bac_id	bac_def	spacer_id	hit_contig_id	hit_contig_def	identity	alignment_length	mismatch	gapopen	query_start	query_end	hit_start	hit_end	crispr_array_of_hit_genome	evalue	bitscore	coverage	spacer_sequence	hit_contig_region	hit_contig_sequence	hmm_mismatch
NZ_CP014415	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	3.1|848391|26|NZ_CP014415|CRISPRCasFinder	NZ_CP014415.1	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	96.15	26	1	0	1	26	811353	811328	433395-433495|672550-672642|848361-848446|891690-891771|998087-998369|1131759-1131846|2077077-2077155|2312141-2312291|2436059-2436252	1e-05	39.6	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	811328-811353	CGGGGCCCCAACACAGAAGCAGGCGG	1
NZ_CP014415	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	3.1|848391|26|NZ_CP014415|CRISPRCasFinder	NZ_CP014415.1	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	96.15	26	1	0	1	26	2877376	2877401	433395-433495|672550-672642|848361-848446|891690-891771|998087-998369|1131759-1131846|2077077-2077155|2312141-2312291|2436059-2436252	1e-05	39.6	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	2877376-2877401	CCGCCAGCTTCTATGTTGGGGCCCCG	1
NZ_CP014415	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	3.1|848391|26|NZ_CP014415|CRISPRCasFinder	NZ_CP014415.1	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	96.15	26	1	0	1	26	2877432	2877457	433395-433495|672550-672642|848361-848446|891690-891771|998087-998369|1131759-1131846|2077077-2077155|2312141-2312291|2436059-2436252	1e-05	39.6	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	2877432-2877457	CCGCCAGCTTCTTTGTTGGGGCCCCG	1
NZ_CP014415	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	3.1|848391|26|NZ_CP014415|CRISPRCasFinder	NZ_CP014415.1	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	92.31	26	2	0	1	26	811409	811384	433395-433495|672550-672642|848361-848446|891690-891771|998087-998369|1131759-1131846|2077077-2077155|2312141-2312291|2436059-2436252	1e-04	36.5	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	811384-811409	CGGGGCCCCAACATAGAAGCAGGCGG	2
NZ_CP014415	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	3.1|848391|26|NZ_CP014415|CRISPRCasFinder	NZ_CP014415.1	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	92.31	26	2	0	1	26	998086	998061	433395-433495|672550-672642|848361-848446|891690-891771|998087-998369|1131759-1131846|2077077-2077155|2312141-2312291|2436059-2436252	1e-04	36.5	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	998061-998086	CGGGGCCCCAACACAGAGGCTGGTGG	2
NZ_CP014415	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	4.1|891714|34|NZ_CP014415|CRISPRCasFinder	NZ_CP014415.1	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	100.00	34	0	0	1	34	1424292	1424259	433395-433495|672550-672642|848361-848446|891690-891771|998087-998369|1131759-1131846|2077077-2077155|2312141-2312291|2436059-2436252	5e-10	55.5	1.0	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	1424259-1424292	ATGGGCCCCAACAAAGAGAAATTGGATTCCCAAT	0
NZ_CP014415	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	4.1|891714|34|NZ_CP014415|CRISPRCasFinder	NZ_CP014415.1	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	100.00	34	0	0	1	34	1513451	1513484	433395-433495|672550-672642|848361-848446|891690-891771|998087-998369|1131759-1131846|2077077-2077155|2312141-2312291|2436059-2436252	5e-10	55.5	1.0	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	1513451-1513484	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	0
NZ_CP014415	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	5.1|998117|26|NZ_CP014415|CRT	NZ_CP014415.1	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	96.15	26	1	0	1	26	998061	998086	433395-433495|672550-672642|848361-848446|891690-891771|998087-998369|1131759-1131846|2077077-2077155|2312141-2312291|2436059-2436252	1e-05	39.6	1.0	CGGGGCCCCAACACAGAGGCTGGCGG	998061-998086	CGGGGCCCCAACACAGAGGCTGGTGG	1
NZ_CP014415	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	5.1|998117|26|NZ_CP014415|CRT	NZ_CP014415.1	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	92.31	26	2	0	1	26	811328	811353	433395-433495|672550-672642|848361-848446|891690-891771|998087-998369|1131759-1131846|2077077-2077155|2312141-2312291|2436059-2436252	1e-04	36.5	1.0	CGGGGCCCCAACACAGAGGCTGGCGG	811328-811353	CGGGGCCCCAACACAGAAGCAGGCGG	2
NZ_CP014415	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	5.1|998117|26|NZ_CP014415|CRT	NZ_CP014415.1	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	92.31	26	2	0	1	26	2877401	2877376	433395-433495|672550-672642|848361-848446|891690-891771|998087-998369|1131759-1131846|2077077-2077155|2312141-2312291|2436059-2436252	1e-04	36.5	1.0	CGGGGCCCCAACACAGAGGCTGGCGG	2877376-2877401	CCGCCAGCTTCTATGTTGGGGCCCCG	2
NZ_CP014415	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	5.1|998117|26|NZ_CP014415|CRT	NZ_CP014415.1	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	92.31	26	2	0	1	26	2877457	2877432	433395-433495|672550-672642|848361-848446|891690-891771|998087-998369|1131759-1131846|2077077-2077155|2312141-2312291|2436059-2436252	1e-04	36.5	1.0	CGGGGCCCCAACACAGAGGCTGGCGG	2877432-2877457	CCGCCAGCTTCTTTGTTGGGGCCCCG	2
NZ_CP014415	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	5.3|998231|26|NZ_CP014415|CRT	NZ_CP014415.1	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	96.15	26	1	0	1	26	848472	848447	433395-433495|672550-672642|848361-848446|891690-891771|998087-998369|1131759-1131846|2077077-2077155|2312141-2312291|2436059-2436252	1e-05	39.6	1.0	CGGGGCCCCAACACAGAAGCTGGCGA	848447-848472	TCGTCAGCTTCTGTGTTGGGGCCCCG	1
NZ_CP014415	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	5.3|998231|26|NZ_CP014415|CRT	NZ_CP014415.1	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	92.31	26	2	0	1	26	394728	394753	433395-433495|672550-672642|848361-848446|891690-891771|998087-998369|1131759-1131846|2077077-2077155|2312141-2312291|2436059-2436252	1e-04	36.5	1.0	CGGGGCCCCAACACAGAAGCTGGCGA	394728-394753	CGGGGCCCCAACAAAGAAGCTGACGA	2
NZ_CP014415	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	7.1|2077100|33|NZ_CP014415|CRISPRCasFinder	NZ_CP014415.1	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	96.97	33	1	0	1	33	848427	848459	433395-433495|672550-672642|848361-848446|891690-891771|998087-998369|1131759-1131846|2077077-2077155|2312141-2312291|2436059-2436252	1e-08	50.7	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	848427-848459	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	1
NZ_CP014415	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	7.1|2077100|33|NZ_CP014415|CRISPRCasFinder	NZ_CP014415.1	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	96.97	33	1	0	1	33	1216122	1216090	433395-433495|672550-672642|848361-848446|891690-891771|998087-998369|1131759-1131846|2077077-2077155|2312141-2312291|2436059-2436252	1e-08	50.7	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	1216090-1216122	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	1
NZ_CP014415	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	7.1|2077100|33|NZ_CP014415|CRISPRCasFinder	NZ_CP014415.1	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	96.97	33	1	0	1	33	1424246	1424214	433395-433495|672550-672642|848361-848446|891690-891771|998087-998369|1131759-1131846|2077077-2077155|2312141-2312291|2436059-2436252	1e-08	50.7	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	1424214-1424246	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	1
NZ_CP014415	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	7.1|2077100|33|NZ_CP014415|CRISPRCasFinder	NZ_CP014415.1	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	96.97	33	1	0	1	33	1742015	1742047	433395-433495|672550-672642|848361-848446|891690-891771|998087-998369|1131759-1131846|2077077-2077155|2312141-2312291|2436059-2436252	1e-08	50.7	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	1742015-1742047	CATTATAGTAAGCTGACTTTTCGTCAGCTTCTG	1
NZ_CP014415	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	7.1|2077100|33|NZ_CP014415|CRISPRCasFinder	NZ_CP014415.1	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	96.97	33	1	0	1	33	2712019	2712051	433395-433495|672550-672642|848361-848446|891690-891771|998087-998369|1131759-1131846|2077077-2077155|2312141-2312291|2436059-2436252	1e-08	50.7	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	2712019-2712051	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	1
NZ_CP014415	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	7.1|2077100|33|NZ_CP014415|CRISPRCasFinder	NZ_CP014415.1	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	93.94	33	2	0	1	33	1513497	1513529	433395-433495|672550-672642|848361-848446|891690-891771|998087-998369|1131759-1131846|2077077-2077155|2312141-2312291|2436059-2436252	1e-07	47.5	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	1513497-1513529	CATTATTGTAAGCTGACTTTTCGTCATCTTCTG	2
NZ_CP014415	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	9.1|2436082|33|NZ_CP014415|CRT	NZ_CP014415.1	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	93.94	33	2	0	1	33	848427	848459	433395-433495|672550-672642|848361-848446|891690-891771|998087-998369|1131759-1131846|2077077-2077155|2312141-2312291|2436059-2436252	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	848427-848459	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
NZ_CP014415	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	9.1|2436082|33|NZ_CP014415|CRT	NZ_CP014415.1	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	93.94	33	2	0	1	33	1216122	1216090	433395-433495|672550-672642|848361-848446|891690-891771|998087-998369|1131759-1131846|2077077-2077155|2312141-2312291|2436059-2436252	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	1216090-1216122	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
NZ_CP014415	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	9.1|2436082|33|NZ_CP014415|CRT	NZ_CP014415.1	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	93.94	33	2	0	1	33	1424246	1424214	433395-433495|672550-672642|848361-848446|891690-891771|998087-998369|1131759-1131846|2077077-2077155|2312141-2312291|2436059-2436252	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	1424214-1424246	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
NZ_CP014415	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	9.1|2436082|33|NZ_CP014415|CRT	NZ_CP014415.1	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	93.94	33	2	0	1	33	1513497	1513529	433395-433495|672550-672642|848361-848446|891690-891771|998087-998369|1131759-1131846|2077077-2077155|2312141-2312291|2436059-2436252	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	1513497-1513529	CATTATTGTAAGCTGACTTTTCGTCATCTTCTG	2
NZ_CP014415	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	9.1|2436082|33|NZ_CP014415|CRT	NZ_CP014415.1	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	93.94	33	2	0	1	33	2712019	2712051	433395-433495|672550-672642|848361-848446|891690-891771|998087-998369|1131759-1131846|2077077-2077155|2312141-2312291|2436059-2436252	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	2712019-2712051	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
NZ_CP014415	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	9.2|2436138|36|NZ_CP014415|CRT	NZ_CP014415.1	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	100.00	36	0	0	1	36	1216069	1216034	433395-433495|672550-672642|848361-848446|891690-891771|998087-998369|1131759-1131846|2077077-2077155|2312141-2312291|2436059-2436252	6e-11	58.6	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	1216034-1216069	TAGAGAATTTCAAAAAGAAATTCTACAGACAATGCA	0
NZ_CP014415	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	9.2|2436138|36|NZ_CP014415|CRT	NZ_CP014415.1	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	97.22	36	1	0	1	36	1920502	1920467	433395-433495|672550-672642|848361-848446|891690-891771|998087-998369|1131759-1131846|2077077-2077155|2312141-2312291|2436059-2436252	5e-10	55.5	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	1920467-1920502	TAGAGAATTTCGAAAAGAAATTCTACAGACAATGCA	1
NZ_CP014415	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	9.2|2436138|36|NZ_CP014415|CRT	NZ_CP014415.1	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	94.44	36	2	0	1	36	1741954	1741989	433395-433495|672550-672642|848361-848446|891690-891771|998087-998369|1131759-1131846|2077077-2077155|2312141-2312291|2436059-2436252	5e-09	52.3	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	1741954-1741989	TGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTA	2
NZ_CP014415	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	9.2|2436138|36|NZ_CP014415|CRT	NZ_CP014415.1	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	94.44	36	2	0	1	36	2087844	2087879	433395-433495|672550-672642|848361-848446|891690-891771|998087-998369|1131759-1131846|2077077-2077155|2312141-2312291|2436059-2436252	5e-09	52.3	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	2087844-2087879	TGCATTGTCTGTAGAATTTCCTTTCGAAATTCTCTA	2
NZ_CP014415	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	9.3|2436197|33|NZ_CP014415|CRT	NZ_CP014415.1	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	93.94	33	2	0	1	33	848427	848459	433395-433495|672550-672642|848361-848446|891690-891771|998087-998369|1131759-1131846|2077077-2077155|2312141-2312291|2436059-2436252	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	848427-848459	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
NZ_CP014415	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	9.3|2436197|33|NZ_CP014415|CRT	NZ_CP014415.1	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	93.94	33	2	0	1	33	1216122	1216090	433395-433495|672550-672642|848361-848446|891690-891771|998087-998369|1131759-1131846|2077077-2077155|2312141-2312291|2436059-2436252	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	1216090-1216122	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
NZ_CP014415	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	9.3|2436197|33|NZ_CP014415|CRT	NZ_CP014415.1	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	93.94	33	2	0	1	33	1424246	1424214	433395-433495|672550-672642|848361-848446|891690-891771|998087-998369|1131759-1131846|2077077-2077155|2312141-2312291|2436059-2436252	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	1424214-1424246	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
NZ_CP014415	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	9.3|2436197|33|NZ_CP014415|CRT	NZ_CP014415.1	Staphylococcus aureus strain USA300-SUR15 chromosome, complete genome	93.94	33	2	0	1	33	2712019	2712051	433395-433495|672550-672642|848361-848446|891690-891771|998087-998369|1131759-1131846|2077077-2077155|2312141-2312291|2436059-2436252	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	2712019-2712051	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
