bac_id	bac_def	spacer_id	hit_contig_id	hit_contig_def	identity	alignment_length	mismatch	gapopen	query_start	query_end	hit_start	hit_end	crispr_array_of_hit_genome	evalue	bitscore	coverage	spacer_sequence	hit_contig_region	hit_contig_sequence	hmm_mismatch
NZ_CP014407	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	3.1|848392|26|NZ_CP014407|CRISPRCasFinder	NZ_CP014407.1	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	96.15	26	1	0	1	26	811354	811329	433395-433495|672550-672642|848362-848447|891691-891772|954502-954784|1088174-1088261|2033492-2033570|2268556-2268706|2392474-2392667	1e-05	39.6	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	811329-811354	CGGGGCCCCAACACAGAAGCAGGCGG	1
NZ_CP014407	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	3.1|848392|26|NZ_CP014407|CRISPRCasFinder	NZ_CP014407.1	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	96.15	26	1	0	1	26	2833791	2833816	433395-433495|672550-672642|848362-848447|891691-891772|954502-954784|1088174-1088261|2033492-2033570|2268556-2268706|2392474-2392667	1e-05	39.6	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	2833791-2833816	CCGCCAGCTTCTATGTTGGGGCCCCG	1
NZ_CP014407	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	3.1|848392|26|NZ_CP014407|CRISPRCasFinder	NZ_CP014407.1	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	96.15	26	1	0	1	26	2833847	2833872	433395-433495|672550-672642|848362-848447|891691-891772|954502-954784|1088174-1088261|2033492-2033570|2268556-2268706|2392474-2392667	1e-05	39.6	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	2833847-2833872	CCGCCAGCTTCTTTGTTGGGGCCCCG	1
NZ_CP014407	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	3.1|848392|26|NZ_CP014407|CRISPRCasFinder	NZ_CP014407.1	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	92.31	26	2	0	1	26	811410	811385	433395-433495|672550-672642|848362-848447|891691-891772|954502-954784|1088174-1088261|2033492-2033570|2268556-2268706|2392474-2392667	1e-04	36.5	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	811385-811410	CGGGGCCCCAACATAGAAGCAGGCGG	2
NZ_CP014407	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	3.1|848392|26|NZ_CP014407|CRISPRCasFinder	NZ_CP014407.1	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	92.31	26	2	0	1	26	954501	954476	433395-433495|672550-672642|848362-848447|891691-891772|954502-954784|1088174-1088261|2033492-2033570|2268556-2268706|2392474-2392667	1e-04	36.5	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	954476-954501	CGGGGCCCCAACACAGAGGCTGGTGG	2
NZ_CP014407	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	4.1|891715|34|NZ_CP014407|CRISPRCasFinder	NZ_CP014407.1	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	100.00	34	0	0	1	34	1380707	1380674	433395-433495|672550-672642|848362-848447|891691-891772|954502-954784|1088174-1088261|2033492-2033570|2268556-2268706|2392474-2392667	5e-10	55.5	1.0	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	1380674-1380707	ATGGGCCCCAACAAAGAGAAATTGGATTCCCAAT	0
NZ_CP014407	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	4.1|891715|34|NZ_CP014407|CRISPRCasFinder	NZ_CP014407.1	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	100.00	34	0	0	1	34	1469866	1469899	433395-433495|672550-672642|848362-848447|891691-891772|954502-954784|1088174-1088261|2033492-2033570|2268556-2268706|2392474-2392667	5e-10	55.5	1.0	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	1469866-1469899	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	0
NZ_CP014407	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	5.1|954532|26|NZ_CP014407|CRT	NZ_CP014407.1	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	96.15	26	1	0	1	26	954476	954501	433395-433495|672550-672642|848362-848447|891691-891772|954502-954784|1088174-1088261|2033492-2033570|2268556-2268706|2392474-2392667	1e-05	39.6	1.0	CGGGGCCCCAACACAGAGGCTGGCGG	954476-954501	CGGGGCCCCAACACAGAGGCTGGTGG	1
NZ_CP014407	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	5.1|954532|26|NZ_CP014407|CRT	NZ_CP014407.1	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	92.31	26	2	0	1	26	811329	811354	433395-433495|672550-672642|848362-848447|891691-891772|954502-954784|1088174-1088261|2033492-2033570|2268556-2268706|2392474-2392667	1e-04	36.5	1.0	CGGGGCCCCAACACAGAGGCTGGCGG	811329-811354	CGGGGCCCCAACACAGAAGCAGGCGG	2
NZ_CP014407	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	5.1|954532|26|NZ_CP014407|CRT	NZ_CP014407.1	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	92.31	26	2	0	1	26	2833816	2833791	433395-433495|672550-672642|848362-848447|891691-891772|954502-954784|1088174-1088261|2033492-2033570|2268556-2268706|2392474-2392667	1e-04	36.5	1.0	CGGGGCCCCAACACAGAGGCTGGCGG	2833791-2833816	CCGCCAGCTTCTATGTTGGGGCCCCG	2
NZ_CP014407	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	5.1|954532|26|NZ_CP014407|CRT	NZ_CP014407.1	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	92.31	26	2	0	1	26	2833872	2833847	433395-433495|672550-672642|848362-848447|891691-891772|954502-954784|1088174-1088261|2033492-2033570|2268556-2268706|2392474-2392667	1e-04	36.5	1.0	CGGGGCCCCAACACAGAGGCTGGCGG	2833847-2833872	CCGCCAGCTTCTTTGTTGGGGCCCCG	2
NZ_CP014407	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	5.3|954646|26|NZ_CP014407|CRT	NZ_CP014407.1	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	96.15	26	1	0	1	26	848473	848448	433395-433495|672550-672642|848362-848447|891691-891772|954502-954784|1088174-1088261|2033492-2033570|2268556-2268706|2392474-2392667	1e-05	39.6	1.0	CGGGGCCCCAACACAGAAGCTGGCGA	848448-848473	TCGTCAGCTTCTGTGTTGGGGCCCCG	1
NZ_CP014407	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	5.3|954646|26|NZ_CP014407|CRT	NZ_CP014407.1	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	92.31	26	2	0	1	26	394728	394753	433395-433495|672550-672642|848362-848447|891691-891772|954502-954784|1088174-1088261|2033492-2033570|2268556-2268706|2392474-2392667	1e-04	36.5	1.0	CGGGGCCCCAACACAGAAGCTGGCGA	394728-394753	CGGGGCCCCAACAAAGAAGCTGACGA	2
NZ_CP014407	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	7.1|2033515|33|NZ_CP014407|CRISPRCasFinder	NZ_CP014407.1	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	96.97	33	1	0	1	33	848428	848460	433395-433495|672550-672642|848362-848447|891691-891772|954502-954784|1088174-1088261|2033492-2033570|2268556-2268706|2392474-2392667	1e-08	50.7	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	848428-848460	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	1
NZ_CP014407	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	7.1|2033515|33|NZ_CP014407|CRISPRCasFinder	NZ_CP014407.1	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	96.97	33	1	0	1	33	1172537	1172505	433395-433495|672550-672642|848362-848447|891691-891772|954502-954784|1088174-1088261|2033492-2033570|2268556-2268706|2392474-2392667	1e-08	50.7	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	1172505-1172537	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	1
NZ_CP014407	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	7.1|2033515|33|NZ_CP014407|CRISPRCasFinder	NZ_CP014407.1	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	96.97	33	1	0	1	33	1380661	1380629	433395-433495|672550-672642|848362-848447|891691-891772|954502-954784|1088174-1088261|2033492-2033570|2268556-2268706|2392474-2392667	1e-08	50.7	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	1380629-1380661	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	1
NZ_CP014407	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	7.1|2033515|33|NZ_CP014407|CRISPRCasFinder	NZ_CP014407.1	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	96.97	33	1	0	1	33	1698430	1698462	433395-433495|672550-672642|848362-848447|891691-891772|954502-954784|1088174-1088261|2033492-2033570|2268556-2268706|2392474-2392667	1e-08	50.7	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	1698430-1698462	CATTATAGTAAGCTGACTTTTCGTCAGCTTCTG	1
NZ_CP014407	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	7.1|2033515|33|NZ_CP014407|CRISPRCasFinder	NZ_CP014407.1	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	96.97	33	1	0	1	33	2668434	2668466	433395-433495|672550-672642|848362-848447|891691-891772|954502-954784|1088174-1088261|2033492-2033570|2268556-2268706|2392474-2392667	1e-08	50.7	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	2668434-2668466	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	1
NZ_CP014407	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	7.1|2033515|33|NZ_CP014407|CRISPRCasFinder	NZ_CP014407.1	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	93.94	33	2	0	1	33	1469912	1469944	433395-433495|672550-672642|848362-848447|891691-891772|954502-954784|1088174-1088261|2033492-2033570|2268556-2268706|2392474-2392667	1e-07	47.5	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	1469912-1469944	CATTATTGTAAGCTGACTTTTCGTCATCTTCTG	2
NZ_CP014407	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	9.1|2392497|33|NZ_CP014407|CRT	NZ_CP014407.1	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	93.94	33	2	0	1	33	848428	848460	433395-433495|672550-672642|848362-848447|891691-891772|954502-954784|1088174-1088261|2033492-2033570|2268556-2268706|2392474-2392667	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	848428-848460	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
NZ_CP014407	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	9.1|2392497|33|NZ_CP014407|CRT	NZ_CP014407.1	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	93.94	33	2	0	1	33	1172537	1172505	433395-433495|672550-672642|848362-848447|891691-891772|954502-954784|1088174-1088261|2033492-2033570|2268556-2268706|2392474-2392667	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	1172505-1172537	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
NZ_CP014407	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	9.1|2392497|33|NZ_CP014407|CRT	NZ_CP014407.1	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	93.94	33	2	0	1	33	1380661	1380629	433395-433495|672550-672642|848362-848447|891691-891772|954502-954784|1088174-1088261|2033492-2033570|2268556-2268706|2392474-2392667	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	1380629-1380661	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
NZ_CP014407	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	9.1|2392497|33|NZ_CP014407|CRT	NZ_CP014407.1	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	93.94	33	2	0	1	33	1469912	1469944	433395-433495|672550-672642|848362-848447|891691-891772|954502-954784|1088174-1088261|2033492-2033570|2268556-2268706|2392474-2392667	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	1469912-1469944	CATTATTGTAAGCTGACTTTTCGTCATCTTCTG	2
NZ_CP014407	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	9.1|2392497|33|NZ_CP014407|CRT	NZ_CP014407.1	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	93.94	33	2	0	1	33	2668434	2668466	433395-433495|672550-672642|848362-848447|891691-891772|954502-954784|1088174-1088261|2033492-2033570|2268556-2268706|2392474-2392667	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	2668434-2668466	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
NZ_CP014407	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	9.2|2392553|36|NZ_CP014407|CRT	NZ_CP014407.1	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	100.00	36	0	0	1	36	1172484	1172449	433395-433495|672550-672642|848362-848447|891691-891772|954502-954784|1088174-1088261|2033492-2033570|2268556-2268706|2392474-2392667	6e-11	58.6	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	1172449-1172484	TAGAGAATTTCAAAAAGAAATTCTACAGACAATGCA	0
NZ_CP014407	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	9.2|2392553|36|NZ_CP014407|CRT	NZ_CP014407.1	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	97.22	36	1	0	1	36	1876917	1876882	433395-433495|672550-672642|848362-848447|891691-891772|954502-954784|1088174-1088261|2033492-2033570|2268556-2268706|2392474-2392667	5e-10	55.5	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	1876882-1876917	TAGAGAATTTCGAAAAGAAATTCTACAGACAATGCA	1
NZ_CP014407	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	9.2|2392553|36|NZ_CP014407|CRT	NZ_CP014407.1	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	94.44	36	2	0	1	36	1698369	1698404	433395-433495|672550-672642|848362-848447|891691-891772|954502-954784|1088174-1088261|2033492-2033570|2268556-2268706|2392474-2392667	5e-09	52.3	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	1698369-1698404	TGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTA	2
NZ_CP014407	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	9.2|2392553|36|NZ_CP014407|CRT	NZ_CP014407.1	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	94.44	36	2	0	1	36	2044259	2044294	433395-433495|672550-672642|848362-848447|891691-891772|954502-954784|1088174-1088261|2033492-2033570|2268556-2268706|2392474-2392667	5e-09	52.3	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	2044259-2044294	TGCATTGTCTGTAGAATTTCCTTTCGAAATTCTCTA	2
NZ_CP014407	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	9.3|2392612|33|NZ_CP014407|CRT	NZ_CP014407.1	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	93.94	33	2	0	1	33	848428	848460	433395-433495|672550-672642|848362-848447|891691-891772|954502-954784|1088174-1088261|2033492-2033570|2268556-2268706|2392474-2392667	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	848428-848460	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
NZ_CP014407	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	9.3|2392612|33|NZ_CP014407|CRT	NZ_CP014407.1	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	93.94	33	2	0	1	33	1172537	1172505	433395-433495|672550-672642|848362-848447|891691-891772|954502-954784|1088174-1088261|2033492-2033570|2268556-2268706|2392474-2392667	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	1172505-1172537	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
NZ_CP014407	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	9.3|2392612|33|NZ_CP014407|CRT	NZ_CP014407.1	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	93.94	33	2	0	1	33	1380661	1380629	433395-433495|672550-672642|848362-848447|891691-891772|954502-954784|1088174-1088261|2033492-2033570|2268556-2268706|2392474-2392667	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	1380629-1380661	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
NZ_CP014407	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	9.3|2392612|33|NZ_CP014407|CRT	NZ_CP014407.1	Staphylococcus aureus strain USA300-SUR12 chromosome, complete genome	93.94	33	2	0	1	33	2668434	2668466	433395-433495|672550-672642|848362-848447|891691-891772|954502-954784|1088174-1088261|2033492-2033570|2268556-2268706|2392474-2392667	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	2668434-2668466	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
