_957917_+|plate	BppU family phage baseplate upper protein	plate	A0A0F6N3G7	Staphylococcus_phage	96.6	3.3e-205
957016:957035	attR	CAAACTTTTCTTTCAATATC	NA	NA	NA	NA
WP_031890882.1|957922_958318_+	hypothetical protein	NA	A0A0E3XBL9	Staphylococcus_phage	99.2	6.1e-68
WP_000354119.1|958373_958811_+|holin	phage holin	holin	A0EWV0	Staphylococcus_virus	100.0	1.1e-73
WP_050961201.1|958791_960237_+	SH3 domain-containing protein	NA	Q4ZB16	Staphylococcus_virus	98.3	7.2e-292
>prophage 4
NZ_CP014423	Staphylococcus aureus strain USA300-SUR17 chromosome, complete genome	2919826	1116982	1125455	2919826		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|1116982_1117465_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010412.1|1117451_1118576_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|1118579_1119284_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000848350.1|1119283_1119547_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666799.1|1119548_1120220_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032727.1|1120212_1122402_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
WP_000483713.1|1122380_1123865_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000030812.1|1123857_1124886_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
WP_000238664.1|1124888_1125455_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 5
NZ_CP014423	Staphylococcus aureus strain USA300-SUR17 chromosome, complete genome	2919826	1567223	1652759	2919826	head,protease,capsid,plate,tail,integrase,terminase,tRNA,holin,portal	Staphylococcus_phage(84.21%)	106	1603586:1603606	1652764:1652784
WP_000858789.1|1567223_1568516_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	1.9e-54
WP_000525078.1|1568837_1571531_-	ATP-dependent helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_000049919.1|1571554_1572526_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000361544.1|1572512_1573715_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	42.5	3.2e-35
WP_000690027.1|1573719_1574862_-	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA	NA
WP_000839926.1|1575102_1575420_-	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_001827022.1|1575756_1576437_-	zinc metallopeptidase	NA	NA	NA	NA	NA
WP_000152734.1|1576508_1577096_-	DUF1405 domain-containing protein	NA	NA	NA	NA	NA
WP_000004947.1|1577085_1577661_-	YpiB family protein	NA	G3MAV7	Bacillus_virus	27.2	2.7e-08
WP_000389524.1|1577674_1578919_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000245895.1|1578925_1580224_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_000776323.1|1580233_1581298_-	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_001269929.1|1581323_1582490_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.1	7.6e-34
WP_000789522.1|1582875_1583076_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000442480.1|1583284_1583734_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_001096471.1|1583825_1584785_-	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_077467087.1|1584786_1585512_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_000450553.1|1585514_1586087_-	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_001043863.1|1586517_1586790_-	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000161738.1|1586960_1587959_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000165536.1|1587975_1589286_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_000133954.1|1589507_1590683_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_001789944.1|1590939_1591131_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001789945.1|1591247_1591364_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000644391.1|1591394_1592054_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_000681756.1|1592130_1593099_+	asparaginase	NA	NA	NA	NA	NA
WP_001174260.1|1593213_1594200_-	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA	NA
WP_001789943.1|1594360_1594477_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000069282.1|1594601_1596062_-	elastin-binding protein EbpS	NA	NA	NA	NA	NA
WP_000902119.1|1596214_1597594_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.6	2.9e-56
WP_001163801.1|1597583_1598537_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_001151997.1|1598644_1598893_+	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
WP_001186912.1|1598998_1599544_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_001789947.1|1599822_1599942_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000913219.1|1600140_1601055_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001033757.1|1601069_1601276_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000472936.1|1601268_1602207_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000476873.1|1602263_1603181_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000470336.1|1603271_1603457_-	hypothetical protein	NA	A0ZS61	Staphylococcus_virus	100.0	1.7e-25
1603586:1603606	attL	AATCCGCCCTTTTTTTGCCCT	NA	NA	NA	NA
WP_024937002.1|1603705_1604689_-	Panton-Valentine bi-component leukocidin subunit F	NA	A0A2I6PEU3	Staphylococcus_phage	100.0	4.0e-185
WP_000239545.1|1604684_1605623_-	Panton-Valentine bi-component leukocidin subunit S	NA	A0A2I6PER8	Staphylococcus_phage	100.0	3.7e-180
WP_000909220.1|1606012_1607467_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2I6PET7	Staphylococcus_phage	100.0	5.7e-289
WP_000339146.1|1607477_1607780_-|holin	phage holin	holin	A0A2I6PET6	Staphylococcus_phage	100.0	7.0e-48
WP_000466784.1|1607915_1608215_-	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_000868795.1|1608534_1609032_+	trimethoprim-resistant dihydrofolate reductase DfrG	NA	G3MBI7	Bacillus_virus	49.1	4.0e-40
WP_000163792.1|1609103_1611056_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001159903.1|1611062_1611299_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000916020.1|1611545_1611710_-	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_001166599.1|1611702_1612092_-	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_000067127.1|1612091_1613558_-|plate	phage baseplate upper protein	plate	A0A2I6PES7	Staphylococcus_phage	100.0	1.5e-273
WP_000429558.1|1613557_1615468_-	minor structural protein	NA	A0A2I6PEQ9	Staphylococcus_phage	100.0	0.0e+00
WP_000179858.1|1615483_1615774_-	hypothetical protein	NA	U5U457	Staphylococcus_phage	100.0	2.1e-49
WP_000384474.1|1615773_1617357_-|tail	phage tail protein	tail	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
WP_001190533.1|1617365_1618190_-|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_001003408.1|1618189_1624390_-|tail	phage tail tape measure protein	tail	A0A1X9IGU9	Staphylococcus_phage	99.7	0.0e+00
WP_000438833.1|1624403_1624562_-	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_000589167.1|1624603_1624954_-	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
WP_000169127.1|1625011_1625467_-	Ig domain-containing protein	NA	A0A2I6PER6	Staphylococcus_phage	100.0	5.7e-78
WP_000807536.1|1625558_1626200_-|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
WP_001023806.1|1626234_1626630_-	DUF3168 domain-containing protein	NA	A0A2I6PEQ4	Staphylococcus_phage	100.0	8.8e-67
WP_000110023.1|1626630_1627032_-	hypothetical protein	NA	A0A2I6PF54	Staphylococcus_phage	100.0	8.1e-68
WP_000395498.1|1627028_1627361_-	hypothetical protein	NA	A0A2I6PES3	Staphylococcus_phage	100.0	4.1e-57
WP_000050973.1|1627372_1627651_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_001142734.1|1627719_1628883_-|capsid	phage major capsid protein	capsid	A0A2I6PEQ3	Staphylococcus_phage	100.0	1.2e-217
WP_000061866.1|1628894_1629668_-|protease	Clp protease ClpP	protease	A0A2I6PEQ7	Staphylococcus_phage	100.0	2.4e-137
WP_001100664.1|1629651_1630890_-|portal	phage portal protein	portal	A0A2I6PER5	Staphylococcus_phage	100.0	6.9e-235
WP_000153540.1|1630894_1632586_-|terminase	terminase large subunit	terminase	A0A1X9IGU0	Staphylococcus_phage	100.0	0.0e+00
WP_000778933.1|1632575_1632881_-|terminase	P27 family phage terminase small subunit	terminase	A0A2I6PEQ6	Staphylococcus_phage	100.0	2.9e-49
WP_000160686.1|1633007_1633322_-	HNH endonuclease	NA	A0A2I6PEN4	Staphylococcus_phage	100.0	5.0e-57
WP_000528512.1|1633478_1633916_-	transcriptional regulator	NA	A0A2I6PEN3	Staphylococcus_phage	100.0	7.9e-77
WP_001801648.1|1633928_1635296_-	DEAD/DEAH box helicase	NA	A0A2I6PE95	Staphylococcus_phage	99.8	3.0e-263
WP_001548892.1|1635276_1635567_-	VRR-NUC domain-containing protein	NA	A0A2I6PE31	Staphylococcus_phage	100.0	6.5e-51
WP_001801650.1|1635700_1635799_+	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	100.0	3.7e-11
WP_000884870.1|1635907_1638355_-	virulence-associated E family protein	NA	A0A2I6PEP4	Staphylococcus_phage	100.0	0.0e+00
WP_000265252.1|1638642_1638843_-	DUF1514 family protein	NA	A0A2I6PEP5	Staphylococcus_phage	100.0	4.9e-26
WP_000595263.1|1638910_1639063_-	transcriptional activator RinB	NA	A0A2I6PEM5	Staphylococcus_phage	100.0	2.0e-19
WP_000592202.1|1639059_1639446_-	hypothetical protein	NA	A0A1X9IGZ2	Staphylococcus_phage	100.0	3.0e-64
WP_000608275.1|1639438_1639675_-	hypothetical protein	NA	A0A2I6PEM4	Staphylococcus_phage	100.0	2.8e-36
WP_000141180.1|1639667_1639871_-	hypothetical protein	NA	A0A2I6PEQ8	Staphylococcus_phage	100.0	3.4e-30
WP_000195794.1|1639867_1640074_-	DUF1381 domain-containing protein	NA	A0A2I6PEM9	Staphylococcus_phage	100.0	1.6e-19
WP_000185671.1|1640110_1640647_-	dUTP diphosphatase	NA	A0A2I6PEN6	Staphylococcus_phage	100.0	1.6e-95
WP_001065039.1|1640639_1640888_-	DUF1024 family protein	NA	A0A2I6PEP2	Staphylococcus_phage	100.0	1.4e-38
WP_000132194.1|1640902_1641145_-	hypothetical protein	NA	A0A2I6PEV3	Staphylococcus_phage	100.0	1.5e-40
WP_000235324.1|1641159_1641360_-	hypothetical protein	NA	A0A2I6PEM3	Staphylococcus_phage	100.0	2.5e-30
WP_000022728.1|1641362_1641620_-	DUF3310 domain-containing protein	NA	A0A2I6PEN5	Staphylococcus_phage	100.0	2.6e-43
WP_000113974.1|1641619_1642021_-	PVL family protein	NA	A0A2I6PEL5	Staphylococcus_phage	100.0	1.2e-68
WP_001164629.1|1642020_1642206_-	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
WP_001801657.1|1642218_1644171_-	DNA polymerase	NA	A0A2I6PEL4	Staphylococcus_phage	100.0	0.0e+00
WP_000645048.1|1644238_1644796_-	DUF2815 family protein	NA	A0A2I6PEP8	Staphylococcus_phage	100.0	1.8e-97
WP_000762552.1|1644821_1645988_-	DUF2800 domain-containing protein	NA	A0A2I6PEL9	Staphylococcus_phage	100.0	1.4e-221
WP_000985979.1|1645984_1646347_-	hypothetical protein	NA	A0A2I6PEM7	Staphylococcus_phage	100.0	3.7e-56
WP_000291481.1|1646360_1646621_-	DUF1108 family protein	NA	A0A2I6PEM2	Staphylococcus_phage	100.0	3.4e-43
WP_000163431.1|1646625_1646928_-	DUF2482 family protein	NA	A0A1X9IGX2	Staphylococcus_phage	100.0	2.4e-48
WP_000829612.1|1646920_1647238_-	hypothetical protein	NA	A0A2I6PEL3	Staphylococcus_phage	100.0	1.1e-35
WP_001124198.1|1647503_1647767_-	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
WP_001036299.1|1647791_1648007_-	hypothetical protein	NA	A0A2I6PEK7	Staphylococcus_phage	100.0	1.0e-32
WP_001548903.1|1648053_1648293_+	hypothetical protein	NA	A0A2I6PE22	Staphylococcus_phage	100.0	6.7e-38
WP_001001356.1|1648289_1648466_-	hypothetical protein	NA	A0A2I6PEL1	Staphylococcus_phage	100.0	8.8e-27
WP_001115060.1|1648549_1648741_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PEL6	Staphylococcus_phage	100.0	2.3e-28
WP_000429766.1|1648901_1649231_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PEN2	Staphylococcus_phage	100.0	3.2e-54
WP_000525001.1|1649243_1649705_+	hypothetical protein	NA	A0A2I6PEK4	Staphylococcus_phage	98.7	2.9e-85
WP_000755722.1|1649722_1650157_+	hypothetical protein	NA	A0A2I6PEM0	Staphylococcus_phage	96.5	3.6e-21
WP_000449655.1|1650185_1650581_+	hypothetical protein	NA	A0A2I6PEJ7	Staphylococcus_phage	100.0	3.8e-70
WP_001795334.1|1650670_1650817_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	100.0	1.2e-16
WP_000191466.1|1650813_1651428_-	hypothetical protein	NA	A0A2I6PEZ0	Staphylococcus_phage	100.0	6.7e-106
WP_000264751.1|1651553_1652759_+|integrase	site-specific integrase	integrase	A0A2I6PEN0	Staphylococcus_phage	100.0	7.7e-223
1652764:1652784	attR	AATCCGCCCTTTTTTTGCCCT	NA	NA	NA	NA
>prophage 6
NZ_CP014423	Staphylococcus aureus strain USA300-SUR17 chromosome, complete genome	2919826	1713577	1721889	2919826	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1713577_1714363_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924214.1|1714488_1715379_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062180.1|1715388_1716735_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	5.3e-55
WP_000683931.1|1716848_1717949_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_000624584.1|1717951_1718629_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1718759_1719866_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217261.1|1720089_1721889_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	4.6e-54
>prophage 7
NZ_CP014423	Staphylococcus aureus strain USA300-SUR17 chromosome, complete genome	2919826	1791026	1800069	2919826	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1791026_1791545_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000594993.1|1791566_1793840_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
WP_000749795.1|1794042_1796322_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1796596_1796857_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1796875_1798015_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019172.1|1798037_1799063_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005767.1|1799064_1800069_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 8
NZ_CP014423	Staphylococcus aureus strain USA300-SUR17 chromosome, complete genome	2919826	1925530	2004862	2919826	transposase,tRNA,protease	Staphylococcus_phage(94.83%)	74	NA	NA
WP_001050549.1|1925530_1932091_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	98.1	2.0e-304
WP_000836465.1|1932416_1932728_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
WP_001549041.1|1932749_1935167_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.2	0.0e+00
WP_001025061.1|1935454_1936636_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_000526539.1|1936745_1937699_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|1937695_1938259_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|1938378_1938780_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1940358_1941186_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1941188_1941308_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|1941419_1942421_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008551.1|1942542_1943007_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001159022.1|1943019_1944201_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
WP_000493892.1|1944211_1944844_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_000077344.1|1944850_1945894_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	6.3e-197
WP_001261677.1|1946374_1947877_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000221179.1|1948399_1948714_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
WP_000989121.1|1948713_1950006_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_000163235.1|1950023_1950419_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
WP_001032833.1|1950713_1951568_-	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1951843_1952068_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671052.1|1952266_1952737_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
WP_001153742.1|1952849_1953293_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030465.1|1953279_1953723_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	85.0	3.0e-55
WP_001168904.1|1954018_1954654_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096459.1|1955093_1955807_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091445.1|1956066_1956369_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200541.1|1956624_1956990_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	99.2	1.4e-58
WP_000623471.1|1956986_1957340_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_000453320.1|1959422_1960256_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.6	9.6e-156
WP_000366154.1|1960467_1961376_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	3.2e-136
WP_000933822.1|1961500_1962694_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109906.1|1963064_1964657_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_000639100.1|1964792_1965194_-|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	36.3	5.7e-13
WP_002868962.1|1965652_1966399_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.4	7.1e-142
WP_000672014.1|1966403_1966877_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
WP_000718107.1|1966942_1967200_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778523.1|1967196_1968198_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	4.8e-186
WP_000348360.1|1968202_1969681_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	2.0e-281
WP_011443643.1|1969839_1970295_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	3.0e-79
WP_001795535.1|1970597_1971248_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	2.7e-44
WP_000070653.1|1971328_1972324_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	96.4	7.1e-73
WP_000627551.1|1973066_1973411_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	6.3e-53
WP_000414205.1|1973508_1974060_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.1	1.0e-20
WP_000494956.1|1974277_1974919_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	93.2	2.6e-76
WP_000809857.1|1975032_1975218_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000375476.1|1975219_1975396_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000070811.1|1975406_1975790_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001549059.1|1976393_1976537_-|transposase	transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	100.0	6.4e-20
WP_001801861.1|1976739_1976835_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001791893.1|1976957_1977059_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001037045.1|1977406_1977784_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000831218.1|1978304_1982417_-	ATP-binding protein	NA	A0A2H4PQT3	Staphylococcus_phage	100.0	0.0e+00
WP_000072576.1|1983266_1984466_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	99.7	5.5e-229
WP_000028659.1|1984458_1986015_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.4	2.3e-288
WP_001791797.1|1986178_1986313_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038688.1|1986377_1987097_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	100.0	1.1e-131
WP_001038759.1|1987247_1987964_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	100.0	1.1e-131
WP_011447030.1|1988065_1988173_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038704.1|1988121_1988841_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
WP_001038867.1|1988961_1989681_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	99.2	1.2e-130
WP_001039447.1|1989738_1990461_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	2.4e-131
WP_001039435.1|1990585_1991293_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	100.0	2.6e-130
WP_001092763.1|1992256_1992823_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	100.0	3.3e-99
WP_000586140.1|1993296_1993995_-	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
WP_000581552.1|1993991_1994753_-	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	100.0	4.4e-131
WP_001096791.1|1994749_1995442_-	lantibiotic protection ABC transporter ATP-binding subunit	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
WP_000691541.1|1995464_1996838_-	S8 family serine peptidase	NA	A0A2H4PQH1	Staphylococcus_phage	100.0	2.9e-258
WP_000504439.1|1996847_1997366_-	flavoprotein	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
WP_000566596.1|1997381_1998626_-	lanthionine synthetase C family protein	NA	A0A2H4PQH9	Staphylococcus_phage	100.0	5.1e-238
WP_001092605.1|1998618_2001612_-	lantibiotic dehydratase	NA	A0A2H4PQG8	Staphylococcus_phage	97.3	0.0e+00
WP_000416756.1|2001676_2001820_-	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
WP_000416759.1|2002556_2002700_-	gallidermin/nisin family lantibiotic	NA	NA	NA	NA	NA
WP_000782464.1|2002941_2003925_-	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.1	2.3e-185
WP_000473596.1|2003926_2004862_-	bi-component leukocidin LukED subunit E	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
>prophage 9
NZ_CP014423	Staphylococcus aureus strain USA300-SUR17 chromosome, complete genome	2919826	2089930	2186365	2919826	head,protease,capsid,tail,integrase,terminase,tRNA,holin,portal	Staphylococcus_phage(91.03%)	117	2151356:2151373	2176287:2176304
WP_000027928.1|2089930_2091388_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_000170162.1|2091389_2091692_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_000957015.1|2092058_2093597_+	sodium/proline symporter PutP	NA	NA	NA	NA	NA
WP_000831698.1|2093685_2094885_-	CamS family sex pheromone protein	NA	NA	NA	NA	NA
WP_000774565.1|2094897_2096901_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.1	5.8e-114
WP_000992921.1|2096904_2099097_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000272069.1|2099093_2099786_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_001165363.1|2099957_2100260_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000572878.1|2100368_2101664_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_000827748.1|2102524_2103691_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434933.1|2103721_2104048_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669862.1|2104339_2104513_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011538.1|2104493_2105096_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040873.1|2105366_2106188_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	1.8e-69
WP_000284431.1|2106180_2107650_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	4.5e-108
WP_000897635.1|2107833_2108910_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177817.1|2108929_2109724_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|2109795_2109903_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323167.1|2109913_2111476_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275730.1|2111680_2112778_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	1.9e-47
WP_000149686.1|2113149_2113710_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|2113762_2114692_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001790680.1|2114886_2115060_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021214.1|2115111_2116491_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181322.1|2116610_2117639_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000205106.1|2117908_2118310_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000267034.1|2118882_2119056_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188077.1|2119506_2120547_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713072.1|2120603_2121446_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033971.1|2121442_2122000_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966288.1|2122059_2122584_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|2122704_2123268_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221651.1|2123333_2124074_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763048.1|2124073_2124946_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_000645727.1|2124942_2125623_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991302.1|2125623_2126520_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000691584.1|2126516_2126897_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681968.1|2127160_2127337_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|2127579_2127678_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068542.1|2127877_2129164_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_050961220.1|2129788_2131543_-	extracellular adherence protein Eap/Map	NA	NA	NA	NA	NA
WP_000669789.1|2132500_2132680_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001791826.1|2132990_2133251_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702263.1|2133303_2133654_-	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_000727649.1|2134338_2134788_+	chemotaxis-inhibiting protein CHIPS	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
WP_000919350.1|2135867_2136359_-	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
WP_000861038.1|2136549_2137305_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611512.1|2137316_2137571_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_001791821.1|2137622_2137730_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011447039.1|2137782_2137959_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_000539688.1|2138108_2138405_-	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_001040261.1|2138462_2138750_-	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_001153681.1|2138796_2138949_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_000582165.1|2138938_2142724_-	hypothetical protein	NA	A0A1X9H0H3	Staphylococcus_phage	98.5	0.0e+00
WP_000567394.1|2142739_2144224_-|tail	phage tail family protein	tail	A0A0H3U501	Staphylococcus_phage	100.0	2.0e-297
WP_001549166.1|2144220_2148750_-|tail	phage tail tape measure protein	tail	A0A1X9H084	Staphylococcus_phage	95.0	0.0e+00
WP_001549167.1|2148806_2148944_-	hypothetical protein	NA	A0A2I6PDX7	Staphylococcus_phage	100.0	3.4e-18
WP_001096354.1|2148994_2149345_-	hypothetical protein	NA	A0A0H3U503	Staphylococcus_phage	100.0	1.3e-58
WP_094969769.1|2149394_2149634_-	Ig-like domain-containing protein	NA	A0A075LYE8	Staphylococcus_phage	94.6	4.0e-30
WP_000260578.1|2149660_2150305_-|tail	phage tail protein	tail	A0A0H3U4E6	Staphylococcus_phage	100.0	6.5e-120
WP_000565500.1|2150308_2150713_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	95.5	1.4e-67
WP_000114229.1|2150709_2151114_-	HK97 gp10 family phage protein	NA	A0A0H3U2V1	Staphylococcus_phage	100.0	8.7e-70
WP_000755150.1|2151110_2151473_-|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
2151356:2151373	attL	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
WP_000150936.1|2151456_2151741_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000238236.1|2151730_2152015_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000154559.1|2152034_2153180_-|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
WP_000642728.1|2153203_2153941_-|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000025274.1|2153924_2155112_-|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000625088.1|2155127_2156789_-|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_000402904.1|2156785_2157130_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000988336.1|2157259_2157559_-	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
WP_000590122.1|2157790_2158207_-	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000265043.1|2158234_2158435_-	DUF1514 family protein	NA	A0A2I6PDV9	Staphylococcus_phage	100.0	1.4e-28
WP_000595265.1|2158434_2158584_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_000592207.1|2158580_2158967_-	hypothetical protein	NA	W5R986	Staphylococcus_phage	100.0	3.0e-64
WP_000195803.1|2158963_2159170_-	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
WP_001282074.1|2159166_2159412_-	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
WP_000181819.1|2159448_2159982_-	dUTP pyrophosphatase	NA	A0A0H3U2T1	Staphylococcus_phage	100.0	1.6e-95
WP_000700108.1|2159974_2160217_-	hypothetical protein	NA	A0A2I6PF40	Staphylococcus_phage	100.0	3.7e-36
WP_001065101.1|2160206_2160443_-	DUF1024 family protein	NA	A0A0H3U313	Staphylococcus_phage	100.0	5.3e-35
WP_001549172.1|2160435_2160807_-	hypothetical protein	NA	A0A0H3U4X7	Staphylococcus_phage	97.3	4.7e-54
WP_000131383.1|2160815_2161058_-	hypothetical protein	NA	A0A0H3U4B0	Staphylococcus_phage	100.0	1.1e-40
WP_000101288.1|2161061_2161430_-	hypothetical protein	NA	A0A0H3U2T3	Staphylococcus_phage	100.0	2.0e-49
WP_000401977.1|2161442_2161847_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A0H3U2W2	Staphylococcus_phage	100.0	1.4e-72
WP_000338530.1|2161855_2162074_-	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
WP_000148333.1|2162080_2162974_-	DnaD domain-containing protein	NA	A0A1P8L6F0	Staphylococcus_phage	100.0	3.2e-141
WP_050961221.1|2163003_2163474_-	single-stranded DNA-binding protein	NA	A0A0H3U4B5	Staphylococcus_phage	99.4	2.8e-80
WP_071665632.1|2163474_2164092_-	MBL fold metallo-hydrolase	NA	A0A0H3U2T4	Staphylococcus_phage	100.0	4.1e-87
WP_000138475.1|2164172_2165093_-	recombinase RecT	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_000700561.1|2165094_2167038_-	AAA family ATPase	NA	A0A2I6PDH3	Staphylococcus_phage	94.7	0.0e+00
WP_001205732.1|2167046_2167310_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000291513.1|2167318_2167579_-	DUF1108 family protein	NA	A0A0H3U2T6	Staphylococcus_phage	100.0	6.8e-44
WP_001549178.1|2167618_2167879_-	DUF2482 family protein	NA	A0A0H3U2W4	Staphylococcus_phage	100.0	9.3e-41
WP_001285960.1|2167973_2168135_-	DUF1270 domain-containing protein	NA	A0A0H3U4Y7	Staphylococcus_phage	100.0	3.8e-21
WP_001120199.1|2168131_2168452_-	DUF771 domain-containing protein	NA	A0A0H3U4C3	Staphylococcus_phage	100.0	1.5e-56
WP_000549548.1|2168510_2168741_+	hypothetical protein	NA	A0A0H3U2T9	Staphylococcus_phage	100.0	9.4e-37
WP_001001356.1|2168737_2168914_-	hypothetical protein	NA	A0A2I6PEL1	Staphylococcus_phage	100.0	8.8e-27
WP_001148642.1|2168929_2169682_-	phage antirepressor KilAC domain-containing protein	NA	A0A0H3U319	Staphylococcus_phage	100.0	5.6e-139
WP_000180411.1|2169732_2170062_+	hypothetical protein	NA	A0A0H3U4Z1	Staphylococcus_phage	100.0	4.6e-53
WP_001025404.1|2170050_2170266_-	DUF2829 domain-containing protein	NA	A0A0H3U4C7	Staphylococcus_phage	100.0	4.8e-35
WP_000854072.1|2170281_2170545_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	100.0	7.2e-41
WP_001801500.1|2170541_2170715_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001031454.1|2170677_2171391_+	helix-turn-helix transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
WP_000759682.1|2171406_2172339_+	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
WP_000591749.1|2172344_2172686_+	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
WP_000705246.1|2172889_2173072_+	hypothetical protein	NA	A0A0H3U4Z4	Staphylococcus_phage	100.0	4.1e-27
WP_001549185.1|2173149_2173863_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	A0A1X9H026	Staphylococcus_phage	100.0	5.0e-129
WP_000857199.1|2174053_2175091_+|integrase	site-specific integrase	integrase	A0A1X9H022	Staphylococcus_phage	99.7	3.8e-178
WP_000595324.1|2176209_2177226_-	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.0	1.1e-25
2176287:2176304	attR	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
WP_000791407.1|2177247_2178303_-	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
WP_000206639.1|2178737_2179961_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_000812010.1|2180332_2181178_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000825510.1|2181239_2182151_-	iron-hydroxamate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001045079.1|2182311_2183619_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000022887.1|2184471_2184915_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001797573.1|2185079_2185457_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001293058.1|2185774_2186365_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	95.8	1.1e-97
>prophage 1
NZ_CP014425	Staphylococcus aureus strain USA300-SUR17 plasmid pUSA04-1-SUR17, complete sequence	27068	0	11744	27068	transposase	Streptococcus_phage(50.0%)	12	NA	NA
WP_000627289.1|1237_1768_+	streptothricin N-acetyltransferase Sat4	NA	A0A1B0RXL7	Streptococcus_phage	97.8	1.3e-89
WP_001096887.1|1860_2655_+	aminoglycoside O-phosphotransferase APH(3')-IIIa	NA	E4ZFP6	Streptococcus_phage	100.0	2.3e-154
WP_001105991.1|3670_4345_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9SKD3	Staphylococcus_phage	99.6	6.8e-128
WP_001037130.1|4606_4792_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000690637.1|5014_5593_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.7	4.9e-42
WP_000182645.1|5856_6237_-	penicillinase repressor BlaI	NA	NA	NA	NA	NA
WP_001096381.1|6226_7984_-	beta-lactam sensor/signal transducer BlaR1	NA	NA	NA	NA	NA
WP_000733287.1|8090_8936_+	penicillin-hydrolyzing class A beta-lactamase BlaZ	NA	A0A1B0VBP7	Salmonella_phage	34.0	5.7e-31
WP_000418035.1|9461_9881_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000481279.1|10004_10976_+	oxidoreductase	NA	NA	NA	NA	NA
WP_001791613.1|11147_11240_-	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_000119690.1|11396_11744_-	helix-turn-helix transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	36.8	4.9e-13
>prophage 2
NZ_CP014425	Staphylococcus aureus strain USA300-SUR17 plasmid pUSA04-1-SUR17, complete sequence	27068	18043	25882	27068	transposase	Staphylococcus_phage(40.0%)	7	NA	NA
WP_000797248.1|18043_18229_-	helix-turn-helix transcriptional regulator	NA	A0A142LP09	Marinitoga_camini_virus	37.9	9.9e-05
WP_001049146.1|18233_18572_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000583528.1|18817_19426_-	recombinase family protein	NA	G8I4U3	Mycobacterium_phage	30.2	1.0e-13
WP_000196697.1|19911_20811_-	Mph(C) family macrolide 2'-phosphotransferase	NA	NA	NA	NA	NA
WP_000438874.1|20909_22376_-	ABC-F type ribosomal protection protein Msr(A)	NA	A0A2I4R674	Erysipelothrix_phage	37.7	6.6e-67
WP_001105960.1|22849_23524_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	97.3	1.7e-126
WP_000793446.1|24952_25882_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	42.2	1.0e-41
